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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921402
Clone id YMU001_000149_D10
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCATGTGTGGAAGTCCTTAACTTTGGCTTAAAGCTTTGATTGCTCGTGTAAATATGCA
TCAGCTGTTGCTGAGCTGACCTCAAAAAAACGCTTCACACATGATAAGCAATCATTCAGC
TGTTTAGTTTGAGGCTTATCACTTTTCTTTCCTGTGGGGAGGTACATGTGTGTTTCTTTC
TTAGTTGTGGTCGGCAATTATCTTGGTTGGCTTTTTGGAAATGATGGAAGCACCGTTGGA
AGCATCTGGAAACAAGAGCATGTCTTGTTCACTTTTGTTTAGAACTCTTTTCAAGGTGTA
TTAGAGTGATTATACACCTCTCAGAAGTCCATGGCTTTAGTATATGTTTGCTGTGGAAAG
TGTCGAAGCCAGAGCCATGATGCTGTTTTTTTCATGGACGTTCAGCAAATCCTTAAAGCA
TTGGACTGCTAATCTATAGCAAAATCATTGTCCCTCGACATGACTTTGTTCAATTGTTGG
TGCCACGACAAGCGTCATGGCCATTGGATACGACAAAGAGCTCTC
■■Homology search results ■■ -
sp_hit_id Q04G78
Definition sp|Q04G78|RL16_OENOB 50S ribosomal protein L16 OS=Oenococcus oeni (strain BAA-331 / PSU-1)
Align length 42
Score (bit) 30.4
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921402|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_D10.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04G78|RL16_OENOB 50S ribosomal protein L16 OS=Oenococcus oen...    30   5.3  
sp|A6LLM0|RL16_THEM4 50S ribosomal protein L16 OS=Thermosipho me...    30   9.1  
sp|Q80ZF8|BAI3_MOUSE Brain-specific angiogenesis inhibitor 3 OS=...    30   9.1  
sp|O60242|BAI3_HUMAN Brain-specific angiogenesis inhibitor 3 OS=...    30   9.1  

>sp|Q04G78|RL16_OENOB 50S ribosomal protein L16 OS=Oenococcus oeni
           (strain BAA-331 / PSU-1) GN=rplP PE=3 SV=1
          Length = 143

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 464 VMSRDNDFAID*QSNALRIC*TSMKKTASWLWLRHFPQQTYT 339
           + S +N++  + Q  A RI  T   K    +W++ FPQ++YT
Sbjct: 34  LQSLENNWITNRQIEAARIAITRYMKRGGKVWIKIFPQKSYT 75


>sp|A6LLM0|RL16_THEM4 50S ribosomal protein L16 OS=Thermosipho
           melanesiensis (strain BI429 / DSM 12029) GN=rplP PE=3
           SV=1
          Length = 142

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 428 QSNALRIC*TSMKKTASWLWLRHFPQQTYTK 336
           Q  A RI  T   K +  LW+R FP ++YTK
Sbjct: 46  QIEACRIAITRTLKKSGKLWIRIFPDKSYTK 76


>sp|Q80ZF8|BAI3_MOUSE Brain-specific angiogenesis inhibitor 3 OS=Mus
            musculus GN=Bai3 PE=1 SV=1
          Length = 1522

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 237  WKHL--ETRACLVHFCLELFSRCIRVIIHLSEVHGFSIC 347
            W+++  E    L++FCL + S  I +++  ++ H  SIC
Sbjct: 903  WRYIRSERSIILINFCLSIISSNILILVGQTQTHNKSIC 941


>sp|O60242|BAI3_HUMAN Brain-specific angiogenesis inhibitor 3 OS=Homo
            sapiens GN=BAI3 PE=1 SV=1
          Length = 1522

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 237  WKHL--ETRACLVHFCLELFSRCIRVIIHLSEVHGFSIC 347
            W+++  E    L++FCL + S  I +++  ++ H  SIC
Sbjct: 903  WRYIRSERSIILINFCLSIISSNILILVGQTQTHNKSIC 941
tr_hit_id Q4S4H6
Definition tr|Q4S4H6|Q4S4H6_TETNG Chromosome 2 SCAF14738, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 50
Score (bit) 34.7
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921402|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_D10.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4S4H6|Q4S4H6_TETNG Chromosome 2 SCAF14738, whole genome shot...    35   3.0  
tr|B4FIN4|B4FIN4_MAIZE Putative uncharacterized protein OS=Zea m...    34   4.0  
tr|Q4Y3K6|Q4Y3K6_PLACH Putative uncharacterized protein (Fragmen...    33   6.6  
tr|Q2H499|Q2H499_CHAGB Putative uncharacterized protein OS=Chaet...    33   6.6  
tr|A3LYD9|A3LYD9_PICST Hypothetical transcription factor OS=Pich...    33   6.6  
tr|Q8XXT8|Q8XXT8_RALSO Putative fatty acid desaturase; transmemb...    33   6.7  
tr|B8GU70|B8GU70_9GAMM ATP-dependent helicase HrpA OS=Thioalkali...    33   8.6  
tr|Q2JP06|Q2JP06_SYNJB Putative uncharacterized protein OS=Synec...    33   8.8  

