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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921431
Clone id YMU001_000149_H01
Library
Length 426
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000149_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCGTGCGAGAGAGAGTGCGAGAAGAGGAGCACAACGATATGGTGAACTCGCTCTA
CTGTAATGTGTAGAGCATAGTGAGTTCTTATTAGGTTTTTACAAAAGAATATGTGTACAT
ACCTGGCGGACCGCCCACTTACCTGGTGCGATCACATTGGGCTTGATACCCCAACATAGT
TGATGTGATTTTGGACCGAGATCACATCCAACGATTGAATTATGTGATGGCCATCCTCTA
GCAGATTGAGGGGCTCATTTAAGTATTCCCATCATGCCCTTGTTCAAAGTTGCTCGAGCT
CCTTAAGTACTGTACGGTCAGTCCAAATGTGGGTGTTGAATATTGGGCTTAGAATGTGAA
AATTGGCAAGGTTCTTGATACATGATAGTGCAGTGCAGACCAAACCTTGGGCTCGTATGC
CAACAA
■■Homology search results ■■ -
sp_hit_id P60091
Definition sp|P60091|PRMA_CHRVO Ribosomal protein L11 methyltransferase OS=Chromobacterium violaceum
Align length 35
Score (bit) 30.4
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921431|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_H01.
         (426 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P60091|PRMA_CHRVO Ribosomal protein L11 methyltransferase OS=...    30   3.1  
sp|Q9NTI7|CA183_HUMAN Uncharacterized protein C1orf183 OS=Homo s...    30   5.2  
sp|Q9HCC0|MCCB_HUMAN Methylcrotonoyl-CoA carboxylase beta chain,...    29   6.8  
sp|Q5XIT9|MCCB_RAT Methylcrotonoyl-CoA carboxylase beta chain, m...    29   8.8  
sp|Q3ULD5|MCCB_MOUSE Methylcrotonoyl-CoA carboxylase beta chain,...    29   8.8  
sp|Q1QV72|PRMA_CHRSD Ribosomal protein L11 methyltransferase OS=...    29   9.1  

>sp|P60091|PRMA_CHRVO Ribosomal protein L11 methyltransferase
           OS=Chromobacterium violaceum GN=prmA PE=3 SV=1
          Length = 298

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 121 TWRTAHLPGAITLGLIPQHS*CDFGPRSHPTIELC 225
           TW  A  P A+ L L P  +   FG  SHPT  LC
Sbjct: 122 TWHEAPAPNAVNLQLDPGLA---FGTGSHPTTRLC 153


>sp|Q9NTI7|CA183_HUMAN Uncharacterized protein C1orf183 OS=Homo
           sapiens GN=C1orf183 PE=2 SV=1
          Length = 297

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -2

Query: 245 SARGWPSHNSIVGCDLGP----KSHQLCWGIKPNVIAPGKW 135
           S+  +PSH S+ G DL P    + HQ C    P  + P  W
Sbjct: 101 SSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPERVEPDDW 141


>sp|Q9HCC0|MCCB_HUMAN Methylcrotonoyl-CoA carboxylase beta chain,
           mitochondrial OS=Homo sapiens GN=MCCC2 PE=1 SV=1
          Length = 563

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +2

Query: 131 PPTYLVRSHWA*YPNIVDVILDRDHIQRLNYVMAIL 238
           P  YLV S  A  P   DV  DRDH  R  Y  AI+
Sbjct: 166 PCIYLVDSGGAYLPRQADVFPDRDHFGRTFYNQAIM 201


>sp|Q5XIT9|MCCB_RAT Methylcrotonoyl-CoA carboxylase beta chain,
           mitochondrial OS=Rattus norvegicus GN=Mccc2 PE=2 SV=1
          Length = 563

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 131 PPTYLVRSHWA*YPNIVDVILDRDHIQRLNYVMAIL 238
           P  YLV S  A  P   D   DRDH  R+ Y  AI+
Sbjct: 166 PCIYLVDSGGANLPRQADTFPDRDHFGRIFYNQAIM 201


>sp|Q3ULD5|MCCB_MOUSE Methylcrotonoyl-CoA carboxylase beta chain,
           mitochondrial OS=Mus musculus GN=Mccc2 PE=2 SV=1
          Length = 563

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 131 PPTYLVRSHWA*YPNIVDVILDRDHIQRLNYVMAIL 238
           P  YLV S  A  P   D   DRDH  R+ Y  AI+
Sbjct: 166 PCIYLVDSGGANLPRQADTFPDRDHFGRIFYNQAIM 201


>sp|Q1QV72|PRMA_CHRSD Ribosomal protein L11 methyltransferase
           OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC
           BAA-138 / NCIMB 13768) GN=prmA PE=3 SV=1
          Length = 299

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 115 VHTWRTAHLPGAITLGLIPQHS*CDFGPRSHPTIELC 225
           V +W  A  PGA+ L L P  +   FG  +HPT  LC
Sbjct: 119 VPSWHEAPEPGAVNLLLDPGLA---FGTGTHPTTALC 152
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921431|Adiantum capillus-veneris mRNA, clone:
YMU001_000149_H01.
         (426 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******