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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921467
Clone id YMU001_000150_C07
Library
Length 563
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_C07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTCCTGATAGTCTTGAACGTCAAAGGGCAACTGCTGAACAATTGTGTTTCACGTTAAGA
ATGACCCATCTGCTAACGCAACATCGTACGGTTGAGTACTCTGGACAATAGGTAATTGTA
GTCGATGCACAATGTTGGTGCTCACAAAATTATTGGAACATTCGCTATCAACCAAAATGT
TAATTGGTTTGCCATGAATGAAGCCAAGGAGACTTAAGACTTGATAGGCACGTTGCTCGG
TATGGGCATAGTATTCTGGGCATTTTTATTTAAAAATTGAAGCCACTTTGGAAACGCGAA
TTGTGTTAACAACACGTTTGCCTCTGTCTTGCTGTGAAGTAGAATCGGCAGATTGGTCAG
AATTAAAAGGTAACATTGTAGGTGTCTCTGCATTAGCATTTCGTCTCAGGTTAGACGGTT
GAGGCCGCTTATCACATTGGAACCAACGATGAGGTCCACCGCAAAGGGTACATAATCCAT
CTTTGGAGGGTTGTGAACTGGACTGTTGTGGAGGAGCAGCAGAAGTTGACGCTTGATTGC
CATATGAACGTTTGTCTGGGTAA
■■Homology search results ■■ -
sp_hit_id P34107
Definition sp|P34107|SODF_ENTHI Superoxide dismutase [Fe] OS=Entamoeba histolytica
Align length 33
Score (bit) 36.2
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921467|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_C07.
         (563 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34107|SODF_ENTHI Superoxide dismutase [Fe] OS=Entamoeba hist...    36   0.11 

>sp|P34107|SODF_ENTHI Superoxide dismutase [Fe] OS=Entamoeba
           histolytica GN=SODB PE=2 SV=1
          Length = 190

 Score = 36.2 bits (82), Expect = 0.11
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +1

Query: 421 EAAYHIGTNDEVHRKGYIIHLWRVVNWTVVEEQ 519
           E AY+I T +  +R  Y+ H W VVNW  VEEQ
Sbjct: 159 EHAYYIDTRN--NRAAYLEHWWNVVNWKFVEEQ 189
tr_hit_id Q0D7Z1
Definition tr|Q0D7Z1|Q0D7Z1_ORYSJ Os07g0195900 protein OS=Oryza sativa subsp. japonica
Align length 70
Score (bit) 48.5
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921467|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_C07.
         (563 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0D7Z1|Q0D7Z1_ORYSJ Os07g0195900 protein OS=Oryza sativa subs...    49   2e-04
tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse tran...    47   0.001
tr|B8B5X3|B8B5X3_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.004
tr|Q8S744|Q8S744_ORYSA Putative retroelement OS=Oryza sativa GN=...    42   0.018
tr|Q8LNL7|Q8LNL7_ORYSJ Putative retroelement (Fragment) OS=Oryza...    42   0.018
tr|Q2R4A3|Q2R4A3_ORYSJ Retrotransposon protein, putative, unclas...    41   0.039
tr|Q2QUM2|Q2QUM2_ORYSJ Retrotransposon protein, putative, unclas...    41   0.039
tr|A3CB99|A3CB99_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.039
tr|A5C9A7|A5C9A7_VITVI Putative uncharacterized protein OS=Vitis...    41   0.051
tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein OS=Glycine max PE=4 SV=1            40   0.088
tr|Q2QSH9|Q2QSH9_ORYSJ Retrotransposon protein, putative, unclas...    40   0.11 
tr|Q2QQD0|Q2QQD0_ORYSJ Retrotransposon protein, putative, unclas...    39   0.15 
tr|A5C356|A5C356_VITVI Putative uncharacterized protein OS=Vitis...    39   0.25 
tr|B8MA75|B8MA75_9EURO Retrovirus polyprotein, putative OS=Talar...    39   0.25 
tr|Q2R3G0|Q2R3G0_ORYSJ Retrotransposon protein, putative, unclas...    38   0.33 
tr|A5CAG1|A5CAG1_VITVI Putative uncharacterized protein OS=Vitis...    38   0.33 
tr|A5BMN5|A5BMN5_VITVI Putative uncharacterized protein OS=Vitis...    38   0.33 
tr|Q53K49|Q53K49_ORYSJ Retrotransposon protein, putative, Ty3-gy...    37   0.57 
tr|A5C633|A5C633_VITVI Putative uncharacterized protein OS=Vitis...    37   0.57 
tr|A5AZ10|A5AZ10_VITVI Putative uncharacterized protein OS=Vitis...    37   0.74 
tr|A5AQ58|A5AQ58_VITVI Putative uncharacterized protein OS=Vitis...    37   0.74 
tr|A4RGL9|A4RGL9_MAGGR Putative uncharacterized protein OS=Magna...    37   0.74 
tr|A4QY44|A4QY44_MAGGR Putative uncharacterized protein OS=Magna...    37   0.74 
tr|Q8H7X6|Q8H7X6_ORYSJ Putative retroelement (Retrotransposon pr...    37   0.97 
tr|Q0INM7|Q0INM7_ORYSJ Os12g0428300 protein OS=Oryza sativa subs...    37   0.97 
tr|B5U9W4|B5U9W4_LOTJA Putative uncharacterized protein OS=Lotus...    37   0.97 
tr|B5U9W1|B5U9W1_LOTJA Putative uncharacterized protein OS=Lotus...    37   0.97 
tr|B5U9W0|B5U9W0_LOTJA Putative uncharacterized protein OS=Lotus...    37   0.97 
tr|B5U9V8|B5U9V8_LOTJA Putative uncharacterized protein OS=Lotus...    37   0.97 
tr|A7PYQ3|A7PYQ3_VITVI Chromosome chr12 scaffold_38, whole genom...    37   0.97 

