BP921444
Clone id YMU001_000150_A03
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CACGAGACATAGGAAGGCGGAGTTTCTTCCCTAGAAGTGTTGGCCCTCAAGACGAGCGCC
CTTGAATTCTTTTGTATTGCAAAAGATGGCCCATACAAGTTGGTGTCACATGTTCTCAAG
GCCTTCTCGATCTTCACAAGAGATCAAGGCCTTTTTCATCTTCACAATTGCTCAAGTCTT
CTTCGTCTTCAAGAAAGCTAAAAGTCTTGGTCATCTTCACAAATGCTCATAGAGATTGCC
CTAAAATTGACGTTCCATTCTTCCTCCTTACATGCTCTCGAAGGAGTCTTTATATCGGTA
CCGGTCTAGCCTTTTCAGTGCCCCTGACCCTTGGCTTTTCATTTGTCCGACCTTTGGCTT
TTAATTTGTTTGACCTTTGTCTTTTCAATCGTCCGACCTTCGGCTATCCATTTGTCCAAC
CTTTGTTTGGCTTTTTAATTATCTAGTCCCTTGGCTTATAGAAAGAAGGCCATCCCACTT
TTAGGGCTTATTTGTGTTATGTGCCTCAC
■■Homology search results ■■ -
sp_hit_id Q6B8T0
Definition sp|Q6B8T0|CYF_GRATL Apocytochrome f OS=Gracilaria tenuistipitata var. liui
Align length 25
Score (bit) 30.4
E-value 5.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921444|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_A03.
(509 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6B8T0|CYF_GRATL Apocytochrome f OS=Gracilaria tenuistipitata... 30 5.0
sp|P03118|VE2_HPV1A Regulatory protein E2 OS=Human papillomaviru... 30 8.6

>sp|Q6B8T0|CYF_GRATL Apocytochrome f OS=Gracilaria tenuistipitata
var. liui GN=petA PE=3 SV=1
Length = 310

Score = 30.4 bits (67), Expect = 5.0
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +2

Query: 122 PSRSSQEIKAFFIFTIAQVFFVFKK 196
PSR I FF TIAQ+FFV KK
Sbjct: 273 PSRIKGMIVFFFTVTIAQIFFVLKK 297


>sp|P03118|VE2_HPV1A Regulatory protein E2 OS=Human papillomavirus
type 1a GN=E2 PE=3 SV=2
Length = 401

Score = 29.6 bits (65), Expect = 8.6
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +1

Query: 97 KLVSHVLKAFSIFTRDQGLFHLHNCSSLLRL-QES*KSWSSSQMLIEIALKLTFHSSSL 270
KL+ +K +++ ++Q LFH + ++R+ ++ S +SSQ + A+++ H SL
Sbjct: 24 KLIEDQIKQWNLIRQEQVLFHFARKNGVMRIGLQAVPSLASSQEKAKTAIEMVLHLESL 82


tr_hit_id A9WJY5
Definition tr|A9WJY5|A9WJY5_CHLAA Superfamily I DNA and RNA helicase and helicase subunits-like protein OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Align length 103
Score (bit) 34.3
E-value 3.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921444|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_A03.
(509 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9WJY5|A9WJY5_CHLAA Superfamily I DNA and RNA helicase and he... 34 3.6
tr|B2QL32|B2QL32_9CHLR Superfamily I DNA and RNA helicase and he... 34 3.6
tr|Q9I6H0|Q9I6H0_PSEAE Probable acetylpolyamine aminohydrolase O... 34 4.7
tr|Q02U95|Q02U95_PSEAB Acetylpolyamine aminohydrolase OS=Pseudom... 34 4.7
tr|B7V2N3|B7V2N3_PSEAE Probable acetylpolyamine aminohydrolase O... 34 4.7
tr|A3LHC9|A3LHC9_PSEAE Putative uncharacterized protein OS=Pseud... 34 4.7
tr|A3L0A6|A3L0A6_PSEAE Putative uncharacterized protein OS=Pseud... 34 4.7

>tr|A9WJY5|A9WJY5_CHLAA Superfamily I DNA and RNA helicase and
helicase subunits-like protein OS=Chloroflexus
aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
GN=Caur_1207 PE=4 SV=1
Length = 1410

Score = 34.3 bits (77), Expect = 3.6
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +2

Query: 41 WPSRRAPLNSFVLQKMAHTSWCHMFSRPSRSSQEIKAFFIFTIAQVF-FVFKKAKSLGHL 217
W +RR N+ + + A+ +W + P R ++ + Q+ F+ K+ ++ HL
Sbjct: 587 WYTRRIRFNNQIPLEYAYAAWQALPPPPDRGEDDLVDYRDVKYEQLLAFINKRLEAFAHL 646

