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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921373
Clone id YMU001_000149_B01
Library
Length 291
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATGGTGGTGGTGGAGGTAAATTGCCGTAATCTACCTTTTTAGGTAT
CCTATTGACTGTATCTGCTTCATGGACTGTCTCTTCCTCAGTAGGAAGAGTGGATACTCC
CTTGACTCTATTTTCACGACTGATATCGTTCTTATCTTTCTGCTTCTTCTTCTAGATCTT
GCCAGAAGAACCCAATCGAAGATAGGTCATTATTTTTGCAATACGATCTAGAACGCTGCT
ATCCACACTCACAGTCACCATTTCTTGTGGAGCTGGGCAATCAGCCTTACT
■■Homology search results ■■ -
sp_hit_id Q66HG8
Definition sp|Q66HG8|RED_RAT Protein Red OS=Rattus norvegicus
Align length 35
Score (bit) 35.0
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921373|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_B01.
         (275 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66HG8|RED_RAT Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1     35   0.12 
sp|Q5NVI3|RED_PONAB Protein Red OS=Pongo abelii GN=IK PE=2 SV=1        35   0.12 
sp|Q9Z1M8|RED_MOUSE Protein Red OS=Mus musculus GN=Ik PE=2 SV=1        35   0.12 
sp|Q13123|RED_HUMAN Protein Red OS=Homo sapiens GN=IK PE=1 SV=2        35   0.12 
sp|Q02151|YMEB_LACLA Uncharacterized ABC transporter ATP-binding...    29   8.4  
sp|O70608|SYCP2_RAT Synaptonemal complex protein 2 OS=Rattus nor...    29   8.4  

>sp|Q66HG8|RED_RAT Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1
          Length = 557

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGS 171
           SKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 259 SKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293


>sp|Q5NVI3|RED_PONAB Protein Red OS=Pongo abelii GN=IK PE=2 SV=1
          Length = 557

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGS 171
           SKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 259 SKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293


>sp|Q9Z1M8|RED_MOUSE Protein Red OS=Mus musculus GN=Ik PE=2 SV=1
          Length = 557

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGS 171
           SKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 259 SKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293


>sp|Q13123|RED_HUMAN Protein Red OS=Homo sapiens GN=IK PE=1 SV=2
          Length = 557

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGS 171
           SKADCP  +   T++ +  V+ ++ +I++YLR G+
Sbjct: 259 SKADCPTMEAQTTLTTNDIVISKLTQILSYLRQGT 293


>sp|Q02151|YMEB_LACLA Uncharacterized ABC transporter ATP-binding
           protein ymeB OS=Lactococcus lactis subsp. lactis GN=ymeB
           PE=3 SV=2
          Length = 259

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 94  LFLLRKRQSMKQIQSIGYLKR*ITAIYLHHH 2
           L L  K + +KQ+Q I  LK   T IY+ HH
Sbjct: 172 LDLFAKEKLLKQLQQINQLKTAPTLIYISHH 202


>sp|O70608|SYCP2_RAT Synaptonemal complex protein 2 OS=Rattus
            norvegicus GN=Sycp2 PE=1 SV=1
          Length = 1505

