| BP921405 |
| Clone id |
YMU001_000149_E01 |
| Library |
YMU01 |
| Length |
621 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000149_E01. |
| Accession |
BP921405 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
GCCAGCCTGAACACTACAGTTACTAAAAACTCCTTCCTGCATTGTGGAGTGTCTTTCAAA
TAACAACACTCTCGTCAAGCAAGAAGACGATGCACACATCTGTGCCGTTTCATAGTGCTG
TACAATGTTTCACAAGTTTGTTGTGAAGAAGGGTTGATACTCCAAGACTCCGCGTGCGAC
GTTCCATGTACATACTTCTGTGGCACATCAGATCTGTACGCTCAAATTTATTTGCTTTGT
ATGCACAAGGTCACTATATGTCATAGATCTGTCTTCTAACCATCTTTCATATCCTCTAGT
GACTGCTCGATGAGCTCAGCAAGCAAAGAGTCCTCACACGAGTTTTCTGAGTTTGTGGTA
CTCATCCGAATGCAATCAGCCTCCTCTTGTACTGAAGACCTTCTCTTCTTTACCGAGCCA
TCATCCACAACACATAATGCTGCAGCTTGCATTGGTCCTTTCGCTCCTCTTATCACAAAT
TTGCCAGTTGGAATGTCACAAAACAGCATCATGTAGTCACCCTCCTTCAGATCATAAGAC
TTCACAAAATCACCTGCAGCCAATAGATAGCATCTCTCCCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P37398 |
| Definition |
sp|P37398|VIV_ORYSJ Protein viviparous homolog OS=Oryza sativa subsp. japonica |
| Align length |
38 |
| Score (bit) |
45.4 |
| E-value |
0.0002 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921405|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_E01.
(621 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P37398|VIV_ORYSJ Protein viviparous homolog OS=Oryza sativa s... 45 2e-04
sp|P26307|VIV1_MAIZE Regulatory protein viviparous-1 OS=Zea mays... 44 9e-04
sp|Q01593|ABI3_ARATH Protein ABSCISIC ACID-INSENSITIVE 3 OS=Arab... 43 0.001
sp|Q8TGB2|GPI7_CANAL GPI ethanolamine phosphate transferase 2 OS... 32 2.6
sp|Q62746|SYT6_RAT Synaptotagmin-6 OS=Rattus norvegicus GN=Syt6 ... 31 4.5
sp|Q9R0N8|SYT6_MOUSE Synaptotagmin-6 OS=Mus musculus GN=Syt6 PE=... 31 4.5
sp|Q5T7P8|SYT6_HUMAN Synaptotagmin-6 OS=Homo sapiens GN=SYT6 PE=... 31 4.5
sp|P32771|FADH_YEAST S-(hydroxymethyl)glutathione dehydrogenase ... 31 5.9
sp|Q925C0|SYT9_RAT Synaptotagmin-9 OS=Rattus norvegicus GN=Syt9 ... 30 7.7
sp|Q9R0N9|SYT9_MOUSE Synaptotagmin-9 OS=Mus musculus GN=Syt9 PE=... 30 7.7
sp|Q86SS6|SYT9_HUMAN Synaptotagmin-9 OS=Homo sapiens GN=SYT9 PE=... 30 7.7
>sp|P37398|VIV_ORYSJ Protein viviparous homolog OS=Oryza sativa
subsp. japonica GN=VP1 PE=2 SV=2
Length = 726
Score = 45.4 bits (106), Expect = 2e-04
Identities = 20/38 (52%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAK 459
YLL GDFV+S +L+EGD+++++ DI +GK++IRG K
Sbjct: 598 YLLENTGDFVRSNELQEGDFIVIYSDIKSGKYLIRGVK 635
>sp|P26307|VIV1_MAIZE Regulatory protein viviparous-1 OS=Zea mays
GN=VP1 PE=2 SV=1
Length = 691
Score = 43.5 bits (101), Expect = 9e-04
Identities = 18/38 (47%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAK 459
YLL G+FV+S +L+EGD+++++ D+ +GK++IRG K
Sbjct: 580 YLLENTGEFVRSNELQEGDFIVIYSDVKSGKYLIRGVK 617
>sp|Q01593|ABI3_ARATH Protein ABSCISIC ACID-INSENSITIVE 3
OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1
Length = 720
Score = 43.1 bits (100), Expect = 0.001
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAK 459
YLL GDFVK+ L+EGD+++++ D+ GK++IRG K
Sbjct: 635 YLLENTGDFVKTNGLQEGDFIVIYSDVKCGKYLIRGVK 672
>sp|Q8TGB2|GPI7_CANAL GPI ethanolamine phosphate transferase 2