Query: 218 HKCS*RLP*N*RSILPPYMLSKESLYRYRS-SLFSAPDPWLFI 343
+ RLP N R+ PP+ L+ + Y RS SL A +L I
Sbjct: 647 ---AARLPANHRTTKPPFDLTCITRYTRRSPSLADALAEFLLI 686


>tr|B2QL32|B2QL32_9CHLR Superfamily I DNA and RNA helicase and
helicase subunits-like protein OS=Chloroflexus sp.
Y-400-fl GN=Chy400DRAFT_1714 PE=4 SV=1
Length = 1410

Score = 34.3 bits (77), Expect = 3.6
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +2

Query: 41 WPSRRAPLNSFVLQKMAHTSWCHMFSRPSRSSQEIKAFFIFTIAQVF-FVFKKAKSLGHL 217
W +RR N+ + + A+ +W + P R ++ + Q+ F+ K+ ++ HL
Sbjct: 587 WYTRRIRFNNQIPLEYAYAAWQALPPPPDRGEDDLVDYRDVKYEQLLAFINKRLEAFAHL 646

Query: 218 HKCS*RLP*N*RSILPPYMLSKESLYRYRS-SLFSAPDPWLFI 343
+ RLP N R+ PP+ L+ + Y RS SL A +L I
Sbjct: 647 ---AARLPANHRTTKPPFDLTCITRYTRRSPSLADALAEFLLI 686


>tr|Q9I6H0|Q9I6H0_PSEAE Probable acetylpolyamine aminohydrolase
OS=Pseudomonas aeruginosa GN=PA0321 PE=4 SV=1
Length = 344

Score = 33.9 bits (76), Expect = 4.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3

Query: 210 VIFTNAHRDCPKIDVPFFLLTCSRRSLYIGTGLAFSVPLTLG 335
V+FT+ H D P+ + P+FL + +GTG F+ PL G
Sbjct: 212 VLFTSIHGD-PRFEYPYFLGYADEKGNGVGTGYNFNYPLAAG 252


>tr|Q02U95|Q02U95_PSEAB Acetylpolyamine aminohydrolase
OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=PA14_04190 PE=4 SV=1
Length = 344

Score = 33.9 bits (76), Expect = 4.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3

Query: 210 VIFTNAHRDCPKIDVPFFLLTCSRRSLYIGTGLAFSVPLTLG 335
V+FT+ H D P+ + P+FL + +GTG F+ PL G
Sbjct: 212 VLFTSIHGD-PRFEYPYFLGYADEKGNGVGTGYNFNYPLAAG 252


>tr|B7V2N3|B7V2N3_PSEAE Probable acetylpolyamine aminohydrolase
OS=Pseudomonas aeruginosa LESB58 GN=PLES_03171 PE=4 SV=1
Length = 344

Score = 33.9 bits (76), Expect = 4.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3

Query: 210 VIFTNAHRDCPKIDVPFFLLTCSRRSLYIGTGLAFSVPLTLG 335
V+FT+ H D P+ + P+FL + +GTG F+ PL G
Sbjct: 212 VLFTSIHGD-PRFEYPYFLGYADEKGNGVGTGYNFNYPLAAG 252


>tr|A3LHC9|A3LHC9_PSEAE Putative uncharacterized protein
OS=Pseudomonas aeruginosa 2192 GN=PA2G_04233 PE=4 SV=1
Length = 344

Score = 33.9 bits (76), Expect = 4.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3

Query: 210 VIFTNAHRDCPKIDVPFFLLTCSRRSLYIGTGLAFSVPLTLG 335
V+FT+ H D P+ + P+FL + +GTG F+ PL G
Sbjct: 212 VLFTSIHGD-PRFEYPYFLGYADEKGNGVGTGYNFNYPLAAG 252


>tr|A3L0A6|A3L0A6_PSEAE Putative uncharacterized protein
OS=Pseudomonas aeruginosa C3719 GN=PACG_03520 PE=4 SV=1
Length = 344

Score = 33.9 bits (76), Expect = 4.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3

Query: 210 VIFTNAHRDCPKIDVPFFLLTCSRRSLYIGTGLAFSVPLTLG 335
V+FT+ H D P+ + P+FL + +GTG F+ PL G
Sbjct: 212 VLFTSIHGD-PRFEYPYFLGYADEKGNGVGTGYNFNYPLAAG 252