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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921422
Clone id YMU001_000149_F12
Library
Length 247
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTACGTCGGTCCATGCTAGGACCCCAAATCTGAACTCCATATAGTTAAAGAAGTGACTA
CAGTATCAAAGAGCCAAAGCTTCGTGCGGGGCTCTCGAAAGTCGAAACAAACATGTGAGC
ACATCCTCTCTAAAGAGCCCAAGGCAGCATAACCTCTAGTCAGCCTGACATCTATTGCCT
CTCTGAGGGAGAAAGATGGACCAAAAAAGAGCACTCCCAAATAGGTGCATGAATCCACAT
ACTCCAC
■■Homology search results ■■ -
sp_hit_id Q38841
Definition sp|Q38841|AGL12_ARATH Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana
Align length 77
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921422|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_F12.
         (247 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q38841|AGL12_ARATH Agamous-like MADS-box protein AGL12 OS=Ara...    32   0.98 

>sp|Q38841|AGL12_ARATH Agamous-like MADS-box protein AGL12
           OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2
          Length = 211

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
 Frame = +3

Query: 21  DPKSELHIVK-EVTTVSKSQSFVRGSRKSKQTCEHILSKEP---------KAA*PLVSLT 170
           DPK E++++K E+  + K  S++ G        E +L  E          ++A   V L 
Sbjct: 97  DPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQ 156

Query: 171 SIASLREKDGPKKSTPK 221
            I SLR K+G  K+T K
Sbjct: 157 EIQSLRNKEGVLKNTNK 173
tr_hit_id B3NF31
Definition tr|B3NF31|B3NF31_DROER GG14904 OS=Drosophila erecta
Align length 77
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921422|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_F12.
         (247 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3NF31|B3NF31_DROER GG14904 OS=Drosophila erecta GN=GG14904 P...    35   1.5  
tr|Q9VZU8|Q9VZU8_DROME CG1291 OS=Drosophila melanogaster GN=CG12...    33   7.2  
tr|Q95SA2|Q95SA2_DROME GM04690p OS=Drosophila melanogaster GN=CG...    33   7.2  
tr|B4PCV1|B4PCV1_DROYA GE20359 OS=Drosophila yakuba GN=GE20359 P...    33   7.2  
tr|B4HTK3|B4HTK3_DROSE GM14531 OS=Drosophila sechellia GN=GM1453...    33   7.2  
tr|B4QP22|B4QP22_DROSI GD13727 OS=Drosophila simulans GN=GD13727...    33   9.5  

>tr|B3NF31|B3NF31_DROER GG14904 OS=Drosophila erecta GN=GG14904 PE=4
           SV=1
          Length = 424

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = -3

Query: 242 VCGFMHLFGSALFWSIFLPQRGNRCQAD*RLCCLGLFREDVLTCLFRLSRAPHEALAL*Y 63
           +C ++ +  +A++ S F+PQR    + D  +C L      +  C+  L  APH    L Y
Sbjct: 75  ICAYLRMLYAAIYASFFMPQRE---KVDVVVCDL------ISVCIPVLRFAPHRPKVLFY 125

Query: 62  CSHFFNYMEFRFGVLAW 12
           C      +  R G+L W
Sbjct: 126 CHFPDQLLSSREGLLKW 142


>tr|Q9VZU8|Q9VZU8_DROME CG1291 OS=Drosophila melanogaster GN=CG1291
           PE=2 SV=1
          Length = 424

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -3

Query: 242 VCGFMHLFGSALFWSIFLPQRGNRCQAD*RLCCLGLFREDVLTCLFRLSRAPHEALAL*Y 63
           +C ++ +  +A++ S F+PQR    Q D  +C L      +  C+  L  APH    L Y
Sbjct: 75  ICAYLRMLYAAIYASFFMPQRE---QVDVVVCDL------ISVCIPVLRFAPHRPKVLFY 125

Query: 62  CSHFFNYMEFRFGVL 18
           C      +  R G+L
Sbjct: 126 CHFPDQLLSSREGLL 140


>tr|Q95SA2|Q95SA2_DROME GM04690p OS=Drosophila melanogaster
           GN=CG1291 PE=2 SV=1
          Length = 424

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -3

Query: 242 VCGFMHLFGSALFWSIFLPQRGNRCQAD*RLCCLGLFREDVLTCLFRLSRAPHEALAL*Y 63
           +C ++ +  +A++ S F+PQR    Q D  +C L      +  C+  L  APH    L Y
Sbjct: 75  ICAYLRMLYAAIYASFFMPQRE---QVDVVVCDL------ISVCIPVLRFAPHRPKVLFY 125

Query: 62  CSHFFNYMEFRFGVL 18
           C      +  R G+L
Sbjct: 126 CHFPDQLLSSREGLL 140


>tr|B4PCV1|B4PCV1_DROYA GE20359 OS=Drosophila yakuba GN=GE20359 PE=4
           SV=1
          Length = 424

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -3

Query: 242 VCGFMHLFGSALFWSIFLPQRGNRCQAD*RLCCLGLFREDVLTCLFRLSRAPHEALAL*Y 63
           +C ++ +  +A++ S F+PQR    Q D  +C L      +  C+  L  APH    L Y
Sbjct: 75  ICAYLRMLYAAIYASFFMPQRE---QVDVVVCDL------ISVCIPVLRFAPHRPKVLFY 125

Query: 62  CSHFFNYMEFRFGVL 18
           C      +  R G+L
Sbjct: 126 CHFPDQLLSSREGLL 140


>tr|B4HTK3|B4HTK3_DROSE GM14531 OS=Drosophila sechellia GN=GM14531
           PE=4 SV=1
          Length = 424

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -3

Query: 242 VCGFMHLFGSALFWSIFLPQRGNRCQAD*RLCCLGLFREDVLTCLFRLSRAPHEALAL*Y 63
           +C ++ +  +A++ S F+PQR    Q D  +C L      +  C+  L  APH    L Y
Sbjct: 75  ICAYLRMLYAAIYASFFMPQRE---QVDVVVCDL------ISVCIPVLRFAPHRPKVLFY 125

Query: 62  CSHFFNYMEFRFGVL 18
           C      +  R G+L
Sbjct: 126 CHFPDQLLSSREGLL 140


>tr|B4QP22|B4QP22_DROSI GD13727 OS=Drosophila simulans GN=GD13727
           PE=4 SV=1
          Length = 424

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -3

Query: 242 VCGFMHLFGSALFWSIFLPQRGNRCQAD*RLCCLGLFREDVLTCLFRLSRAPHEALAL*Y 63
           +C ++ +  +A++ S F+PQR    Q D  +C L      +  C+  L  APH    L Y
Sbjct: 75  ICAYLRMLYAAIYASFFMPQRE---QVDVVVCDL------ISVCIPVLLFAPHRPKVLFY 125

Query: 62  CSHFFNYMEFRFGVL 18
           C      +  R G+L
Sbjct: 126 CHFPDQLLSSREGLL 140