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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921391
Clone id YMU001_000149_C10
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTGAGGCAAATAATCAGACTATCATTAAGAGCCACAATAGTACAAACAATCCAGAGTGT
CTCAAAGAAACAAACAAAATCCAGCTTCAAAACCTTTGTTACCTTCTATCGAATTTGCAC
CTCCTCAAAAGATGCGAGTAAAAGCCCCATAAAAAGGGGAGTTTCCATATACCTACTCTC
TGAAAGGAGAAAGAGAATCCCTACGCACCCCCCTTCCTGACAGAGGGGAAGGATCTGACC
ATCCCACTAAAGATCCAAAGGTAATTCATTGTCTAGCATAAAAAAGGTGATCTCCTATGT
CTGGACCATATCAGAACAGGACCTTGAGGCTCCAGCCCAGCACCGAAGTGCGCAAGTTAA
ATCAAGGCAGGACAATTATTCCTGTGATACAAAAGAAGCCATTGACAATGCACTTGATAC
ATATTGACTTTCCTTCATTCCCGAAGAAAACCAAACTGACTACCAACATCAATTAACTAT
CACTTGAGTCCGGACAACAAAACGTTTAGCAACGCTTCTT
■■Homology search results ■■ -
sp_hit_id O88902
Definition sp|O88902|PTN23_RAT Tyrosine-protein phosphatase non-receptor type 23 (Fragment) OS=Rattus norvegicus
Align length 92
Score (bit) 31.2
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921391|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_C10.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O88902|PTN23_RAT Tyrosine-protein phosphatase non-receptor ty...    31   3.0  
sp|Q86117|POLG_RHDVS Genome polyprotein OS=Rabbit hemorrhagic di...    31   4.0  
sp|P27410|POLG_RHDVF Genome polyprotein OS=Rabbit hemorrhagic di...    31   4.0  
sp|Q89273|POLG_RHDVB Genome polyprotein OS=Rabbit hemorrhagic di...    31   4.0  
sp|Q86119|POLG_RHDVA Genome polyprotein OS=Rabbit hemorrhagic di...    31   4.0  
sp|P27411|POLG_RHDV3 Genome polyprotein OS=Rabbit hemorrhagic di...    31   4.0  
sp|Q85433|CAPSD_RHDVR Subgenomic capsid protein VP60 OS=Rabbit c...    31   4.0  
sp|Q5F3P8|SET1B_CHICK Histone-lysine N-methyltransferase SETD1B ...    30   5.2  
sp|A4IQ49|RECU_GEOTN Holliday junction resolvase recU OS=Geobaci...    30   5.2  
sp|Q0B0S7|RL25_SYNWW 50S ribosomal protein L25 OS=Syntrophomonas...    30   6.8  
sp|Q09YH7|MET_SAIBB Hepatocyte growth factor receptor OS=Saimiri...    30   6.9  
sp|Q2QLC0|MET_CALMO Hepatocyte growth factor receptor OS=Callice...    30   6.9  
sp|Q09YL1|MET_ATEGE Hepatocyte growth factor receptor OS=Ateles ...    30   6.9  
sp|Q07DV8|MET_AOTNA Hepatocyte growth factor receptor OS=Aotus n...    30   6.9  
sp|P07819|SCRB_BACSU Sucrose-6-phosphate hydrolase OS=Bacillus s...    30   8.8  
sp|P44493|AMIB_HAEIN Probable N-acetylmuramoyl-L-alanine amidase...    30   9.0  

>sp|O88902|PTN23_RAT Tyrosine-protein phosphatase non-receptor type
           23 (Fragment) OS=Rattus norvegicus GN=Ptpn23 PE=1 SV=2
          Length = 1499

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 26/92 (28%), Positives = 33/92 (35%)
 Frame = +3

Query: 72  KQNPASKPLLPSIEFAPPQKMRVKAP*KGEFPYTYSLKGERESLRTPLPDRGEGSDHPTK 251
           +  PA  P  P      P    V  P     PYTYS+ G ++ L  PLP        PT 
Sbjct: 722 RPGPAPAPPQPCFPVPQPVPQSVPQPQPLPTPYTYSI-GTKQHLTGPLPQHHFPPGIPTS 780

