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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921392
Clone id YMU001_000149_C11
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTGTTATCTGACAAAACTTATAATGTTTAAACGTAATTCACTTCATCGTGAGACGCAAG
GGTAGACCTAGTATCCTAGTTTAGCCTTACAAGATGTACAAAGAGGTGATGCTCTGCCTT
TGACAGAAACAAGCATTAGTGATATGCAGAATCAAAGCTTCAATGCCTGCTTACTCAAGA
TCAAAGCCTCAATATCAAGTCGCATTGGAGCTTAGCAGCCGAGAGACTGTTGCATGGATA
GGATTTCCAGAAAACCTCGTTGATGACTGCCTGCTGAGAGAGCGCCCATGATTCCAGGGA
GAACAGCTTCCAAACAGTTTTTTACTAATCTGAAGTATGGAAGCATTTACCTTTCGCAGC
GGCATTTCATAGCTTGCTCGGTAATATTTGACACCGCCCTCTAGCCGCTCTGTCTCATGT
ATATCTCCTGGTTGTTCATCAATTTGTACTCCCTCCTCTCTATCATCCATCTCTTCTCTA
GTTCCCTTGTACTCCTCTTCTGAGGA
■■Homology search results ■■ -
sp_hit_id Q8CDV6
Definition sp|Q8CDV6|CCD63_MOUSE Coiled-coil domain-containing protein 63 OS=Mus musculus
Align length 64
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921392|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_C11.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CDV6|CCD63_MOUSE Coiled-coil domain-containing protein 63 O...    32   1.3  
sp|P20758|IGHA1_GORGO Ig alpha-1 chain C region OS=Gorilla goril...    32   1.7  
sp|P31568|YCF2_OENPI Protein ycf2 (Fragment) OS=Oenothera picens...    31   3.8  
sp|P01876|IGHA1_HUMAN Ig alpha-1 chain C region OS=Homo sapiens ...    31   3.8  
sp|P31569|YCF2_OENVI Protein ycf2 (Fragment) OS=Oenothera villar...    30   4.9  
sp|B0Z5H1|YCF2_OENPA Protein ycf2 OS=Oenothera parviflora GN=ycf...    30   4.9  
sp|B0Z503|YCF2_OENBI Protein ycf2 OS=Oenothera biennis GN=ycf2-A...    30   4.9  
sp|B0Z4R9|YCF2_OENAR Protein ycf2 OS=Oenothera argillicola GN=yc...    30   4.9  
sp|Q7MAR9|CNPD_WOLSU 2',3'-cyclic-nucleotide 2'-phosphodiesteras...    30   6.5  

>sp|Q8CDV6|CCD63_MOUSE Coiled-coil domain-containing protein 63
           OS=Mus musculus GN=Ccdc63 PE=2 SV=2
          Length = 558

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 500 EEEYKGTREEMDDREEGVQIDEQPGDIHET--ERLEGGVKYYRASYEMPLRKVNASILQI 327
           +  ++GTR  +   EE ++   Q  DI+ET  + +   ++Y + S E   +K+N    +I
Sbjct: 366 QTSHEGTRSILKQMEEKLRKTTQEADIYETKYKEMSKTLEYLKNSVEKMFKKINCDATEI 425

Query: 326 SKKL 315
             KL
Sbjct: 426 LGKL 429


>sp|P20758|IGHA1_GORGO Ig alpha-1 chain C region OS=Gorilla gorilla
           gorilla GN=IGHA1 PE=1 SV=1
          Length = 353

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -1

Query: 380 RASYEMPLRKVNASILQISKKLFGSCSPWNHGRSLSRQSSTRFSGNPIHATVSR 219
           +++ E P  +       +S  L G   PWNHG++ +  ++   S  P+ AT+S+
Sbjct: 168 KSAVEGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSK 221


>sp|P31568|YCF2_OENPI Protein ycf2 (Fragment) OS=Oenothera picensis
           GN=ycf2 PE=3 SV=1
          Length = 721

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 503 SEEEYKGTREEMDDREEGVQIDEQPGDIHETERLEGGVK 387
           +EEE +GT EE++  EE V+  E+  +  E E +EG  K
Sbjct: 370 TEEEVEGTEEEVEGTEEEVEGTEEEVEGTEDEEVEGTEK 408



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 503 SEEEYKGTREEMDDREEGVQIDEQPGDIHETERLEG 396
           +EEE +GT EE++  EE V+  E+  +  E E +EG
Sbjct: 182 TEEEVEGTEEEVEGTEEEVEGTEEEVEGTEDEEVEG 217



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 503 SEEEYKGTREEMDDREEGVQIDEQPGDIHETERLEG 396
           +EEE +GT EE++  EE V+  E+  +  E E +EG
Sbjct: 218 TEEEVEGTEEEVEGTEEEVEGTEEEVEGTEDEEVEG 253



