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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921389
Clone id YMU001_000149_C08
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGCAATGGGAATAGGCTCTATCCCATCTGTAGTACTCTCTACAATGGCCTCCTGAATCT
CTTGCAAGGCAAGCAAGCGGTCCTCATCTTTTTCCTTATTGAGCATTTCCAATGTGACCT
CCATTCTCTCAGTGGCCGTGCTCTTTGATTATGGATATGAGTCTCAAGTTCGTGTGTATG
TACACAAGCTTCTCTATATGAGATGGGAGTAGCCCTTTCTTCTCTTGGTATGAATGAGAC
CATGTGCAAAAAGTAAGGGCTCCTTACTTTCCATATAGGAACATCTTCAGCATAAAAAAA
CCTACGCAAGGCTTGGTTTGCTTGCTTCCGTGTTTGCAAGCCAAATGCACTTGCCAGACC
CCGTTGAGCAACGTTCCTCTTCTTGCTTGAGGACCCCACATTGGACTTGGAAGAGCCACT
TACATTAGTAGTTCCCTTAGCATGCGTACTCATTGAAGCACCTCCTTGAGCTTGAGAGGC
GTCTCCTTCCAAATCATTG
■■Homology search results ■■ -
sp_hit_id A3MZC2
Definition sp|A3MZC2|HEM1_ACTP2 Glutamyl-tRNA reductase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20)
Align length 97
Score (bit) 35.0
E-value 0.19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921389|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_C08.
         (499 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A3MZC2|HEM1_ACTP2 Glutamyl-tRNA reductase OS=Actinobacillus p...    35   0.19 
sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CE...    31   3.7  

>sp|A3MZC2|HEM1_ACTP2 Glutamyl-tRNA reductase OS=Actinobacillus
           pleuropneumoniae serotype 5b (strain L20) GN=hemA PE=3
           SV=1
          Length = 436

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
 Frame = -2

Query: 348 AFGLQTRKQANQALRRFFYAEDVPIWKV--RSPYFLHMVSFIPREERATPISYREACVHT 175
           AF  Q R+ A + ++    AE V I     R+  + H     PREE    I++RE C   
Sbjct: 22  AFDDQKRQLAFEQIQHRALAESVVILSTCNRTELYFHNAEITPREEHEDNIAWREQC--- 78

Query: 174 HELETHIHNQRARPLRE---WRSHWKCSIRKKMRTAC 73
            E    IH      LRE   ++ + + S R  MR AC
Sbjct: 79  FEWFAEIHQLEHNELRECIYFKQNME-SARHLMRVAC 114


>sp|P49454|CENPF_HUMAN Centromere protein F OS=Homo sapiens GN=CENPF
           PE=1 SV=2
          Length = 3210

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 225 REERATPISYREACVHTHELETHIHNQRARPLREWRSHWKCSIR 94
           +E   + I++ E C+ T ++++H +N+R R L   R +    IR
Sbjct: 637 KENLQSKINHLETCLKTQQIKSHEYNERVRTLEMDRENLSVEIR 680
tr_hit_id B3H0R8
Definition tr|B3H0R8|B3H0R8_ACTP7 Glutamyl-tRNA reductase (GluTR) OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
Align length 97
Score (bit) 34.3
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921389|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_C08.
         (499 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3H0R8|B3H0R8_ACTP7 Glutamyl-tRNA reductase (GluTR) OS=Actino...    34   3.3  
tr|B0BTQ9|B0BTQ9_ACTPJ Glutamyl-tRNA reductase OS=Actinobacillus...    34   3.3  
tr|A7NVZ0|A7NVZ0_VITVI Chromosome chr5 scaffold_2, whole genome ...    33   7.4  
tr|A5BYZ7|A5BYZ7_VITVI Putative uncharacterized protein OS=Vitis...    33   7.4  
tr|Q4QB83|Q4QB83_LEIMA Putative uncharacterized protein OS=Leish...    33   7.4  
tr|B0WZH4|B0WZH4_CULQU Zinc finger protein OS=Culex quinquefasci...    33   7.4  
tr|A5C1M2|A5C1M2_VITVI Putative uncharacterized protein OS=Vitis...    33   9.7  

>tr|B3H0R8|B3H0R8_ACTP7 Glutamyl-tRNA reductase (GluTR)
           OS=Actinobacillus pleuropneumoniae serotype 7 (strain
           AP76) GN=hemA PE=4 SV=1
          Length = 436