OS=Candida albicans GN=LAS21 PE=3 SV=2
Length = 892
Score = 32.0 bits (71), Expect = 2.6
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 125 MFHKFVVKKG*YSKTPRATFHVHTSVAHQIC--TLKFICFVCTRSLYVIDLSS 277
MF KF + K Y KT R ++ T +C L F C T SL +DLS+
Sbjct: 706 MFAKFALSKLIYRKTNRIDQYILTVTMTVLCLQNLTFFCMGNTNSLATVDLSN 758
>sp|Q62746|SYT6_RAT Synaptotagmin-6 OS=Rattus norvegicus GN=Syt6
PE=2 SV=1
Length = 511
Score = 31.2 bits (69), Expect = 4.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 172 ACDVPCTYFCGTSDLYAQIYLLCMHKV---TICHRSVF*P 282
A D+P FCG+SD Y +IYLL K T HR P
Sbjct: 254 AFDLPAKDFCGSSDPYVKIYLLPDRKCKLQTRVHRKTLNP 293
>sp|Q9R0N8|SYT6_MOUSE Synaptotagmin-6 OS=Mus musculus GN=Syt6 PE=2
SV=1
Length = 511
Score = 31.2 bits (69), Expect = 4.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 172 ACDVPCTYFCGTSDLYAQIYLLCMHKV---TICHRSVF*P 282
A D+P FCG+SD Y +IYLL K T HR P
Sbjct: 254 AFDLPAKDFCGSSDPYVKIYLLPDRKCKLQTRVHRKTLNP 293
>sp|Q5T7P8|SYT6_HUMAN Synaptotagmin-6 OS=Homo sapiens GN=SYT6 PE=1
SV=3
Length = 510
Score = 31.2 bits (69), Expect = 4.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 172 ACDVPCTYFCGTSDLYAQIYLLCMHKV---TICHRSVF*P 282
A D+P FCG+SD Y +IYLL K T HR P
Sbjct: 253 AFDLPAKDFCGSSDPYVKIYLLPDRKCKLQTRVHRKTLNP 292
>sp|P32771|FADH_YEAST S-(hydroxymethyl)glutathione dehydrogenase
OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1
Length = 386
Score = 30.8 bits (68), Expect = 5.9
Identities = 25/92 (27%), Positives = 46/92 (50%)
Frame = -2
Query: 554 GDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAKGPMQAAALCVVDDGSVKKRRSSVQEEAD 375
G +K+ ++++GD + +F G VI+GAK ++ A+ + D + KK++
Sbjct: 186 GAALKTANVQKGDTVAVFGCGTVGLSVIQGAK--LRGASKIIAIDINNKKKQY------- 236
Query: 374 CIRMSTTNSENSCEDSLLAELIEQSLEDMKDG 279
C + T+ N ED + I + L +M DG
Sbjct: 237 CSQFGATDFVNPKEDLAKDQTIVEKLIEMTDG 268
>sp|Q925C0|SYT9_RAT Synaptotagmin-9 OS=Rattus norvegicus GN=Syt9
PE=2 SV=1
Length = 491
Score = 30.4 bits (67), Expect = 7.7
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +1
Query: 73 RQARRRCTHLCRFIVLYNVSQVCCEEGLILQ-DSACDVPCTYFCGTSDLYAQIYLLCMHK 249
R++ + FI+ Y+ C E LI++ A ++P F GTSD Y +IYLL K
Sbjct: 214 RRSNSKACGKLNFILKYD----CDLEQLIVKIHKAVNLPAKDFSGTSDPYVKIYLLPDRK 269
Query: 250 V---TICHRSVF*P 282
T HR P
Sbjct: 270 TKHQTKVHRKTLNP 283
>sp|Q9R0N9|SYT9_MOUSE Synaptotagmin-9 OS=Mus musculus GN=Syt9 PE=1
SV=1
Length = 491
Score = 30.4 bits (67), Expect = 7.7
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +1
Query: 73 RQARRRCTHLCRFIVLYNVSQVCCEEGLILQ-DSACDVPCTYFCGTSDLYAQIYLLCMHK 249
R++ + FI+ Y+ C E LI++ A ++P F GTSD Y +IYLL K
Sbjct: 214 RRSNSKACGKLNFILKYD----CDLEQLIVKIHKAVNLPAKDFSGTSDPYVKIYLLPDRK 269
Query: 250 V---TICHRSVF*P 282
T HR P
Sbjct: 270 TKHQTKVHRKTLNP 283
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B4XEV7 |
| Definition |
tr|B4XEV7|B4XEV7_PEA ABI3-like factor OS=Pisum sativum |
| Align length |
62 |
| Score (bit) |
48.1 |
| E-value |
0.0004 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921405|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_E01.