>tr|Q0D7Z1|Q0D7Z1_ORYSJ Os07g0195900 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0195900 PE=4 SV=1
          Length = 1219

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 27/70 (38%), Positives = 42/70 (60%)
 Frame = -2

Query: 217 LSLLGFIHGKPINILVDSECSNNFVSTNIVHRLQLPIVQSTQPYDVALADGSFLT*NTIV 38
           L L   +  + + ILVDS  S++F++ ++ HRLQLP+V S  P  V +ADG+ LT +  V
Sbjct: 296 LQLRALVGNQVVLILVDSGSSHSFINADLCHRLQLPLV-SCDPATVKIADGTLLTCSAQV 354

Query: 37  QQLPFDVQDY 8
               + +Q Y
Sbjct: 355 PAFTWWIQGY 364


>tr|A2Q2C7|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse
           transcriptase); Chromo; Zinc finger, CCHC-type;
           Peptidase aspartic, active site; Polynucleotidyl
           transferase, Ribonuclease H fold OS=Medicago truncatula
           GN=MtrDRAFT_AC150244g37v2 PE=4 SV=1
          Length = 1297

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 2/158 (1%)
 Frame = -2

Query: 478 GLCTLCGGP-HRWFQC-DKRPQPSNLRRNANAETPTMLPFNXXXXXXXXXXXDRGKRVVN 305
           GLC  CGGP H   QC DK+ +   L  +   E                     GK +  
Sbjct: 111 GLCFKCGGPFHPMHQCPDKQLRVLVLEEDEEGEP-------------------EGKLLA- 150

Query: 304 TIRVSKVASIFK*KCPEYYAHTEQRAYQVLSLLGFIHGKPINILVDSECSNNFVSTNIVH 125
            + V          C   + H      Q + L+G I   P+ +LVDS  ++NF+S  +VH
Sbjct: 151 -VEVDDEEEGDGEMCMMEFFHLGHSRPQSIKLMGVIKEVPVVVLVDSGATHNFISQQLVH 209

Query: 124 RLQLPIVQSTQPYDVALADGSFLT*NTIVQQLPFDVQD 11
           ++   +V  T    + L DGS+       + L  DV D
Sbjct: 210 KMNWAVV-DTPCMSIKLGDGSYSKTKGTCEGLEVDVGD 246


>tr|B8B5X3|B8B5X3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25921 PE=4 SV=1
          Length = 426

 Score = 44.7 bits (104), Expect = 0.004
 Identities = 25/72 (34%), Positives = 41/72 (56%)
 Frame = -2

Query: 223 QVLSLLGFIHGKPINILVDSECSNNFVSTNIVHRLQLPIVQSTQPYDVALADGSFLT*NT 44
           + + L G +  + I +LVDS   +NF+S  +V +LQLP  Q++ P  V +ADG  +  N 
Sbjct: 229 RTIRLQGLLQNQEILVLVDSGSFSNFLSEQLVSKLQLP-TQTSAPSQVTIADGGKILCNQ 287

Query: 43  IVQQLPFDVQDY 8
           +V  L +  Q +
Sbjct: 288 VVANLEWWCQGH 299


>tr|Q8S744|Q8S744_ORYSA Putative retroelement OS=Oryza sativa
           GN=OSJNBb0081F12.24 PE=4 SV=1
          Length = 954

 Score = 42.4 bits (98), Expect = 0.018
 Identities = 25/70 (35%), Positives = 40/70 (57%)
 Frame = -2

Query: 217 LSLLGFIHGKPINILVDSECSNNFVSTNIVHRLQLPIVQSTQPYDVALADGSFLT*NTIV 38
           + +LG++ GK + ILVDS  + +F+S+ I   LQ  +V    P  V +A+GS LT  T V
Sbjct: 412 MRMLGYVQGKEVLILVDSGSTASFISSKIAQTLQ-GVVTLEPPVQVKVANGSILTCLTSV 470

