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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921384
Clone id YMU001_000149_C01
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAAGATGAGGAAAGCGGGCCTATAGATGAGCAAAAGGATATGGATGAGGAAAGCAGGCC
TAGGGATGAGCAAAATGATATGGATCAGGCAAGGATGTATGAGGCAAGCCGATCAACCTT
GAATCAGGCAGAAAGGCCATGGGGGAGACCCTGATGAAGATGTGAATGATGACTATGAAG
ATAAAGCGGAGGAGAGCAACAACGACATGAACACTACAGAGACCCAGTATGGACCCTTGC
TACCTGTAGATACGGTTGTTCCGGTAATGTCTATTCAAGTATGGCAAAATATGTTCAGCT
TCTAACTACTTATATGTACTTGTCAACTTTTACAGAGGTTGATTATCTTGGACGTCAATG
GATTGCTGCTGATGCGGGTGCCTCTCGGTGACAGAGGACCCTTTGAGGATTTGCAAACGT
TTCGGATGAGAA
■■Homology search results ■■ -
sp_hit_id Q803E1
Definition sp|Q803E1|CQ085_DANRE Uncharacterized protein C17orf85 homolog OS=Danio rerio
Align length 44
Score (bit) 33.1
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921384|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_C01.
         (432 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q803E1|CQ085_DANRE Uncharacterized protein C17orf85 homolog O...    33   0.49 
sp|Q5ALX3|SPT5_CANAL Transcription elongation factor SPT5 OS=Can...    30   3.2  
sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo ...    30   4.2  
sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo s...    30   4.2  
sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos ta...    30   4.2  
sp|Q802A6|STK4_SQUAC Serine/threonine-protein kinase 3/4 OS=Squa...    29   7.1  
sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytic...    29   7.1  
sp|Q7S6P8|BFR2_NEUCR Protein bfr-2 OS=Neurospora crassa GN=bfr-2...    29   7.1  
sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17 OS=S...    29   9.3  
sp|Q05021|TAF7_YEAST Transcription initiation factor TFIID subun...    29   9.3  
sp|Q3SZ31|HS020_BOVIN Protein HSPC020 homolog OS=Bos taurus PE=2...    29   9.3  
sp|Q4AA88|ENO_MYCHJ Enolase OS=Mycoplasma hyopneumoniae (strain ...    29   9.3  
sp|Q4A8B5|ENO_MYCH7 Enolase OS=Mycoplasma hyopneumoniae (strain ...    29   9.3  
sp|Q601S2|ENO_MYCH2 Enolase OS=Mycoplasma hyopneumoniae (strain ...    29   9.3  
sp|Q9C9M7|CDKD2_ARATH Cyclin-dependent kinase D-2 OS=Arabidopsis...    29   9.3  

>sp|Q803E1|CQ085_DANRE Uncharacterized protein C17orf85 homolog
           OS=Danio rerio GN=zgc:55870 PE=2 SV=1
          Length = 694

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 5   DEESGPIDEQKDMDEESRPRDEQNDMDQARMYEASRSTLNQAER 136
           +EE G +D+  D DEE     +  D  + +  E   ++L+QAER
Sbjct: 219 EEEEGEVDDDDDDDEEDEKARDIEDETEKKPQETRETSLSQAER 262


>sp|Q5ALX3|SPT5_CANAL Transcription elongation factor SPT5
           OS=Candida albicans GN=SPT5 PE=3 SV=1
          Length = 956

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 2   QDEESGPIDEQKDMDEESRPRDEQND 79
           QD+E+G  +E++D DEE    DE+ D
Sbjct: 65  QDQEAGQDEEEQDEDEEEEEDDEEED 90


>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo
           abelii GN=POLE3 PE=2 SV=1
          Length = 147

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 26  DEQKDMDEESRPRDEQNDMDQARMYEASRS 115
           D++ D +E+ + RDE ND D+ R+ E  ++
Sbjct: 111 DKKTDSEEQDKSRDEDNDEDEERLEEEEQN 140


>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo
           sapiens GN=POLE3 PE=1 SV=1
          Length = 147

