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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921381
Clone id YMU001_000149_B10
Library
Length 604
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTTGAATTGTTACTAGCAAAAGCAAGTTACACCGAACCATACGATCTCAAATAGAACT
TAAATCCCCCCCGCCCCCAAAAAAGAGGGGATTTCATGTGTAGGCATTGGGGCTACATAA
GAAATAAATTTCAAGTGTTTTTACCAATGCCCAATGCGTTTTTACCACCAGGGCCTTTGC
AGCCGGAATCAAAAGACCTTTCGCAAGGGATTTACTCATTGCCAACTATGAACAATGCAC
CATTTGCTTGCAGCTTTCTTTGAAGAGGCTCTTTCATCAATTTTCCCAATGGTGTAGCAG
GTATCATAATGCTTCACCTTGTTTTGTAATGTGAAGATCTCTAATTTGAATGATTAACAT
CATGCTCCTTTCACACCCAATGGTCAGTGCAGAGCTACACCAATGGGGGTTGAGCCGACA
CACCCACCAAAGGTCTCGGACTCCAGACCTTGAGAGAGCAGCCCAAATCACACCAGGCTT
GCTTGGAATTGCAAGAATCCAAAATCAGCAGCACCAGCAGAGCTTTTAGAGAAGCTAAAA
CAACATTCTGACACCATTATCTTGATACTGACATCCATCTTCTTTTACACGGTCTCCTTT
ATCA
■■Homology search results ■■ -
sp_hit_id Q9H8Y8
Definition sp|Q9H8Y8|GORS2_HUMAN Golgi reassembly-stacking protein 2 OS=Homo sapiens
Align length 37
Score (bit) 33.5
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921381|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_B10.
         (604 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H8Y8|GORS2_HUMAN Golgi reassembly-stacking protein 2 OS=Hom...    33   0.85 
sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotu...    32   1.9  
sp|Q4IL82|INO80_GIBZE Putative DNA helicase INO80 OS=Gibberella ...    32   3.3  
sp|Q5SX79|SHRM1_MOUSE Protein Shroom1 OS=Mus musculus GN=Shroom1...    31   4.3  
sp|Q9JL04|FMN2_MOUSE Formin-2 OS=Mus musculus GN=Fmn2 PE=1 SV=2        31   5.5  
sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20 OS=Mus mus...    31   5.6  
sp|Q9JM99|PRG4_MOUSE Proteoglycan 4 OS=Mus musculus GN=Prg4 PE=1...    31   5.6  
sp|Q8VHI8|SEC20_RAT Vesicle transport protein SEC20 OS=Rattus no...    30   7.3  
sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2        30   9.5  
sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila ...    30   9.5  

>sp|Q9H8Y8|GORS2_HUMAN Golgi reassembly-stacking protein 2 OS=Homo
           sapiens GN=GORASP2 PE=1 SV=3
          Length = 452

 Score = 33.5 bits (75), Expect = 0.85
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 141 LPMPNAFLPPGPLQPESKDLSQG---IYSLPTMNNAP 242
           LP+P+ FLP  PL PES   +     + SLP  +NAP
Sbjct: 358 LPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSNAP 394


>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus
           purpuratus GN=HDAC1 PE=2 SV=1
          Length = 576

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +1

Query: 376 PNGQCRATPMGVEPTHPPKVSDSRP*ESSPNHTRLAWNCKNP--KSAAPAELL 528
           P  + +A PM   P  PPK S+ +P  S P   +     K P    A+PA+L+
Sbjct: 473 PAAEPQAVPMDTTPAPPPKKSEDKPEASKPTEVKAKPAEKEPGEGEASPADLV 525


>sp|Q4IL82|INO80_GIBZE Putative DNA helicase INO80 OS=Gibberella
           zeae GN=INO80 PE=3 SV=1
          Length = 1904

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 340 SNLND*HHAPFTPNGQCRATPMGVEPTHPP 429
           + L+  HH P  P  Q RA P  V P HPP
Sbjct: 157 AGLHQRHHQPGAPAHQHRAAPPPVSPLHPP 186