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
 Frame = -2

Query: 348 AFGLQTRKQANQALRRFFYAEDVPIWKV--RSPYFLHMVSFIPREERATPISYREACVHT 175
           AF  Q R+ A + ++    AE V I     R+  + H     PREE    I++RE C   
Sbjct: 22  AFDDQKRQLAFEQIQHRALAESVVILSTCNRTELYFHNAEITPREEHEDNIAWREQC--- 78

Query: 174 HELETHIHNQRARPLRE---WRSHWKCSIRKKMRTAC 73
            E    IH      LRE   ++ + + + R  MR AC
Sbjct: 79  FEWFAEIHQLEHNELRECIYFKQNMEAA-RHLMRVAC 114


>tr|B0BTQ9|B0BTQ9_ACTPJ Glutamyl-tRNA reductase OS=Actinobacillus
           pleuropneumoniae serotype 3 (strain JL03) GN=hemA PE=4
           SV=1
          Length = 436

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
 Frame = -2

Query: 348 AFGLQTRKQANQALRRFFYAEDVPIWKV--RSPYFLHMVSFIPREERATPISYREACVHT 175
           AF  Q R+ A + ++    AE V I     R+  + H     PREE    I++RE C   
Sbjct: 22  AFDDQKRQLAFEQIQHRALAESVVILSTCNRTELYFHNAEITPREEHEDNIAWREQC--- 78

Query: 174 HELETHIHNQRARPLRE---WRSHWKCSIRKKMRTAC 73
            E    IH      LRE   ++ + + + R  MR AC
Sbjct: 79  FEWFAEIHQLEHNELRECIYFKQNMEAA-RHLMRVAC 114


>tr|A7NVZ0|A7NVZ0_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019718001
           PE=4 SV=1
          Length = 811

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 336 QTRKQANQALRRFFYAEDVPIWKVRSPYFLHMVSFI 229
           +TRK+   A+ +FFY   VP+    SPYF  M+  +
Sbjct: 296 KTRKEVISAICKFFYHAGVPLHAANSPYFHKMLELV 331


>tr|A5BYZ7|A5BYZ7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_033845 PE=4 SV=1
          Length = 706

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 336 QTRKQANQALRRFFYAEDVPIWKVRSPYFLHMVSFI 229
           +TRK+   A+ +FFY   VP+    SPYF  M+  +
Sbjct: 304 KTRKEVISAICKFFYHAGVPLHAANSPYFHKMLELV 339


>tr|Q4QB83|Q4QB83_LEIMA Putative uncharacterized protein
           OS=Leishmania major GN=LmjF23.0800 PE=4 SV=1
          Length = 222

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = -2

Query: 300 FFYAEDVPIWKVRSPYFLHMVSFIPREERATPISYREACVHTHELETHIHNQRARPLREW 121
           ++Y    P W+    + L+++  +    R+   +YR   V TH++  H+   R+  L  W
Sbjct: 116 YYYETGRPFWQADLQHLLNLLRVMDTSPRSKLYAYRS--VDTHDVPAHVLRHRSENL--W 171

Query: 120 RSHWKCSIRKKMRTACLPCKRFRRP 46
           +  +      + R   L C  F RP
Sbjct: 172 KREY------EERVFRLTCSAFERP 190


>tr|B0WZH4|B0WZH4_CULQU Zinc finger protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ012604 PE=4 SV=1
          Length = 635

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -2

Query: 231 IPREERATPISYREACVHTHE--LETHIHNQRARPLREWRSHWKCSIRKKMRTACLPCKR 58
           +P EE    +  R  C   H   L  + +    R L + R HW  +  ++ +  C  CKR
Sbjct: 170 VPEEELDVKLLKRYRCKECHRPFLNLNAYRNHLRKLEQIRQHWLLTCSQEQKRTCAYCKR 229


>tr|A5C1M2|A5C1M2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026476 PE=4 SV=1
          Length = 431

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = -2

Query: 324 QANQALRRFFYAEDVPIWKVRSPYFLHMVSFI 229
           +A+ A+RRFFY  D+PI  V S YF  M+  I
Sbjct: 55  RADMAVRRFFYDADIPINVVNSFYFKPMLDVI 86