(621 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|B4XEV7|B4XEV7_PEA ABI3-like factor OS=Pisum sativum GN=ABI3 P... 48 4e-04
tr|B4XEV5|B4XEV5_PEA ABI3-like factor OS=Pisum sativum GN=ABI3 P... 48 4e-04
tr|B4XEV4|B4XEV4_PEA ABI3-like factor OS=Pisum sativum GN=ABI3 P... 48 4e-04
tr|B4XEV3|B4XEV3_PEA ABI3-like factor OS=Pisum sativum GN=ABI3 P... 48 4e-04
tr|Q9FNS6|Q9FNS6_9CONI VP1/ABI3-like protein OS=Callitropsis noo... 48 5e-04
tr|Q8LP13|Q8LP13_PEA ABA insensitive 3 OS=Pisum sativum GN=abi3 ... 47 7e-04
tr|B8YCS8|B8YCS8_WHEAT Viviparous 1 protein OS=Triticum aestivum... 47 0.001
tr|Q5K5C2|Q5K5C2_HORVU Viviparous-1 protein OS=Hordeum vulgare G... 46 0.002
tr|Q9M3N7|Q9M3N7_WHEAT VIVIPAROUS1 protein OS=Triticum aestivum ... 46 0.002
tr|Q9M3N6|Q9M3N6_WHEAT VIVIPAROUS1 protein OS=Triticum aestivum ... 46 0.002
tr|Q9M3N5|Q9M3N5_WHEAT VIVIPAROUS1 protein OS=Triticum aestivum ... 46 0.002
tr|Q9AVK5|Q9AVK5_WHEAT Transcription factor VP-1 homologue OS=Tr... 46 0.002
tr|A1XPK8|A1XPK8_WHEAT VIVIPAROUS1 protein OS=Triticum aestivum ... 46 0.002
tr|A0JBT4|A0JBT4_TRIMO B3 type transcription factor (Fragment) O... 46 0.002
tr|Q9FVK1|Q9FVK1_PICAB Transcription factor viviparous 1 OS=Pice... 45 0.003
tr|Q0JGQ2|Q0JGQ2_ORYSJ Os01g0911700 protein OS=Oryza sativa subs... 45 0.003
tr|B7EMQ0|B7EMQ0_ORYSJ cDNA clone:J033069I02, full insert sequen... 45 0.003
tr|A3A0T4|A3A0T4_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.003
tr|A2WY76|A2WY76_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.003
tr|Q1PHV4|Q1PHV4_AVEFA Viviparous 1 (Fragment) OS=Avena fatua PE... 45 0.003
tr|Q1PHV3|Q1PHV3_AVEFA Viviparous 1 (Fragment) OS=Avena fatua PE... 45 0.003
tr|Q1PHV2|Q1PHV2_AVEFA Viviparous 1 (Fragment) OS=Avena fatua PE... 45 0.003
tr|Q1PHV1|Q1PHV1_AVEFA Viviparous 1 (Fragment) OS=Avena fatua PE... 45 0.003
tr|Q1PHU9|Q1PHU9_AVEFA Viviparous 1 (Fragment) OS=Avena fatua PE... 45 0.003
tr|Q1PHU8|Q1PHU8_AVEFA Viviparous 1 (Fragment) OS=Avena fatua PE... 45 0.003
tr|Q1PHU7|Q1PHU7_AVEFA Viviparous 1 (Fragment) OS=Avena fatua PE... 45 0.003
tr|Q1PHU5|Q1PHU5_AVEFA Viviparous 1 (Fragment) OS=Avena fatua PE... 45 0.003
tr|Q1PHU4|Q1PHU4_AVEFA Viviparous 1 (Fragment) OS=Avena fatua PE... 45 0.003
tr|O49236|O49236_AVEFA VP 1 protein OS=Avena fatua GN=VP 1 PE=2 ... 45 0.003
tr|A7QKR9|A7QKR9_VITVI Chromosome undetermined scaffold_114, who... 44 0.008
>tr|B4XEV7|B4XEV7_PEA ABI3-like factor OS=Pisum sativum GN=ABI3 PE=2
SV=1
Length = 313
Score = 48.1 bits (113), Expect = 4e-04
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAKGPMQAAALCVVDDGSVKKRRSS 393
YLL GDFVK+ L+EGD+++L+ D+ GKF+IRG K Q A G +K +
Sbjct: 225 YLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQQ 284
Query: 392 VQ 387
Q
Sbjct: 285 QQ 286
>tr|B4XEV5|B4XEV5_PEA ABI3-like factor OS=Pisum sativum GN=ABI3 PE=2
SV=1
Length = 683
Score = 48.1 bits (113), Expect = 4e-04
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAKGPMQAAALCVVDDGSVKKRRSS 393
YLL GDFVK+ L+EGD+++L+ D+ GKF+IRG K Q A G +K +
Sbjct: 595 YLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQQ 654