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 503 SEEEYKGTREEMDDREEGVQIDEQPGDIHETERLEG 396
           +EEE +GT EE++  EE V+  E+  +  E E +EG
Sbjct: 262 TEEEVEGTEEEVEGTEEEVEGTEEEVEGTEDEEVEG 297


>sp|P01876|IGHA1_HUMAN Ig alpha-1 chain C region OS=Homo sapiens
           GN=IGHA1 PE=1 SV=2
          Length = 353

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 329 ISKKLFGSCSPWNHGRSLSRQSSTRFSGNPIHATVSR 219
           +S  L G   PWNHG++ +  ++   S  P+ AT+S+
Sbjct: 185 VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSK 221


>sp|P31569|YCF2_OENVI Protein ycf2 (Fragment) OS=Oenothera
           villaricae GN=ycf2 PE=3 SV=1
          Length = 630

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 503 SEEEYKGTREEMDDREEGVQIDEQPGDIHETERLEG 396
           +EEE +GT EE++  EE V+  E+  +  E E +EG
Sbjct: 189 TEEEVEGTEEEVEGTEEEVEGTEEEVEGTEDEEVEG 224



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 503 SEEEYKGTREEMDDREEGVQIDEQPGDIHETERLEG 396
           +EEE +GT EE++  EE V+  E+  +  E E +EG
Sbjct: 232 TEEEVEGTEEEVEGTEEEVEGTEEEVEGTEDEEVEG 267


>sp|B0Z5H1|YCF2_OENPA Protein ycf2 OS=Oenothera parviflora GN=ycf2-A
            PE=3 SV=1
          Length = 2312

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 503  SEEEYKGTREEMDDREEGVQIDEQPGDIHETERLEG 396
            +EEE +GT EE++  EE V+  E+  +  E E +EG
Sbjct: 1884 TEEEVEGTEEEVEGTEEEVEGTEEEVEGTEDEEVEG 1919



 Score = 29.6 bits (65), Expect = 8.4
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 506  SSEEEYKGTREEMDDREEGVQ-IDEQPGDIHETERLEGGVK 387
            + +EE +GT EE++  EE V+  +++ G+  E E +EG  K
Sbjct: 1927 TEDEEVEGTEEEVEGTEEEVEGTEDEEGEGTEDEEVEGTEK 1967


>sp|B0Z503|YCF2_OENBI Protein ycf2 OS=Oenothera biennis GN=ycf2-A PE=3
            SV=1
          Length = 2325

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 503  SEEEYKGTREEMDDREEGVQIDEQPGDIHETERLEG 396
            +EEE +GT EE++  EE V+  E+  +  E E +EG
Sbjct: 1868 TEEEVEGTEEEVEGTEEEVEGTEEEVEGTEDEEVEG 1903


>sp|B0Z4R9|YCF2_OENAR Protein ycf2 OS=Oenothera argillicola GN=ycf2-A
            PE=3 SV=1
          Length = 2360

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 503  SEEEYKGTREEMDDREEGVQIDEQPGDIHETERLEG 396
            +EEE +GT EE++  EE V+  E+  +  E E +EG
Sbjct: 1946 TEEEVEGTEEEVEGTEEEVEGTEEEVEGTEDEEVEG 1981


>sp|Q7MAR9|CNPD_WOLSU 2',3'-cyclic-nucleotide 2'-phosphodiesterase
           OS=Wolinella succinogenes GN=WS0071 PE=3 SV=2
          Length = 523

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
 Frame = -1

Query: 500 EEEYKGTREEMDDRE----EGVQIDEQPGDIH-ETERLEGGVKYYRASY 369
           EE YK   +E +++     EG+ +D + G +H E ++L G +K YRASY
Sbjct: 288 EEVYKKVEQEFEEKVLEEGEGIVLDMELGYVHPELKKLIGRLK-YRASY 335
tr_hit_id B0S656
Definition tr|B0S656|B0S656_DANRE Novel protein (Fragment) OS=Danio rerio
Align length 50
Score (bit) 35.0
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921392|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_C11.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0S656|B0S656_DANRE Novel protein (Fragment) OS=Danio rerio G...    35   2.1  
tr|B0QXL3|B0QXL3_HAEPR Putative uncharacterized protein (Fragmen...    35   2.1  
tr|Q6ZC68|Q6ZC68_ORYSJ Os08g0109500 protein OS=Oryza sativa subs...    34   4.6  
tr|A3BNX9|A3BNX9_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.6  
tr|A2YQI3|A2YQI3_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.6  
tr|A9URK4|A9URK4_MONBE Predicted protein OS=Monosiga brevicollis...    34   4.6  
tr|A9SZX2|A9SZX2_PHYPA Single bromodomain-containing protein OS=...    33   7.8  

>tr|B0S656|B0S656_DANRE Novel protein (Fragment) OS=Danio rerio
           GN=CH211-139K8.4-001 PE=4 SV=1
          Length = 398