Query: 252 DPKVIHCLA*KR*SPMSGPYQNRTLRLQPSTE 347
            P           +P  GP     L+ QP  +
Sbjct: 781 FP-----------APRIGPQPPPQLQPQPQPQ 801


>sp|Q86117|POLG_RHDVS Genome polyprotein OS=Rabbit hemorrhagic disease
            virus (strain SD) GN=ORF1 PE=3 SV=1
          Length = 2344

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = +3

Query: 102  PSIEFAPPQKMRVKAP*KGEFPYTYSLKGERESLRTPLPDRGEGSDHPTKDPKVIHCLA* 281
            P IE  P  ++R       +FP+        E +   +PD      HPT DP ++  L  
Sbjct: 1905 PGIEIGPGLEVR-------QFPHVVIDARSLEPVTITMPDLRPNMYHPTGDPGLVPTLVL 1957

Query: 282  KR*SPMSGPYQNRTLRLQPSTEVR 353
               + +  P+   T  +Q + E R
Sbjct: 1958 SVYNNLINPFGGSTSAIQVTVETR 1981


>sp|P27410|POLG_RHDVF Genome polyprotein OS=Rabbit hemorrhagic disease
            virus (strain Rabbit/Germany/FRG/1989) GN=ORF1 PE=1 SV=1
          Length = 2344

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = +3

Query: 102  PSIEFAPPQKMRVKAP*KGEFPYTYSLKGERESLRTPLPDRGEGSDHPTKDPKVIHCLA* 281
            P IE  P  ++R       +FP+        E +   +PD      HPT DP ++  L  
Sbjct: 1905 PGIEIGPGLEVR-------QFPHVVIDARSLEPVTITMPDLRPNMYHPTGDPGLVPTLVL 1957

Query: 282  KR*SPMSGPYQNRTLRLQPSTEVR 353
               + +  P+   T  +Q + E R
Sbjct: 1958 SVYNNLINPFGGSTSAIQVTVETR 1981


>sp|Q89273|POLG_RHDVB Genome polyprotein OS=Rabbit hemorrhagic disease
            virus (strain BS89) GN=ORF1 PE=1 SV=1
          Length = 2344

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = +3

Query: 102  PSIEFAPPQKMRVKAP*KGEFPYTYSLKGERESLRTPLPDRGEGSDHPTKDPKVIHCLA* 281
            P IE  P  ++R       +FP+        E +   +PD      HPT DP ++  L  
Sbjct: 1905 PGIEIGPGLEVR-------QFPHVVIDARSLEPVTITMPDLRPNMYHPTGDPGLVPTLVL 1957

Query: 282  KR*SPMSGPYQNRTLRLQPSTEVR 353
               + +  P+   T  +Q + E R
Sbjct: 1958 SVYNNLINPFGGSTSAIQVTVETR 1981


>sp|Q86119|POLG_RHDVA Genome polyprotein OS=Rabbit hemorrhagic disease
            virus (strain AST89) GN=ORF1 PE=1 SV=2
          Length = 2344

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = +3

Query: 102  PSIEFAPPQKMRVKAP*KGEFPYTYSLKGERESLRTPLPDRGEGSDHPTKDPKVIHCLA* 281
            P IE  P  ++R       +FP+        E +   +PD      HPT DP ++  L  
Sbjct: 1905 PGIEIGPGLEVR-------QFPHVVIDARSLEPVTITMPDLRPNMYHPTGDPGLVPTLVL 1957

Query: 282  KR*SPMSGPYQNRTLRLQPSTEVR 353
               + +  P+   T  +Q + E R
Sbjct: 1958 SVYNNLINPFGGSTSAIQVTVETR 1981


>sp|P27411|POLG_RHDV3 Genome polyprotein OS=Rabbit hemorrhagic disease
            virus (strain V-351) GN=ORF1 PE=3 SV=2
          Length = 2344

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = +3

Query: 102  PSIEFAPPQKMRVKAP*KGEFPYTYSLKGERESLRTPLPDRGEGSDHPTKDPKVIHCLA* 281
            P IE  P  ++R       +FP+        E +   +PD      HPT DP ++  L  
Sbjct: 1905 PGIEIGPGLEVR-------QFPHVVIDARSLEPVTITMPDLRPNMYHPTGDPGLVPTLVL 1957

