BP921457
Clone id YMU001_000150_B07
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GCTGATGCACAAAATGTACTTTTACGGACGGTATGTCTTGCCTTATAGGCATGTGCAAGA
CTTGTACAGTATTATCTGCCACGAGAGGTCAATTATTCTTTTCTTGGAGAAGGGTTGAAG
GAGATTTGTGATTGGGCTTGGCGAACGGATGCTGTGTTCTAATGATATACACAGAAAATC
ATGGTGGCCACCAAAGAAAGCAACATCTCCCAGAACATTGAATGGAATGCTGTCATAAAA
AAGCATTTAATTCCTTTGAAGGTTTCACCGTTTCTCCCACAGCATACTTTTTCCCATTAT
TGTGAAGTAACGCCTGTTATTTTCAAGGCAGGTATGTTTCCTTGAGTTGCCGACCGGATT
GGTCATGAGGGTACTATTGTCGTAGCTCGTTGGCTTGACGAAGTGAATGTGTGGAGTAAT
ATAACTCTTAATGGAGAGTGCAGTTGATGCAGGAGACCACGCATCATCTGCTGATTGATA
TGTGATCCAAGAACTTGGTGTACCATCATAAATATCTTTGGTATTGTCTCTGGCTAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6AIL0
Definition sp|Q6AIL0|CMOB_DESPS tRNA (mo5U34)-methyltransferase OS=Desulfotalea psychrophila
Align length 36
Score (bit) 30.4
E-value 5.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921457|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_B07.
(535 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6AIL0|CMOB_DESPS tRNA (mo5U34)-methyltransferase OS=Desulfot... 30 5.7
sp|Q5SCY9|CHLL_HUPLU Light-independent protochlorophyllide reduc... 30 5.7
sp|Q6XJV6|MO2R2_MOUSE Cell surface glycoprotein CD200 receptor 2... 30 7.4
sp|Q9QZI8|SERC1_MOUSE Serine incorporator 1 OS=Mus musculus GN=S... 30 9.5
sp|Q3MHV9|SERC1_BOVIN Serine incorporator 1 OS=Bos taurus GN=SER... 30 9.5
sp|Q8U2E6|SYL_PYRFU Leucyl-tRNA synthetase OS=Pyrococcus furiosu... 30 9.7
sp|P36439|CHLL_POLAC Light-independent protochlorophyllide reduc... 30 9.7
sp|O55017|CAC1B_MOUSE Voltage-dependent N-type calcium channel s... 30 9.7

>sp|Q6AIL0|CMOB_DESPS tRNA (mo5U34)-methyltransferase
OS=Desulfotalea psychrophila GN=cmoB PE=3 SV=1
Length = 320

Score = 30.4 bits (67), Expect = 5.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2

Query: 495 SSWITYQSADDAWSPASTALSIKSYITPHIHFVKPT 388
+ W+ ++S D P + L+++ Y PH FVK T
Sbjct: 282 TEWMEFESYKDFLDPENPELTLEGYPAPHRFFVKAT 317


>sp|Q5SCY9|CHLL_HUPLU Light-independent protochlorophyllide
reductase iron-sulfur ATP-binding protein OS=Huperzia
lucidula GN=chlL PE=3 SV=1
Length = 292

Score = 30.4 bits (67), Expect = 5.7
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = -1

Query: 286 YAVGETVKPSKELNAF 239
Y VGETVK SKELNAF
Sbjct: 98 YVVGETVKLSKELNAF 113


>sp|Q6XJV6|MO2R2_MOUSE Cell surface glycoprotein CD200 receptor 2
OS=Mus musculus GN=Cd200r1l PE=2 SV=1
Length = 249

Score = 30.0 bits (66), Expect = 7.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1

Query: 184 VATKESN---ISQNIEWNAVIKKHLIPLKVSPFLPQHTFSHYCEVT 312
V TKE+N + +NI W A H+ L++S QH ++ CE+T
Sbjct: 67 VETKETNETCLGRNITW-ASTPDHIPDLQISAVALQHEGNYLCEIT 111


>sp|Q9QZI8|SERC1_MOUSE Serine incorporator 1 OS=Mus musculus
GN=Serinc1 PE=2 SV=1
Length = 453

Score = 29.6 bits (65), Expect = 9.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3

Query: 248 KCFFMTAFHSMFWEMLLSLVATMIFCVYH*NTASVRQAQSQISFN 114
+C++ + LLSLVA ++F VY+ + AS + ++ IS N
Sbjct: 192 RCWYAALLSATALNYLLSLVAVVLFFVYYTHPASCAENKAFISVN 236


>sp|Q3MHV9|SERC1_BOVIN Serine incorporator 1 OS=Bos taurus
GN=SERINC1 PE=2 SV=1
Length = 453

Score = 29.6 bits (65), Expect = 9.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3

Query: 248 KCFFMTAFHSMFWEMLLSLVATMIFCVYH*NTASVRQAQSQISFN 114
+C++ + LLSLVA ++F VY+ + AS + ++ IS N
Sbjct: 192 RCWYAALLSATALNYLLSLVAVVLFFVYYTHPASCAENKAFISVN 236


>sp|Q8U2E6|SYL_PYRFU Leucyl-tRNA synthetase OS=Pyrococcus furiosus
GN=leuS PE=3 SV=1
Length = 967

Score = 29.6 bits (65), Expect = 9.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1

Query: 352 DRIGHEGTIVVARWLDEVNVWSNITLNGE 438
+++G EG + +A+W D V W N T+ E
Sbjct: 807 EKLGGEGFVSLAKWPDPVEEWWNETIEAE 835


>sp|P36439|CHLL_POLAC Light-independent protochlorophyllide
reductase iron-sulfur ATP-binding protein (Fragment)
OS=Polystichum acrostichoides GN=chlL PE=3 SV=1
Length = 160

Score = 29.6 bits (65), Expect = 9.7
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = -1

Query: 286 YAVGETVKPSKELNAF 239
Y VGETVKP KE NAF
Sbjct: 103 YVVGETVKPLKESNAF 118


>sp|O55017|CAC1B_MOUSE Voltage-dependent N-type calcium channel
subunit alpha-1B OS=Mus musculus GN=Cacna1b PE=1 SV=1
Length = 2327

Score = 29.6 bits (65), Expect = 9.7
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -1

Query: 136 PNHKSPSTLLQEKNN*PLVADNTVQVLHMPIRQDIPSVKVH 14
P H PST LQ+ + P ADN V M + PS VH
Sbjct: 1028 PLHMLPSTCLQKVDEQPEDADNQRNVTRMGSQPSDPSTTVH 1068


tr_hit_id Q0RTF2
Definition tr|Q0RTF2|Q0RTF2_FRAAA Putative ATP/GTP binding protein (Partial match) OS=Frankia alni (strain ACN14a)
Align length 39
Score (bit) 33.1
E-value 9.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921457|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_B07.
(535 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0RTF2|Q0RTF2_FRAAA Putative ATP/GTP binding protein (Partial... 33 9.2

>tr|Q0RTF2|Q0RTF2_FRAAA Putative ATP/GTP binding protein (Partial
match) OS=Frankia alni (strain ACN14a) GN=FRAAL0472 PE=4
SV=1
Length = 1212

Score = 33.1 bits (74), Expect = 9.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3

Query: 455 LLHQLHSPLRVILLHTFTSSSQRATTIVPS*PIRSATQG 339
L H +R + +H T+ + R TTI P+ P+R+A G
Sbjct: 407 LTHTSTDDVRAVRVHALTARAARETTIAPAAPVRAAADG 445