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 92   LPTEEETVHEADTVNRIPKK 33
            LPT+EETVH +    ++PKK
Sbjct: 1032 LPTKEETVHSSAQTKKLPKK 1051
tr_hit_id B6TZN1
Definition tr|B6TZN1|B6TZN1_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 93
Score (bit) 74.7
E-value 2.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921373|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_B01.
         (275 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TZN1|B6TZN1_MAIZE Putative uncharacterized protein OS=Zea m...    75   2e-12
tr|A4L9Q6|A4L9Q6_MAIZE Putative splicing factor OS=Zea mays GN=s...    75   2e-12
tr|A7PDQ3|A7PDQ3_VITVI Chromosome chr11 scaffold_13, whole genom...    70   5e-11
tr|Q2RAL9|Q2RAL9_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    70   7e-11
tr|O48713|O48713_ARATH Putative uncharacterized protein At2g2646...    70   7e-11
tr|B8BJ32|B8BJ32_ORYSI Putative uncharacterized protein OS=Oryza...    70   7e-11
tr|A3C8L6|A3C8L6_ORYSJ Putative uncharacterized protein OS=Oryza...    70   7e-11
tr|Q2QXT7|Q2QXT7_ORYSJ Expressed protein (Putative uncharacteriz...    69   1e-10
tr|A9NXF6|A9NXF6_PICSI Putative uncharacterized protein OS=Picea...    69   2e-10
tr|B7FL99|B7FL99_MEDTR Putative uncharacterized protein (Fragmen...    68   3e-10
tr|A9TRU9|A9TRU9_PHYPA Predicted protein OS=Physcomitrella paten...    68   3e-10
tr|Q0IQ59|Q0IQ59_ORYSJ Os12g0143400 protein OS=Oryza sativa subs...    55   1e-06
tr|A2ZI02|A2ZI02_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A8JBA4|A8JBA4_CHLRE Predicted protein OS=Chlamydomonas reinha...    40   0.077
tr|B6M7I9|B6M7I9_BRAFL Putative uncharacterized protein OS=Branc...    37   0.65 
tr|B6LY03|B6LY03_BRAFL Putative uncharacterized protein OS=Branc...    37   0.65 
tr|Q4T470|Q4T470_TETNG Chromosome undetermined SCAF9792, whole g...    35   1.5  
tr|A7X9Y6|A7X9Y6_HIPHI IK cytokine (Fragment) OS=Hippoglossus hi...    35   1.5  
tr|Q860B9|Q860B9_DANRE IK cytokine OS=Danio rerio GN=ik PE=2 SV=1      35   1.9  
tr|Q6DDH4|Q6DDH4_XENLA MGC83922 protein OS=Xenopus laevis GN=MGC...    35   1.9  
tr|Q5ZHM2|Q5ZHM2_CHICK Putative uncharacterized protein OS=Gallu...    35   1.9  
tr|Q95H93|Q95H93_MOUSE IK cytokine OS=Mus musculus GN=Ik PE=2 SV=1     35   1.9  
tr|Q8CDT0|Q8CDT0_MOUSE Putative uncharacterized protein (Fragmen...    35   1.9  
tr|Q8C7D0|Q8C7D0_MOUSE Putative uncharacterized protein (Fragmen...    35   1.9  
tr|Q8C2T9|Q8C2T9_MOUSE Putative uncharacterized protein OS=Mus m...    35   1.9  
tr|Q6QI75|Q6QI75_RAT LRRG00133 OS=Rattus norvegicus GN=RGD130564...    35   1.9  
tr|Q3TJY5|Q3TJY5_MOUSE Putative uncharacterized protein (Fragmen...    35   1.9  
tr|Q5R6X5|Q5R6X5_PONAB Putative uncharacterized protein DKFZp459...    35   1.9  
tr|A4FUY8|A4FUY8_BOVIN IK protein OS=Bos taurus GN=IK PE=2 SV=1        35   1.9  
tr|A7SGH7|A7SGH7_NEMVE Predicted protein OS=Nematostella vectens...    35   1.9  

>tr|B6TZN1|B6TZN1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 565

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSGXXXXXXXXXKNDISRENRVKGVS 96
           SKADCP P+EMVTVSVD SVL+RIAKIMTYLRLGSSG              +E  +KG S
Sbjct: 178 SKADCPVPEEMVTVSVDGSVLERIAKIMTYLRLGSSGKVLKKK-------KKERDIKGKS 230

Query: 95  TLPTEE--ETVHEADTVNRIPKKVDYGNLPPPP 3
            L + +  E+V  + T     K     ++PPPP
Sbjct: 231 NLASGDYGESVKPSQTNGSTLK--HQSDMPPPP 261


>tr|A4L9Q6|A4L9Q6_MAIZE Putative splicing factor OS=Zea mays GN=smu2
           PE=2 SV=1
          Length = 565

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSGXXXXXXXXXKNDISRENRVKGVS 96
           SKADCP P+EMVTVSVD SVL+RIAKIMTYLRLGSSG              +E  +KG S
Sbjct: 178 SKADCPVPEEMVTVSVDGSVLERIAKIMTYLRLGSSGKVLKKK-------KKERDIKGKS 230

Query: 95  TLPTEE--ETVHEADTVNRIPKKVDYGNLPPPP 3
            L + +  E+V  + T     K     ++PPPP
Sbjct: 231 NLASGDYGESVKPSQTNGSTLK--HQSDMPPPP 261


>tr|A7PDQ3|A7PDQ3_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016370001
           PE=4 SV=1
          Length = 566

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 47/100 (47%), Positives = 56/100 (56%), Gaps = 10/100 (10%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSGXXXXXXXXXKNDISRENRVKG-V 99
           SKADCP P+EMVTV VD SVLDRIAKIM+YLRLGSSG              +E  VKG +
Sbjct: 179 SKADCPVPEEMVTVGVDGSVLDRIAKIMSYLRLGSSGKVLKKK-------KKERDVKGKI 231

Query: 98  STLPTEEETVHEADTVNRIPKKVDYG---------NLPPP 6
           ST+  E +         + P K+D G         +LPPP
Sbjct: 232 STVGNEFDE-------EKKPSKLDGGMSKNQTERESLPPP 264


>tr|Q2RAL9|Q2RAL9_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=Os11g0146700 PE=2 SV=2
          Length = 567

