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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921460
Clone id YMU001_000150_B10
Library
Length 327
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAATTCAAGAAACTCTGTATTTCTTCATGGCTCACACAAGAATACAACGAGACGTGATCA
CTGATTGGAACCATGTTCGGATGGACAAAACAGAATCTTTGCATTCTTACTGTGAAAGAT
TTTGGGAAATTATTTTACCTGTTTCATCCTTAAAGAAGATCAGCTTTAAGGAGTAGATTG
AACGATTTTGTGGTGGGCTTTCCAAAGAAATTTGAGACTACTGTCTCCCAAGGAAGTCCA
AGTCTATACAACAATTGATGGGACACGTGAAGCTGGGATTTGTTATACATTCGGGTAAAT
TGACTTACCCATTAGATGAACCTTCAA
■■Homology search results ■■ -
sp_hit_id O95342
Definition sp|O95342|ABCBB_HUMAN Bile salt export pump OS=Homo sapiens
Align length 27
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921460|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_B10.
         (327 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95342|ABCBB_HUMAN Bile salt export pump OS=Homo sapiens GN=A...    30   5.0  
sp|Q9N0V3|ABCBB_RABIT Bile salt export pump OS=Oryctolagus cunic...    29   8.4  
sp|P52291|PPA1_PICPA Acid phosphatase PHO1 OS=Pichia pastoris GN...    29   8.5  
sp|Q4KHY5|ALGL_PSEF5 Alginate lyase OS=Pseudomonas fluorescens (...    29   8.5  

>sp|O95342|ABCBB_HUMAN Bile salt export pump OS=Homo sapiens GN=ABCB11
            PE=1 SV=1
          Length = 1321

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/27 (51%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
 Frame = +1

Query: 160  SALRSRLNDFVVGFPKKFETTV-SQGS 237
            +A +++L+DFV+  P+K+ET V SQGS
Sbjct: 1191 AAKQAQLHDFVMSLPEKYETNVGSQGS 1217


>sp|Q9N0V3|ABCBB_RABIT Bile salt export pump OS=Oryctolagus cuniculus
            GN=ABCB11 PE=2 SV=1
          Length = 1321

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/27 (48%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
 Frame = +1

Query: 160  SALRSRLNDFVVGFPKKFETTV-SQGS 237
            +A +++++DFV+  P+K+ET V SQGS
Sbjct: 1191 AAKKAQVHDFVMSLPEKYETNVGSQGS 1217


>sp|P52291|PPA1_PICPA Acid phosphatase PHO1 OS=Pichia pastoris
           GN=PHO1 PE=2 SV=1
          Length = 468

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 298 LPECITNPSFTCPINCCID-LDFLGRQ*SQISLESPPQNRSIYSLKLIFFKDE 143
           L +C + P F+CP+N  +  L+ L            P+N S Y L+L FF D+
Sbjct: 415 LSDCSSGPGFSCPLNDYVSRLEALNEDSDFAENCGVPKNAS-YPLELSFFWDD 466


>sp|Q4KHY5|ALGL_PSEF5 Alginate lyase OS=Pseudomonas fluorescens
           (strain Pf-5 / ATCC BAA-477) GN=algL PE=3 SV=1
          Length = 371

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/77 (22%), Positives = 42/77 (54%)
 Frame = +3

Query: 36  TRIQRDVITDWNHVRMDKTESLHSYCERFWEIILPVSSLKKISFKE*IERFCGGLSKEI* 215
           +++   V++DW+++ +DKT + HSY   +  +   V++ ++  F   ++ +  G ++   
Sbjct: 183 SKMADQVVSDWDNLPLDKTNN-HSYWAAWSVMATAVATNRRDLFDWAVKEYKVGANQVDA 241

Query: 216 DYCLPRKSKSIQQLMGH 266
           D  LP + K  Q+ + +
Sbjct: 242 DGFLPNELKRQQRALAY 258
tr_hit_id Q0RZV0
Definition tr|Q0RZV0|Q0RZV0_RHOSR Medium-chain-fatty-acid--CoA ligase OS=Rhodococcus sp. (strain RHA1)
Align length 43
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921460|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_B10.
         (327 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0RZV0|Q0RZV0_RHOSR Medium-chain-fatty-acid--CoA ligase OS=Rh...    34   4.1  
tr|Q6REN4|Q6REN4_9NOCA Putative medium-chain-fatty-acid-CoA liga...    34   4.1  

>tr|Q0RZV0|Q0RZV0_RHOSR Medium-chain-fatty-acid--CoA ligase
           OS=Rhodococcus sp. (strain RHA1) GN=fadD PE=3 SV=1
          Length = 542

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 182 TILWWAFQRNLRLLSPKEVQVYTTIDGTREAGICYTFG*IDLP 310
           T+ WW+F R L    P  ++ +   D T  A IC+T G   LP
Sbjct: 170 TVTWWSFDRLLHDAEP--IEEFPEFDETTAASICFTSGTTGLP 210


>tr|Q6REN4|Q6REN4_9NOCA Putative medium-chain-fatty-acid-CoA ligase
           OS=Rhodococcus sp. DK17 GN=PDK3.013 PE=3 SV=1
          Length = 526

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 182 TILWWAFQRNLRLLSPKEVQVYTTIDGTREAGICYTFG*IDLP 310
           T+ WW+F R L    P  ++ +   D T  A IC+T G   LP
Sbjct: 154 TVTWWSFDRLLHDAEP--IEEFPEFDETTAASICFTSGTTGLP 194