>sp|Q5SX79|SHRM1_MOUSE Protein Shroom1 OS=Mus musculus GN=Shroom1
           PE=1 SV=2
          Length = 823

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 412 EPTHPPKVSDSRP*ES----SPNHTRLAWNCKNPKSAAPAELLEKLKQ 543
           +P  PP V   RP +S    SP+HT L W   + K+  P+   E L Q
Sbjct: 474 KPLKPPPVDVLRPSDSETPGSPHHTSLTWGQFDSKTTWPSRHFEALVQ 521


>sp|Q9JL04|FMN2_MOUSE Formin-2 OS=Mus musculus GN=Fmn2 PE=1 SV=2
          Length = 1578

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +3

Query: 144  PMPNAFLPPGPLQPESKDLSQGIYSLPTMNNAPFACSFL*RGSFINFPNGVAGIIM 311
            P P A +PP PL P S           T+  AP  C FL    F   P G+ G+ M
Sbjct: 1081 PPPGAGIPPPPLLPGSGPPHSSQVGSSTLPAAPQGCGFL----FPPLPTGLFGLGM 1132


>sp|Q6QD59|SEC20_MOUSE Vesicle transport protein SEC20 OS=Mus
           musculus GN=Bnip1 PE=2 SV=1
          Length = 228

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 389 AELHQWGLSRHTHQRSRTPDLERAAQITPGLLGIARIQNQQHQQS 523
           AEL Q G S    + ++    + ++ IT  L+GI+R+ +QQ QQS
Sbjct: 112 AELLQGGDSLRQRKTTKESLAQTSSSITESLMGISRMMSQQVQQS 156


>sp|Q9JM99|PRG4_MOUSE Proteoglycan 4 OS=Mus musculus GN=Prg4 PE=1
           SV=2
          Length = 1054

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 21/55 (38%), Positives = 24/55 (43%)
 Frame = +1

Query: 367 PFTPNGQCRATPMGVEPTHPPKVSDSRP*ESSPNHTRLAWNCKNPKSAAPAELLE 531
           P TP      TP   EPT P K     P  +SP  T L      PK  APAE ++
Sbjct: 591 PTTPKEPEPTTPKEPEPTTPKK---PEPTTTSPKTTTLKATTLAPKVTAPAEEIQ 642


>sp|Q8VHI8|SEC20_RAT Vesicle transport protein SEC20 OS=Rattus
           norvegicus GN=Bnip1 PE=2 SV=1
          Length = 228

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 389 AELHQWGLSRHTHQRSRTPDLERAAQITPGLLGIARIQNQQHQQS 523
           AEL Q G S    + ++    + ++ IT  L+GI+R+ +QQ QQS
Sbjct: 112 AELLQGGDSLRQRKTTKESLAQTSSTITESLMGISRMMSQQVQQS 156


>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2
          Length = 3433

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 38  TIRSQIELKSPPPPKKRGFHV 100
           T +S+ EL  PPPPKKR  HV
Sbjct: 664 TKKSKQELPPPPPPKKRQIHV 684


>sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila
           melanogaster GN=salm PE=1 SV=3
          Length = 1365

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 361 HAPFTPNGQCRATPMG--VEPTHPPKVSDSRP*ESSPNHTRLAWNCKNPKSAAPA 519
           HA   P+    ATP+   ++  HPP +    P +SSPNH+        P  +APA
Sbjct: 501 HAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPTDSSPNHS----PAPPPLGSAPA 551
tr_hit_id B4QQZ3
Definition tr|B4QQZ3|B4QQZ3_DROSI GD13256 OS=Drosophila simulans
Align length 30
Score (bit) 26.9
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921381|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_B10.
         (604 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4QQZ3|B4QQZ3_DROSI GD13256 OS=Drosophila simulans GN=GD13256...    27   4.3  
tr|B8Y8R9|B8Y8R9_LATME HoxD3 OS=Latimeria menadoensis PE=4 SV=1        34   7.6  
tr|Q53TE3|Q53TE3_HUMAN Putative uncharacterized protein GORASP2 ...    33   9.8  
tr|B4DQF1|B4DQF1_HUMAN cDNA FLJ55810, highly similar to Golgi re...    33   9.8  
tr|B4DNR1|B4DNR1_HUMAN cDNA FLJ55232, highly similar to Golgi re...    33   9.8  
tr|B4DKT0|B4DKT0_HUMAN cDNA FLJ59712, highly similar to Golgi re...    33   9.8  
tr|B4DEI4|B4DEI4_HUMAN cDNA FLJ54595, highly similar to Golgi re...    33   9.8  

