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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921404
Clone id YMU001_000149_D12
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCAAGCATACATAAGACTGCATTCCGTACAGCCCTAATATTTCATCCTTTCATAGGAAT
TTCTTGACGACATGTTGGTCTTCTCTCACACAAAGGAAAAGCATAAATAGCACTTGCCGA
TTGTGTTCAAAGAATTGCCCATAGTGTAATAACACTTGTCAAATCGCGTATACAAACCAT
TTATGCAAGATGGTACATGAAATCTAATCTAATGGACTCATCCGAACATGCACATCTTGC
GAACAAGCTCACAAAATTGCCAGCACTAATTCTCCTAGGATTCTAGACACTCCTATCTAG
GAAGAAGGGGAAAACTGGCTCTGGAAGTCGATGAAGGATGTCCACATGGCATACAAAGCC
ATGTGCACGTGACACGATTCCTCTAACCTAAAACTACATGCACGTCATGCCATATGCCCA
CCGTAGTATAACAACATCTATCAAATCCATTTATGCAAGAGGGTTTCAAAACTGGAAAAC
CTAATCTAATGGACTCGTCTAGACATGCAGGTCCTGCAAACAGGCTCACAAATTGCTAGT
ACTAA
■■Homology search results ■■ -
sp_hit_id P91341
Definition sp|P91341|PWP2_CAEEL Periodic tryptophan protein 2 homolog OS=Caenorhabditis elegans
Align length 45
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921404|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_D12.
         (545 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P91341|PWP2_CAEEL Periodic tryptophan protein 2 homolog OS=Ca...    32   2.0  
sp|Q4W7G8|KR134_MACFU Keratin-associated protein 13-4 OS=Macaca ...    31   3.4  
sp|Q4W7G9|KR134_MACFA Keratin-associated protein 13-4 OS=Macaca ...    31   3.4  
sp|Q4W7G7|KR134_CEBAP Keratin-associated protein 13-4 OS=Cebus a...    31   3.4  
sp|P51830|ADCY9_MOUSE Adenylate cyclase type 9 OS=Mus musculus G...    30   9.9  

>sp|P91341|PWP2_CAEEL Periodic tryptophan protein 2 homolog
           OS=Caenorhabditis elegans GN=F55F8.3 PE=2 SV=2
          Length = 910

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +2

Query: 113 LADCVQRIAHSVITLVKSRIQTIYA----RWYMKSNLMDSSEHAH 235
           + +C++  + S I LV S +  +YA    +W ++ N+M S+ H H
Sbjct: 763 ITECLESTSISQIPLVASSLPLMYAERLLKWMVEGNVMSSTRHVH 807


>sp|Q4W7G8|KR134_MACFU Keratin-associated protein 13-4 OS=Macaca
           fuscata fuscata GN=KRTAP13-4 PE=3 SV=1
          Length = 156

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = +1

Query: 7   HT*DCIPYS-----PNI----SSFHRNFLTTCWSSLTQRKSINSTCRLCSKNCP*CNNTC 159
           H   C PYS     P+I    SS +RN   TCW   + RKS     R  S  C  C  TC
Sbjct: 20  HYPGCNPYSTALCSPSICQLGSSLYRNCQKTCWEPTSCRKSCYR--RRTSMLCSPCQTTC 77


>sp|Q4W7G9|KR134_MACFA Keratin-associated protein 13-4 OS=Macaca
           fascicularis GN=KRTAP13-4 PE=3 SV=1
          Length = 156

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = +1

Query: 7   HT*DCIPYS-----PNI----SSFHRNFLTTCWSSLTQRKSINSTCRLCSKNCP*CNNTC 159
           H   C PYS     P+I    SS +RN   TCW   + RKS     R  S  C  C  TC
Sbjct: 20  HYPGCNPYSTALCSPSICQLGSSLYRNCQKTCWEPTSCRKSCYR--RRTSMLCSPCQTTC 77


>sp|Q4W7G7|KR134_CEBAP Keratin-associated protein 13-4 OS=Cebus
           apella GN=KRTAP13-4 PE=3 SV=1
          Length = 156

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = +1

Query: 7   HT*DCIPYS-----PNI----SSFHRNFLTTCWSSLTQRKSINSTCRLCSKNCP*CNNTC 159
           H   C PYS     P+I    SS +RN   TCW   + RKS     R  S  C  C  TC
Sbjct: 20  HYPGCNPYSTALCSPSICQLGSSLYRNCQKTCWEPTSCRKSCYR--RRTSMLCSPCQTTC 77


>sp|P51830|ADCY9_MOUSE Adenylate cyclase type 9 OS=Mus musculus
           GN=Adcy9 PE=1 SV=1
          Length = 1353