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 43/93 (46%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSGXXXXXXXXXKNDISRENRVKGVS 96
           SKADC  P+EMVTVSVD SVLDRIAKIM+YLRLGSSG              +E   KG +
Sbjct: 178 SKADCSVPEEMVTVSVDGSVLDRIAKIMSYLRLGSSGKVLKKK-------KKERDTKGKN 230

Query: 95  TLPT--EEETVHEADTVNRIPKKVDYGNLPPPP 3
           +L +   +E      T     K     ++PPPP
Sbjct: 231 SLASGDYDEVARPGQTNGSALKHQFEKDMPPPP 263


>tr|O48713|O48713_ARATH Putative uncharacterized protein At2g26460
           (At2g26460) OS=Arabidopsis thaliana GN=At2g26460 PE=2
           SV=1
          Length = 585

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 40/91 (43%), Positives = 52/91 (57%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSGXXXXXXXXXKNDISRENRVKGVS 96
           SKADCP P+E VTV+VD SVLDRIAKIM+YLRLGSSG         K+   + + +    
Sbjct: 179 SKADCPVPEEFVTVNVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKEKDGKGKMSTIANDY 238

Query: 95  TLPTEEETVHEADTVNRIPKKVDYGNLPPPP 3
                +  +    +VN   ++V    LPPPP
Sbjct: 239 DEDDNKSKIENGSSVNISDREV----LPPPP 265


>tr|B8BJ32|B8BJ32_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35091 PE=4 SV=1
          Length = 556

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 43/93 (46%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSGXXXXXXXXXKNDISRENRVKGVS 96
           SKADC  P+EMVTVSVD SVLDRIAKIM+YLRLGSSG              +E   KG +
Sbjct: 167 SKADCSVPEEMVTVSVDGSVLDRIAKIMSYLRLGSSGKVLKKK-------KKERDTKGKN 219

Query: 95  TLPT--EEETVHEADTVNRIPKKVDYGNLPPPP 3
           +L +   +E      T     K     ++PPPP
Sbjct: 220 SLASGDYDEVARPGQTNGSALKHQFEKDMPPPP 252


>tr|A3C8L6|A3C8L6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_031638 PE=3 SV=1
          Length = 889

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 43/93 (46%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSGXXXXXXXXXKNDISRENRVKGVS 96
           SKADC  P+EMVTVSVD SVLDRIAKIM+YLRLGSSG              +E   KG +
Sbjct: 500 SKADCSVPEEMVTVSVDGSVLDRIAKIMSYLRLGSSGKVLKKK-------KKERDTKGKN 552

Query: 95  TLPT--EEETVHEADTVNRIPKKVDYGNLPPPP 3
           +L +   +E      T     K     ++PPPP
Sbjct: 553 SLASGDYDEVARPGQTNGSALKHQFEKDMPPPP 585


>tr|Q2QXT7|Q2QXT7_ORYSJ Expressed protein (Putative uncharacterized
           protein) OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g04940 PE=4 SV=1
          Length = 536

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSGXXXXXXXXXKNDISRENRVKGVS 96
           SKADC  P+EMVTVSVD SVLDRIAKIM+YLRLGSSG              +E   KG +
Sbjct: 148 SKADCAVPEEMVTVSVDGSVLDRIAKIMSYLRLGSSGKVLKKK-------KKERDTKGNN 200

Query: 95  TLPT--EEETVHEADTVNRIPKKVDYGNLPPPP 3
           +L +   +E      T + +  +      PPPP
Sbjct: 201 SLASGDYDEVARPGQTGSSLKHQFQKDMPPPPP 233


>tr|A9NXF6|A9NXF6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 660

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 42/94 (44%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSGXXXXXXXXXKNDISRENRVKGVS 96
           SKADCP PQE VTV VD+SVL+RIAKIM+YLRLGSSG               E R K + 
Sbjct: 258 SKADCPPPQESVTVGVDASVLERIAKIMSYLRLGSSGKVLKKKRKE----KAEGRGKALQ 313

Query: 95  TLPTEEETVHEAD---TVNRIPKKVDYGNLPPPP 3
           +L +E+   +E           + ++   LPPPP
Sbjct: 314 SLASEDGNDYEKQPNAADGHSKRHLNKEMLPPPP 347


>tr|B7FL99|B7FL99_MEDTR Putative uncharacterized protein (Fragment)
           OS=Medicago truncatula PE=2 SV=1
          Length = 215

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 32/37 (86%), Positives = 35/37 (94%)
 Frame = -1

Query: 275 SKADCPAPQEMVTVSVDSSVLDRIAKIMTYLRLGSSG 165
           SKADCP P+EMVTV+VD SVLDRIAKIM+YLRLGSSG
Sbjct: 177 SKADCPVPEEMVTVNVDGSVLDRIAKIMSYLRLGSSG 213