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = -1

Query: 500 EEEYKGTREEMDDREEGVQIDEQPGDIHETERLEGGVKYYRASYEMPLRK 351
           EEE +G +EE ++ EE  + D    ++ ET+ ++G ++  +A    PL+K
Sbjct: 211 EEEEEGEKEEGEEEEEEEKEDNDEEEVSETKEVQGKIEAQKAIRGKPLKK 260


>tr|B0QXL3|B0QXL3_HAEPR Putative uncharacterized protein (Fragment)
           OS=Haemophilus parasuis 29755 GN=HPS_05730 PE=4 SV=1
          Length = 130

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 196 QVALELSSRETVAWIGFPENLVDDCLLRERP*FQ--GEQLPNSFLLI*SMEAFTFRSG 363
           +V    S RET   + FPE ++ +CLLR+R  ++  G  LP  +  + S E FT ++G
Sbjct: 44  EVGTSKSLRETAKILNFPEKMMIECLLRDRVLYRQSGNLLP--YQTVHSKELFTVKTG 99


>tr|Q6ZC68|Q6ZC68_ORYSJ Os08g0109500 protein OS=Oryza sativa subsp.
           japonica GN=P0007D08.15 PE=4 SV=1
          Length = 590

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
 Frame = -1

Query: 494 EYKGTREEMDDREEGVQIDEQPGDIHETERLEGGVKYYRASY-------------EMPLR 354
           E +G+R   D++EE    D    + H + +   G +  +  +             + P++
Sbjct: 478 EDEGSRPYFDEKEEVDYTDLISQEEHTSSQPNDGSEIAQHQHKEPTETSQEIEMEDYPIQ 537

Query: 353 KVNASILQISKKLFGS--CSPWNHGRSLSRQSSTRFS--GNPIHATVSRLL 213
           K N S LQ+  +LF S   S +    SL RQ   + S  G+P+HA ++ ++
Sbjct: 538 KENQSFLQLCARLFPSNQSSVFRGRHSLFRQQQRQVSMKGSPLHAAITAIM 588


>tr|A3BNX9|A3BNX9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_024751 PE=4 SV=1
          Length = 341

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
 Frame = -1

Query: 494 EYKGTREEMDDREEGVQIDEQPGDIHETERLEGGVKYYRASY-------------EMPLR 354
           E +G+R   D++EE    D    + H + +   G +  +  +             + P++
Sbjct: 229 EDEGSRPYFDEKEEVDYTDLISQEEHTSSQPNDGSEIAQHQHKEPTETSQEIEMEDYPIQ 288

Query: 353 KVNASILQISKKLFGS--CSPWNHGRSLSRQSSTRFS--GNPIHATVSRLL 213
           K N S LQ+  +LF S   S +    SL RQ   + S  G+P+HA ++ ++
Sbjct: 289 KENQSFLQLCARLFPSNQSSVFRGRHSLFRQQQRQVSMKGSPLHAAITAIM 339


>tr|A2YQI3|A2YQI3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27549 PE=4 SV=1
          Length = 590

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
 Frame = -1

Query: 494 EYKGTREEMDDREEGVQIDEQPGDIHETERLEGGVKYYRASY-------------EMPLR 354
           E +G+R   D++EE    D    + H + +   G +  +  +             + P++
Sbjct: 478 EDEGSRPYFDEKEEVDYTDLISQEEHTSSQPNDGSEIAQHQHKEPTETSQEIEMEDYPIQ 537

Query: 353 KVNASILQISKKLFGS--CSPWNHGRSLSRQSSTRFS--GNPIHATVSRLL 213
           K N S LQ+  +LF S   S +    SL RQ   + S  G+P+HA ++ ++
Sbjct: 538 KENQSFLQLCARLFPSNQSSVFRGRHSLFRQQQRQVSMKGSPLHAAITAIM 588


>tr|A9URK4|A9URK4_MONBE Predicted protein OS=Monosiga brevicollis
           GN=36052 PE=4 SV=1
          Length = 369

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = -1

Query: 440 DEQPGDIHETERLEGGVKYYRASYEMPLRKVNASILQISKKLFGSCSPWNHGRSLSRQSS 261
           D  PG IH+ E   G ++ +  SY       +A  L++ +K FG+  P +   +L+   S
Sbjct: 141 DADPGSIHKAELRLGALQSHEDSYYQHALASHAQALELKRKAFGNLHP-SVAVTLTHMGS 199

Query: 260 TRF-SGNPIHATVS 222
           T    GN + A  S
Sbjct: 200 THCQQGNTLEALAS 213


>tr|A9SZX2|A9SZX2_PHYPA Single bromodomain-containing protein
           OS=Physcomitrella patens subsp. patens GN=BRD1503 PE=4
           SV=1
          Length = 672

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
 Frame = -1

Query: 377 ASYEMPLRKVNASILQISKKLFGS--CSPWNHGRSLSRQSS 261
           A+Y++PLRK++  ++++S+ L GS   S WN  RSL   S+
Sbjct: 612 ANYQLPLRKLDPYVVEMSRILLGSKPGSIWNRPRSLGYVSA 652