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 26  DEQKDMDEESRPRDEQNDMDQARMYEASRS 115
           D++ D +E+ + RDE ND D+ R+ E  ++
Sbjct: 111 DKKTDSEEQDKSRDEDNDEDEERLEEEEQN 140


>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos
           taurus GN=POLE3 PE=2 SV=1
          Length = 147

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 26  DEQKDMDEESRPRDEQNDMDQARMYEASRS 115
           D++ D +E+ + RDE ND D+ R+ E  ++
Sbjct: 111 DKKTDSEEQDKSRDEDNDEDEERLEEEEQN 140


>sp|Q802A6|STK4_SQUAC Serine/threonine-protein kinase 3/4 OS=Squalus
           acanthias GN=STK4 PE=2 SV=1
          Length = 491

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 26  DEQKDMDEESRPRDEQNDMDQARMYEAS 109
           ++Q+D+D++     E++DMD   M  AS
Sbjct: 309 EQQRDLDQDDEENSEEDDMDSGTMVRAS 336


>sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica
           GN=NOP12 PE=3 SV=1
          Length = 509

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 2   QDEESGPIDEQKDMDEESRPRDEQNDMDQARMYE 103
           +DEE    DE+ + DEE +  D+ +D D+  + E
Sbjct: 52  EDEEDEEEDEEDEEDEEEKEEDDDDDDDEEEIEE 85


>sp|Q7S6P8|BFR2_NEUCR Protein bfr-2 OS=Neurospora crassa GN=bfr-2
           PE=3 SV=1
          Length = 636

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 2   QDEESGPIDEQKDMDEESRPRDEQNDMD 85
           +DE+    DE +D D+ES   DE+ND++
Sbjct: 275 EDEDEDDEDEDEDEDDESGDDDEKNDVN 302


>sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17
           OS=Schizosaccharomyces pombe GN=SPAC23A1.17 PE=1 SV=1
          Length = 1611

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 2   QDEESGPIDEQKDMDEESRPRDEQNDMDQARMYEASRSTLNQ 127
           QDE S   DE KD++EE     E+  +D     EA R  L +
Sbjct: 392 QDEPSEKDDENKDVEEEQEQEQEEEQIDPE---EAKRIALRE 430


>sp|Q05021|TAF7_YEAST Transcription initiation factor TFIID subunit
           7 OS=Saccharomyces cerevisiae GN=TAF7 PE=1 SV=1
          Length = 590

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 2   QDEESGPIDEQKDMDEESRPRDEQNDMDQARMYEASRSTLNQAER 136
           ++EE    +E++D  +E    DE+ND D+  ++E      N+  R
Sbjct: 518 EEEEEEEEEEEEDEVDEDEEDDEENDEDEDNVHEREHIQENKVVR 562
tr_hit_id Q08BV5
Definition tr|Q08BV5|Q08BV5_DANRE Zgc:154097 OS=Danio rerio
Align length 49
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921384|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_C01.
         (432 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q08BV5|Q08BV5_DANRE Zgc:154097 OS=Danio rerio GN=zgc:154097 P...    33   9.3  
tr|B8MBT7|B8MBT7_9EURO DUF500 domain protein OS=Talaromyces stip...    33   9.3  

>tr|Q08BV5|Q08BV5_DANRE Zgc:154097 OS=Danio rerio GN=zgc:154097 PE=1
           SV=1
          Length = 570

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 5   DEESGPIDEQKDMDEESRPRDEQNDMDQARMYEASRSTLNQAERPWGRP 151
           D+E  P D++ D D++    D+  D+++    E  ++ LNQ   P   P
Sbjct: 359 DDEGEPEDDEDDDDDDDDDDDDDEDVEEEEEEEEEKTELNQFSTPPSAP 407


>tr|B8MBT7|B8MBT7_9EURO DUF500 domain protein OS=Talaromyces
           stipitatus ATCC 10500 GN=TSTA_119770 PE=4 SV=1
          Length = 607

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 2   QDEESGPIDEQKDMDEESRPRDEQNDMDQARMYEASRSTLNQAERP 139
           +D    PI+   D  + S   D Q+D +   +++AS +T+ ++ERP
Sbjct: 404 RDTAESPIENPWDTPDTSEDHDVQSDSNDFEIHDASNATVAKSERP 449