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 184 INGLYTRFDK-CYYTMGNSLNTIGKCYLC 101
           +N L+ RFD+ C  T    ++T+G CY C
Sbjct: 419 LNDLFGRFDRLCEQTKCEKISTLGDCYYC 447
tr_hit_id A0BR77
Definition tr|A0BR77|A0BR77_PARTE Chromosome undetermined scaffold_122, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 99
Score (bit) 39.3
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921404|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_D12.
         (545 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0BR77|A0BR77_PARTE Chromosome undetermined scaffold_122, who...    39   0.14 
tr|A0D6J3|A0D6J3_PARTE Chromosome undetermined scaffold_4, whole...    37   0.89 
tr|Q94H22|Q94H22_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    36   1.2  
tr|Q8H8R0|Q8H8R0_ORYSJ Putative polyprotein OS=Oryza sativa subs...    36   1.2  
tr|Q10IC2|Q10IC2_ORYSJ Retrotransposon protein, putative, Ty3-gy...    36   1.2  
tr|Q53L75|Q53L75_ORYSJ Retrotransposon protein, putative, Ty3-gy...    36   1.5  
tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1        35   2.6  
tr|Q23JG4|Q23JG4_TETTH Leishmanolysin family protein OS=Tetrahym...    35   2.6  
tr|Q7Y0A9|Q7Y0A9_ORYSJ Putative polyprotein (Retrotransposon pro...    35   3.4  
tr|Q60DR1|Q60DR1_ORYSJ Putative polyprotein OS=Oryza sativa subs...    35   3.4  
tr|Q53N07|Q53N07_ORYSJ Retrotransposon protein, putative, Ty3-gy...    35   3.4  
tr|Q2QUB7|Q2QUB7_ORYSJ Retrotransposon protein, putative, Ty3-gy...    35   3.4  
tr|Q8S5K3|Q8S5K3_ORYSJ Putative retroelement OS=Oryza sativa sub...    34   4.4  
tr|Q33AK4|Q33AK4_ORYSJ Retrotransposon protein, putative, Ty3-gy...    34   4.4  
tr|A0CEB1|A0CEB1_PARTE Chromosome undetermined scaffold_170, who...    34   4.4  
tr|Q9AXC5|Q9AXC5_ANTHI Putative uncharacterized protein OS=Antir...    34   5.8  
tr|A5BWN8|A5BWN8_VITVI Putative uncharacterized protein OS=Vitis...    34   5.8  
tr|B8MLX3|B8MLX3_9EURO Retrovirus polyprotein, putative OS=Talar...    34   5.8  
tr|Q6UUS2|Q6UUS2_ORYSJ Putative gag-pol protein OS=Oryza sativa ...    33   7.6  
tr|A5C490|A5C490_VITVI Putative uncharacterized protein OS=Vitis...    33   7.6  
tr|A5B2Y8|A5B2Y8_VITVI Putative uncharacterized protein OS=Vitis...    33   7.6  
tr|A4R5Z9|A4R5Z9_MAGGR Putative uncharacterized protein OS=Magna...    33   7.6  
tr|A4R3E9|A4R3E9_MAGGR Putative uncharacterized protein OS=Magna...    33   7.6  
tr|B7R7D1|B7R7D1_9THEO Putative uncharacterized protein OS=Carbo...    33   9.9  
tr|Q9AYB5|Q9AYB5_ORYSA Similar to Transposon MAGGYgagandpolgeneh...    33   9.9  
tr|Q94HN8|Q94HN8_ORYSA Putative retroelement OS=Oryza sativa GN=...    33   9.9  
tr|Q94HN3|Q94HN3_ORYSA Putative retroelement OS=Oryza sativa GN=...    33   9.9  
tr|Q8W5E8|Q8W5E8_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    33   9.9  
tr|Q8SB03|Q8SB03_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    33   9.9  
tr|Q8S837|Q8S837_ORYSA Putative polyprotein OS=Oryza sativa GN=O...    33   9.9  

>tr|A0BR77|A0BR77_PARTE Chromosome undetermined scaffold_122, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00031274001 PE=4 SV=1
          Length = 4719

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
 Frame = +1

Query: 19   CIPYSPNISSFHRNFLTTCWSSLTQRKSINSTCRLCSKNCP*CNNT-----CQIAY---- 171
            C       S   +N+ T C+    Q    N TC++C + C  C N+     C   Y    
Sbjct: 970  CSNLCKTCSQNDKNYCTACYDGFYQPTGQN-TCKVCIEPCKTCKNSTSGDQCLSCYSGDF 1028

Query: 172  ---TNHLCKMV-HEI*SNGLIRTCTSCEQAHKIASTNSP 276
               TN LCK   +   S   + TC +CE+ + +   N+P
Sbjct: 1029 WDDTNFLCKQCQYPCVSCTNLTTCKTCEKGYFLTDPNTP 1067