Query: 392 VQ 387
Q
Sbjct: 655 QQ 656
>tr|B4XEV4|B4XEV4_PEA ABI3-like factor OS=Pisum sativum GN=ABI3 PE=2
SV=1
Length = 515
Score = 48.1 bits (113), Expect = 4e-04
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAKGPMQAAALCVVDDGSVKKRRSS 393
YLL GDFVK+ L+EGD+++L+ D+ GKF+IRG K Q A G +K +
Sbjct: 427 YLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQQ 486
Query: 392 VQ 387
Q
Sbjct: 487 QQ 488
>tr|B4XEV3|B4XEV3_PEA ABI3-like factor OS=Pisum sativum GN=ABI3 PE=2
SV=1
Length = 753
Score = 48.1 bits (113), Expect = 4e-04
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAKGPMQAAALCVVDDGSVKKRRSS 393
YLL GDFVK+ L+EGD+++L+ D+ GKF+IRG K Q A G +K +
Sbjct: 665 YLLENTGDFVKANGLQEGDFIVLYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQQ 724
Query: 392 VQ 387
Q
Sbjct: 725 QQ 726
>tr|Q9FNS6|Q9FNS6_9CONI VP1/ABI3-like protein OS=Callitropsis
nootkatensis GN=VP1/ABI3 PE=2 SV=1
Length = 794
Score = 47.8 bits (112), Expect = 5e-04
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAKGP---MQAAALCVVDDGS---- 414
YLL GDFV+S L+EGD+++L+ D TGK++IRG K P AAA +GS
Sbjct: 613 YLLENTGDFVRSNGLQEGDFIVLYSDTKTGKYMIRGVKVPRSDTSAAAATKCTNGSDGGD 672
Query: 413 ----VKKRRSSVQEEADCIRMSTTNSENSCEDSLLAELIEQSLED 291
+K +S + + + ++ +S S +++ S D
Sbjct: 673 AKQFIKMGKSYLASTSQSVAVTFADSMADASSSSVSDATVHSCPD 717
>tr|Q8LP13|Q8LP13_PEA ABA insensitive 3 OS=Pisum sativum GN=abi3
PE=2 SV=1
Length = 730
Score = 47.4 bits (111), Expect = 7e-04
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAKGPMQAAALCVVDDGSVKKRRSS 393
YLL GDFVK+ L+EGD+++++ D+ GKF+IRG K Q A G +K +
Sbjct: 642 YLLENTGDFVKANGLQEGDFIVMYSDVKCGKFMIRGVKVRQQGAKPEAKKTGKAQKNQQQ 701
Query: 392 VQ 387
Q
Sbjct: 702 QQ 703
>tr|B8YCS8|B8YCS8_WHEAT Viviparous 1 protein OS=Triticum aestivum
GN=Vp-1B PE=4 SV=1
Length = 687
Score = 47.0 bits (110), Expect = 0.001
Identities = 21/38 (55%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAK 459
YLL GDFV+S +L+EGD+++L+ D+ +GK+VIRG K
Sbjct: 593 YLLENTGDFVRSNELQEGDFIVLYSDVKSGKYVIRGVK 630
>tr|Q5K5C2|Q5K5C2_HORVU Viviparous-1 protein OS=Hordeum vulgare
GN=vip PE=4 SV=1
Length = 683
Score = 46.2 bits (108), Expect = 0.002
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAKGPMQAAALCVVDDGSVKKRRSS 393
YLL GDFV+S +L+EGD+++L+ D+ +GK++IRG K A L +GS +K +S
Sbjct: 591 YLLENTGDFVRSNELQEGDFIVLYSDVKSGKYLIRGVK-VRAAQELAKHKNGSPEKGGAS 649
Query: 392 VQEEAD 375
+ D
Sbjct: 650 EVKAED 655
>tr|Q9M3N7|Q9M3N7_WHEAT VIVIPAROUS1 protein OS=Triticum aestivum
GN=vp1A PE=4 SV=1
Length = 692
Score = 45.8 bits (107), Expect = 0.002
Identities = 20/38 (52%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAK 459
YLL GDFV+S +L+EGD+++L+ D+ +GK++IRG K
Sbjct: 598 YLLENTGDFVRSNELQEGDFIVLYSDVKSGKYLIRGVK 635
>tr|Q9M3N6|Q9M3N6_WHEAT VIVIPAROUS1 protein OS=Triticum aestivum
GN=vp1B PE=4 SV=1
Length = 688
Score = 45.8 bits (107), Expect = 0.002
Identities = 20/38 (52%), Positives = 31/38 (81%), Gaps = 1/38 (2%)
Frame = -2
Query: 569 YLLA-AGDFVKSYDLKEGDYMMLFCDIPTGKFVIRGAK 459
YLL GDFV+S +L+EGD+++L+ D+ +GK++IRG K
Sbjct: 594 YLLENTGDFVRSNELQEGDFIVLYSDVKSGKYLIRGVK 631
|