Query: 282  KR*SPMSGPYQNRTLRLQPSTEVR 353
               + +  P+   T  +Q + E R
Sbjct: 1958 SVYNNLINPFGGSTSAIQVTVETR 1981


>sp|Q85433|CAPSD_RHDVR Subgenomic capsid protein VP60 OS=Rabbit
           calicivirus PE=2 SV=1
          Length = 576

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/84 (25%), Positives = 34/84 (40%)
 Frame = +3

Query: 102 PSIEFAPPQKMRVKAP*KGEFPYTYSLKGERESLRTPLPDRGEGSDHPTKDPKVIHCLA* 281
           P IE  P  ++R       +FP+        E +   +PD      HPT DP ++  L  
Sbjct: 140 PGIEIGPGLEVR-------QFPHVVIDARSLEPVTITMPDLRPNMYHPTGDPGLVPTLVL 192

Query: 282 KR*SPMSGPYQNRTLRLQPSTEVR 353
              + +  P+   T  +Q + E R
Sbjct: 193 SVYNNLINPFGGSTSAIQVTVETR 216


>sp|Q5F3P8|SET1B_CHICK Histone-lysine N-methyltransferase SETD1B
            OS=Gallus gallus GN=SETD1B PE=2 SV=1
          Length = 2008

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 18   DYH*EPQ*YKQSRVSQRNKQNPASKPLLPSIEFAPPQ 128
            D+  E    K  R  +R K++P   P++PS E++PPQ
Sbjct: 1672 DFKEEEAHAKPKRQWRRQKKSPEHLPVIPSPEYSPPQ 1708


>sp|A4IQ49|RECU_GEOTN Holliday junction resolvase recU
           OS=Geobacillus thermodenitrificans (strain NG80-2)
           GN=recU PE=3 SV=1
          Length = 201

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 294 PMSGPYQNRTLRLQPSTEVRKLNQGRTIIPVIQKKPLTMHLIHIDFP 434
           PM+  Y NR + L+              I V+ KKP  + ++ +D+P
Sbjct: 22  PMAADYANRGMTLEEDLNATNEYYRERGIAVVYKKPTPVQIVRVDYP 68


>sp|Q0B0S7|RL25_SYNWW 50S ribosomal protein L25 OS=Syntrophomonas
           wolfei subsp. wolfei (strain Goettingen) GN=rplY PE=3
           SV=1
          Length = 209

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 372 TIIPVIQKKPLTMHLIHIDFPSFPKKTKLTTNI 470
           T+I  IQ+ P++  LIH+DF S     K+ +N+
Sbjct: 75  TLIREIQRNPVSGQLIHLDFLSVNLNEKINSNV 107
tr_hit_id B7FQC5
Definition tr|B7FQC5|B7FQC5_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 61
Score (bit) 33.5
E-value 6.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921391|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_C10.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FQC5|B7FQC5_PHATR Predicted protein OS=Phaeodactylum tricor...    33   6.5  
tr|Q2GW39|Q2GW39_CHAGB Putative uncharacterized protein OS=Chaet...    33   8.5  

>tr|B7FQC5|B7FQC5_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_43016 PE=4 SV=1
          Length = 1066

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
 Frame = +2

Query: 314 EQDLEAP---AQHRSAQVKSRQD------NYSCDTKEAIDNALDTY*LSFIPEENQTDYQ 466
           ++DL AP   A H SA   + QD       YSCD K+A+D  +D   +  IP  N T   
Sbjct: 74  KKDLSAPMDAAYHPSAVEAAWQDWWEKCGYYSCDPKDAVDRPVDEKFVMVIPPPNVTGSL 133

Query: 467 H 469
           H
Sbjct: 134 H 134


>tr|Q2GW39|Q2GW39_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_07815 PE=4 SV=1
          Length = 592

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +3

Query: 51  SRVSQRNKQNPASKPLLPSIEFAPPQKMR--VKAP*KGEFPYTYSLKGERESLRTPLPDR 224
           +++SQ N     SKP+ P  +  PPQ +R    +P  G  P    L   R S   P+P R
Sbjct: 228 AQLSQHNPLMAESKPMGPRSDSQPPQLIRPATNSPFNG-MPPVAILPTNRPSSAAPIPPR 286

Query: 225 GEGSDHPTKDP 257
            +GS      P
Sbjct: 287 PQGSAENAPSP 297