>tr|A0D6J3|A0D6J3_PARTE Chromosome undetermined scaffold_4, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00001701001 PE=4 SV=1
          Length = 2662

 Score = 36.6 bits (83), Expect = 0.89
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +1

Query: 19   CIPYSPNISSFHRNFLTTCWSSLTQRKSINSTCRLCSKNCP*CNNTCQIAYTNHLCKMVH 198
            C   S N   + ++ + TC +++T   +   TC  C+ NC  C N      T   CK  +
Sbjct: 1101 CTVCSTNFYLYQQSCIDTCPANITITNTQQQTCDTCTNNCQTCQNQTSFCIT---CKTNY 1157

Query: 199  EI*SNGLIRTC 231
             + +N  I  C
Sbjct: 1158 YLYNNTCISIC 1168


>tr|Q94H22|Q94H22_ORYSA Putative polyprotein OS=Oryza sativa
           GN=OSJNBa0077G22.16 PE=4 SV=1
          Length = 1473

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 13/26 (50%), Positives = 22/26 (84%)
 Frame = +3

Query: 60  FLDDMLVFSHTKEKHK*HLPIVFKEL 137
           F+DD+L++SHTKE+H+ HL +  ++L
Sbjct: 845 FIDDILIYSHTKEEHEEHLRLALEKL 870


>tr|Q8H8R0|Q8H8R0_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0057E11.3 PE=4 SV=1
          Length = 1473

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 13/26 (50%), Positives = 22/26 (84%)
 Frame = +3

Query: 60  FLDDMLVFSHTKEKHK*HLPIVFKEL 137
           F+DD+L++SHTKE+H+ HL +  ++L
Sbjct: 845 FIDDILIYSHTKEEHEEHLRLALEKL 870


>tr|Q10IC2|Q10IC2_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g35830 PE=4 SV=1
          Length = 1475

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 13/26 (50%), Positives = 22/26 (84%)
 Frame = +3

Query: 60  FLDDMLVFSHTKEKHK*HLPIVFKEL 137
           F+DD+L++SHTKE+H+ HL +  ++L
Sbjct: 845 FIDDILIYSHTKEEHEEHLRLALEKL 870


>tr|Q53L75|Q53L75_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
            subclass OS=Oryza sativa subsp. japonica
            GN=LOC_Os11g23960 PE=4 SV=1
          Length = 1640

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +3

Query: 60   FLDDMLVFSHTKEKHK*HLPIVFKEL 137
            F+DDML++S TKE+HK HL +  ++L
Sbjct: 1009 FIDDMLIYSKTKEEHKEHLHLALEKL 1034


>tr|Q9XE85|Q9XE85_SORBI Polyprotein OS=Sorghum bicolor PE=4 SV=1
          Length = 1484

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 15/26 (57%), Positives = 21/26 (80%)
 Frame = +3

Query: 60  FLDDMLVFSHTKEKHK*HLPIVFKEL 137
           F+DD+LVFS TKE+H  HL +V ++L
Sbjct: 712 FIDDILVFSKTKEEHAEHLRLVLQKL 737


>tr|Q23JG4|Q23JG4_TETTH Leishmanolysin family protein OS=Tetrahymena
           thermophila SB210 GN=TTHERM_00979930 PE=4 SV=1
          Length = 965

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 26/86 (30%), Positives = 36/86 (41%)
 Frame = +1

Query: 19  CIPYSPNISSFHRNFLTTCWSSLTQRKSINSTCRLCSKNCP*CNNTCQIAYTNHLCKMVH 198
           C+  + N+     N  ++   S   + SIN TC  CS  C     TC  A T  LC   +
Sbjct: 693 CLSCAQNLYLQSGNTCSSNCPSGFYKNSINMTCTACSTGC----KTCSDANTCTLCDSSN 748

Query: 199 EI*SNGLIRTCTSCEQAHKIASTNSP 276
                G   TCT C  A    S+++P
Sbjct: 749 GYRLQG--NTCTLCAPACATCSSSNP 772


>tr|Q7Y0A9|Q7Y0A9_ORYSJ Putative polyprotein (Retrotransposon
           protein, putative, Ty3-gypsy subclass) OS=Oryza sativa
           subsp. japonica GN=OSJNBa0075A22.6 PE=4 SV=1
          Length = 1564

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +3

Query: 60  FLDDMLVFSHTKEKHK*HLPIVFKEL 137
           F+DD+L++S TKE+H+ HL +  K+L
Sbjct: 830 FIDDILIYSRTKEEHEEHLRLALKKL 855


>tr|Q60DR1|Q60DR1_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0002L02.13 PE=4 SV=1
          Length = 1727

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +3

Query: 60  FLDDMLVFSHTKEKHK*HLPIVFKEL 137
           F+DD+L++S TKE+HK HL +  ++L
Sbjct: 867 FIDDILIYSRTKEEHKEHLRLALEKL 892