Query: 37  QQLPFDVQDY 8
            +  +  Q +
Sbjct: 471 PRCEWMTQGW 480


>tr|Q8LNL7|Q8LNL7_ORYSJ Putative retroelement (Fragment) OS=Oryza
           sativa subsp. japonica GN=OSJNBa0071I20.1 PE=4 SV=1
          Length = 1065

 Score = 42.4 bits (98), Expect = 0.018
 Identities = 25/70 (35%), Positives = 40/70 (57%)
 Frame = -2

Query: 217 LSLLGFIHGKPINILVDSECSNNFVSTNIVHRLQLPIVQSTQPYDVALADGSFLT*NTIV 38
           + +LG++ GK + ILVDS  + +F+S+ I   LQ  +V    P  V +A+GS LT  T V
Sbjct: 476 MRMLGYVQGKEVLILVDSGSTASFISSKIAQTLQ-GVVTLEPPVQVKVANGSILTCLTSV 534

Query: 37  QQLPFDVQDY 8
            +  +  Q +
Sbjct: 535 PRCEWMTQGW 544


>tr|Q2R4A3|Q2R4A3_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g29170 PE=4 SV=1
          Length = 435

 Score = 41.2 bits (95), Expect = 0.039
 Identities = 22/56 (39%), Positives = 33/56 (58%)
 Frame = -2

Query: 223 QVLSLLGFIHGKPINILVDSECSNNFVSTNIVHRLQLPIVQSTQPYDVALADGSFL 56
           +++ L G I    + +LVDS  S++F+S  +VHRLQ  +  S  P  V +ADG  L
Sbjct: 352 RIVRLQGLIERHEVLMLVDSGSSHSFISEQLVHRLQ-GVCSSVTPLKVKIADGGIL 406


>tr|Q2QUM2|Q2QUM2_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g15780 PE=4 SV=2
          Length = 1219

 Score = 41.2 bits (95), Expect = 0.039
 Identities = 21/55 (38%), Positives = 34/55 (61%)
 Frame = -2

Query: 217 LSLLGFIHGKPINILVDSECSNNFVSTNIVHRLQLPIVQSTQPYDVALADGSFLT 53
           + +LG++ GK + ILVDS  + +F+++ I   LQ  +V    P  V +A+GS LT
Sbjct: 398 MRMLGYVQGKEVLILVDSGSTTSFITSKIAQTLQ-GVVTLEPPVQVKVANGSILT 451


>tr|A3CB99|A3CB99_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032571 PE=4 SV=1
          Length = 235

 Score = 41.2 bits (95), Expect = 0.039
 Identities = 22/56 (39%), Positives = 33/56 (58%)
 Frame = -2

Query: 223 QVLSLLGFIHGKPINILVDSECSNNFVSTNIVHRLQLPIVQSTQPYDVALADGSFL 56
           +++ L G I    + +LVDS  S++F+S  +VHRLQ  +  S  P  V +ADG  L
Sbjct: 152 RIVRLQGLIERHEVLMLVDSGSSHSFISEQLVHRLQ-GVCSSVTPLKVKIADGGIL 206


>tr|A5C9A7|A5C9A7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020633 PE=4 SV=1
          Length = 1852

 Score = 40.8 bits (94), Expect = 0.051
 Identities = 21/62 (33%), Positives = 38/62 (61%)
 Frame = -2

Query: 199 IHGKPINILVDSECSNNFVSTNIVHRLQLPIVQSTQPYDVALADGSFLT*NTIVQQLPFD 20
           I  +PI +L+DS  ++NF+S  +   L+LP+V  T+ + V +A+G  L      +++P D
Sbjct: 274 IKSQPIMVLIDSGSTHNFLSDKVARTLRLPVV-PTKSFTVHVANGERLLCQGRFEKVPID 332

Query: 19  VQ 14
           +Q
Sbjct: 333 LQ 334


>tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein OS=Glycine max PE=4 SV=1
          Length = 1552

 Score = 40.0 bits (92), Expect = 0.088
 Identities = 23/64 (35%), Positives = 34/64 (53%)
 Frame = -2

Query: 205 GFIHGKPINILVDSECSNNFVSTNIVHRLQLPIVQSTQPYDVALADGSFLT*NTIVQQLP 26
           G + G  + ILVD   S+NF+   +   L+LP V+      V + +G  L+   IVQQLP
Sbjct: 395 GQVGGIAVKILVDGGSSDNFIQPRVAQVLKLP-VEPAPNLRVLVGNGQILSAEGIVQQLP 453

Query: 25  FDVQ 14
             +Q
Sbjct: 454 LHIQ 457