>tr|Q4S4H6|Q4S4H6_TETNG Chromosome 2 SCAF14738, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00024175001
           PE=4 SV=1
          Length = 2726

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 239 PTVLPSFPK-SQPR*LPTTTKKETHMYLPTGKKSDKPQTKQLNDCLSCVK 93
           P+  PS P  + P  +PTTT +    +   G+K DK QT Q++DC S VK
Sbjct: 494 PSTTPSIPPPAPPTPVPTTTPQPATPFDRPGEKEDK-QTFQVSDCRSLVK 542


>tr|B4FIN4|B4FIN4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 567

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 169 CVSFLVVVGNYLGWLFGNDGSTVGSIWKQEHVLFTFV 279
           C+ +L++ G+ L  LF N   +VGS+    HVLFT +
Sbjct: 270 CIEYLILEGDNLSKLFPNAHLSVGSLTMNSHVLFTIL 306


>tr|Q4Y3K6|Q4Y3K6_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000379.01.0 PE=4 SV=1
          Length = 527

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = -3

Query: 364 DTFHSKHILKPWTSERCIITLIHLEKSSKQK*TRHALVS---RCFQRCFHHFQKANQD 200
           DTF  KH++    S  C I + H E  S +  + H L+S   RC ++    F   N+D
Sbjct: 415 DTFDIKHVINSIKSICCSILIFHSENDSYKNSSSHILLSNAKRCNKKAAFSFDFMNED 472


>tr|Q2H499|Q2H499_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_06516 PE=4 SV=1
          Length = 549

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = +3

Query: 246 LETRACLVHFCLELFSRCIRVIIHLSEVHGFSICLLWKVSKPEP*CCFFHG 398
           ++T AC+  FCL+    C  V  H   VH F   L W   K +P  CF HG
Sbjct: 413 IKTAACVTLFCLQ--KPCFAVDTH---VHKFCRWLGWVPDKADPDNCFRHG 458


>tr|A3LYD9|A3LYD9_PICST Hypothetical transcription factor OS=Pichia
           stipitis GN=PICST_68205 PE=4 SV=2
          Length = 756

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -3

Query: 358 FHSKHILKPWTSE--RCIITL-IHLEKSSKQK*TRHALVSRCFQRCFHHFQKANQDNCRP 188
           FH+K+ +KPW SE  R I  L I +E+S   K     +V +C         +A   NC+ 
Sbjct: 20  FHNKNDIKPWLSEKLREIAGLQIVIERSDTSK-----IVFKCKNNAKKEIVEAKTSNCKV 74

Query: 187 QLRKKHTC 164
             R++ TC
Sbjct: 75  ASRRQITC 82


>tr|Q8XXT8|Q8XXT8_RALSO Putative fatty acid desaturase;
           transmembrane protein OS=Ralstonia solanacearum
           GN=RSc2025 PE=4 SV=1
          Length = 313

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 85  KKRFTHDKQSFSCLV*GLSLFFPVGRYMCVSFLVVVGNYLGWLFGNDGSTVGSIWKQEHV 264
           K++    ++ FS     L+L + +    CV   ++VG Y+ W F  DGS   + W  E V
Sbjct: 14  KEKLASFRREFSARNHWLALLYVI----CVPASMLVGGYMAWSFSVDGSLGAARWVMEAV 69

Query: 265 LFTF 276
           +  F
Sbjct: 70  VCIF 73


>tr|B8GU70|B8GU70_9GAMM ATP-dependent helicase HrpA
           OS=Thioalkalivibrio sp. HL-EbGR7 GN=Tgr7_0254 PE=4 SV=1
          Length = 1290

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
 Frame = +3

Query: 108 AIIQLFSLRLITFLS--------------CGEVHVCFFLSCGRQLSWLAFWK*WKHRWKH 245
           A+++L  LR++ FL+                E H  +  +    LSWL  W  W+ + +H
Sbjct: 505 AVVEL--LRIVAFLAIQDPRERPAEKRQAADEAHARYREAGSDFLSWLKLWDDWREQQRH 562

Query: 246 LETRACLVHFCLELFSRCIRV 308
           L TRA L  +C E F   IR+
Sbjct: 563 L-TRAKLRAWCREGFLSFIRM 582


>tr|Q2JP06|Q2JP06_SYNJB Putative uncharacterized protein
           OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
           GN=CYB_0502 PE=4 SV=1
          Length = 234

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 145 FFPVGRYMCVSFLVVVGNYLGWLFGNDGSTVGSIWKQEHVLFTFV*NSF 291
           F+P  +Y+CV+  V+ G  L         ++GS+W+QEH L     NS+
Sbjct: 137 FWPEVKYVCVAGRVIQGQRL---------SLGSLWRQEHYLAWLAYNSY 176