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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921466
Clone id YMU001_000150_C06
Library
Length 587
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTATGTTTTCATGATTCACGCGATCACCTGCTTCTATAGAAGTTCATTGGTATAAGGGGA
CATATGTTCTTCAGTAAAGACAATGGAGAGATGCAGATGCATTGTATAAACACCCAGGTA
TTTTGTCCCTTGACAGCTGTGTCTGAAACAAAGAAGCATTGTACATAATCTTGCCTGCTA
GCAAGTTTTGGATATTAGCCATGGTCATGTGCATTTTTAATGCCTTATATATGGCCCTTT
CGAAATTTTGCGTATACATCAAATGGCTTGGTCAGAAACCTGTTGCATATAGAGTCCACG
ATCACTGCAGCTCTTCGTCTGGCAATTTTCCTATGCGTTTCCCTTTTTTTGGGTGGCCTG
TTGTCCTAAGTTCACATTCGGATGCAAAATTGCTAGAGTTCTATTCACAGTGCTTTAGAT
GACGTTTGGTGAGCTTTTACCCACCTTTCCATGGCATTTTAATGCCCATCTGTCATTTTT
GGCTAGGAACAGAGGGCAGGTTGATTCATCGTATCAAGTGAAACTTGATGTATCAGTGGT
TGGATTTGTATCACAGGTCTTATTGTCTTCATTGATGCTACCATGCA
■■Homology search results ■■ -
sp_hit_id Q04610
Definition sp|Q04610|POLN_HEVMY Non-structural polyprotein pORF1 OS=Hepatitis E virus genotype 1 (isolate Human/Myanmar/HEVNE8L)
Align length 19
Score (bit) 31.6
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921466|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_C06.
         (572 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04610|POLN_HEVMY Non-structural polyprotein pORF1 OS=Hepatit...    32   2.9  
sp|P29324|POLN_HEVBU Non-structural polyprotein pORF1 OS=Hepatit...    32   2.9  
sp|Q08218|YO047_YEAST Uncharacterized protein YOL047C OS=Sacchar...    31   3.8  
sp|P33424|POLN_HEVPA Non-structural polyprotein pORF1 OS=Hepatit...    30   6.5  
sp|Q9WC28|POLN_HEVHY Non-structural polyprotein pORF1 OS=Hepatit...    30   6.5  

>sp|Q04610|POLN_HEVMY Non-structural polyprotein pORF1 OS=Hepatitis
           E virus genotype 1 (isolate Human/Myanmar/HEVNE8L)
           GN=ORF1 PE=1 SV=1
          Length = 1693

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 207 ALYMALSKFCVYIKWLGQK 263
           A+  ALSKFC ++KWLGQ+
Sbjct: 462 AIRKALSKFCCFMKWLGQE 480


>sp|P29324|POLN_HEVBU Non-structural polyprotein pORF1 OS=Hepatitis
           E virus genotype 1 (isolate Human/Burma) GN=ORF1 PE=1
           SV=1
          Length = 1693

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +3

Query: 207 ALYMALSKFCVYIKWLGQK 263
           A+  ALSKFC ++KWLGQ+
Sbjct: 462 AIRKALSKFCCFMKWLGQE 480


>sp|Q08218|YO047_YEAST Uncharacterized protein YOL047C
           OS=Saccharomyces cerevisiae GN=YOL047C PE=1 SV=2
          Length = 356

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
 Frame = +3

Query: 27  VHWYKGTYVLQ*RQWRDADA-----LYKHPGILSLDSCV*NKEALYIILPASKFWILAMV 191
           V WYK   +++   W+D ++      Y + GI      V N + L++      +++L ++
Sbjct: 52  VRWYKNAMLVKDNFWKDLESSHQIIWYPYKGI---SESVGNSDYLHLFFLIFGYYLLNLL 108

Query: 192 MCIFNALYMALSKF-CVYIKWLG--QKPVAY 275
           + +     +A S   C+Y+ +LG    P+AY
Sbjct: 109 LIVAFTSILAWSLLVCIYLPFLGLFALPLAY 139


>sp|P33424|POLN_HEVPA Non-structural polyprotein pORF1 OS=Hepatitis
           E virus genotype 1 (isolate Human/Pakistan/Sar-55)
           GN=ORF1 PE=3 SV=2
          Length = 1693

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 207 ALYMALSKFCVYIKWLGQK 263
           A+  A+SKFC ++KWLGQ+
Sbjct: 462 AIRKAVSKFCCFMKWLGQE 480


>sp|Q9WC28|POLN_HEVHY Non-structural polyprotein pORF1 OS=Hepatitis
           E virus genotype 1 (isolate Human/India/Hyderabad)
           GN=ORF1 PE=1 SV=1
          Length = 1693

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = +3

Query: 219 ALSKFCVYIKWLGQK 263
           ALSKFC ++KWLGQ+
Sbjct: 466 ALSKFCCFMKWLGQE 480
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921466|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_C06.
         (572 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******