>tr|B4QQZ3|B4QQZ3_DROSI GD13256 OS=Drosophila simulans GN=GD13256
           PE=4 SV=1
          Length = 357

 Score = 26.9 bits (58), Expect(3) = 4.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 144 PMPNAFLPPGPLQPESKDLSQGIYSLPTMN 233
           P P  +LPP P   +   LSQ  YS+PT N
Sbjct: 307 PPPPKYLPP-PQVKQGIRLSQASYSIPTTN 335



 Score = 23.1 bits (48), Expect(3) = 4.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 68  PPPPKKRGF 94
           PPPPKK+G+
Sbjct: 268 PPPPKKQGY 276



 Score = 21.2 bits (43), Expect(3) = 4.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 58  T*IPPAPKKEG 90
           T IPP PKK+G
Sbjct: 265 TYIPPPPKKQG 275


>tr|B8Y8R9|B8Y8R9_LATME HoxD3 OS=Latimeria menadoensis PE=4 SV=1
          Length = 396

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +1

Query: 325 CNVKISNLND*HHAPFTPNGQCRATPMGVEPTHPPKVSDSRP----*ESSPNHTRLAWNC 492
           C+++ S +   HH     NG C  T        PP +S+ +P      SSPN   +A   
Sbjct: 47  CSIQTSTIRPPHHKSSDINGTCMRTSGSQGTCQPPSISEQQPAPSLPPSSPNANSIATQK 106

Query: 493 KN 498
           KN
Sbjct: 107 KN 108


>tr|Q53TE3|Q53TE3_HUMAN Putative uncharacterized protein GORASP2
           (Golgi reassembly stacking protein 2, 55kDa, isoform
           CRA_c) OS=Homo sapiens GN=GORASP2 PE=2 SV=1
          Length = 452

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 141 LPMPNAFLPPGPLQPESKDLSQG---IYSLPTMNNAP 242
           LP+P+ FLP  PL PES   +     + SLP  +NAP
Sbjct: 358 LPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSNAP 394


>tr|B4DQF1|B4DQF1_HUMAN cDNA FLJ55810, highly similar to Golgi
           reassembly-stacking protein 2 OS=Homo sapiens PE=2 SV=1
          Length = 310

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 141 LPMPNAFLPPGPLQPESKDLSQG---IYSLPTMNNAP 242
           LP+P+ FLP  PL PES   +     + SLP  +NAP
Sbjct: 216 LPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSNAP 252


>tr|B4DNR1|B4DNR1_HUMAN cDNA FLJ55232, highly similar to Golgi
           reassembly-stacking protein 2 OS=Homo sapiens PE=2 SV=1
          Length = 408

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 141 LPMPNAFLPPGPLQPESKDLSQG---IYSLPTMNNAP 242
           LP+P+ FLP  PL PES   +     + SLP  +NAP
Sbjct: 314 LPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSNAP 350


>tr|B4DKT0|B4DKT0_HUMAN cDNA FLJ59712, highly similar to Golgi
           reassembly-stacking protein 2 OS=Homo sapiens PE=2 SV=1
          Length = 464

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 141 LPMPNAFLPPGPLQPESKDLSQG---IYSLPTMNNAP 242
           LP+P+ FLP  PL PES   +     + SLP  +NAP
Sbjct: 370 LPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSNAP 406


>tr|B4DEI4|B4DEI4_HUMAN cDNA FLJ54595, highly similar to Golgi
           reassembly-stacking protein 2 OS=Homo sapiens PE=2 SV=1
          Length = 405

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 141 LPMPNAFLPPGPLQPESKDLSQG---IYSLPTMNNAP 242
           LP+P+ FLP  PL PES   +     + SLP  +NAP
Sbjct: 311 LPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSNAP 347