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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921470
Clone id YMU001_000150_C10
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGAACATTAAACATGGATTTGCTAGCGAGTGGAGGTTTTGGATGGTGGCAGGACTTCCAG
ACGACGCCAGCCATTTTGGACAATGTTGTTCGACAGATGCTGGAACTTTATGGATCATGA
ACAAAGAGAGGATAGAGGCTTGCAATGTTTGGATTTCCATTGAGAAGAATACAACAACAA
TGTGCTGATGCAGATAATGAGGGGCAAAGGCTCTCTCCGATTCTTTTACATACATGGAAG
TAAACTAGTGGTTCTCACCTCTTGTTTCTATTCCCTGTTGTGCCTCCTAAGCATAGGTGC
TCTCTGCTATGTTGTATCATTAGAAGGTAGCCATTTTCTTATACTTGGCTTGAAGCTTCA
GACGTGGTTGAAACCAATCACGTAATTTGGGGGAGGGGGGGCGGATTAGTTTGCCACAGT
AATTCCTTCCCCTTTGAAATTGGAGGTGCTGTCCTTTGTGGACAGCATCTGCTTCTTGAG
CGTGTCTGTCACCTTCACAATGTATATTCTATACTC
■■Homology search results ■■ -
sp_hit_id Q9FKE6
Definition sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana
Align length 35
Score (bit) 37.7
E-value 0.032
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921470|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_C10.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYC...    38   0.032
sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYC...    38   0.032
sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonic...    37   0.042
sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonic...    37   0.042
sp|Q9VCS8|OR94B_DROME Putative odorant receptor 94b OS=Drosophil...    32   1.8  
sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonic...    32   2.3  
sp|Q2TSC7|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransfer...    30   5.1  
sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thalia...    30   8.8  

>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana
           GN=CYCT1-5 PE=2 SV=2
          Length = 579

 Score = 37.7 bits (86), Expect = 0.032
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L++V  QMLELY
Sbjct: 233 LKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 267


>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana
           GN=CYCT1-4 PE=2 SV=1
          Length = 541

 Score = 37.7 bits (86), Expect = 0.032
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L++V  QMLELY
Sbjct: 233 LKVKLPSDGEKVWWQEFDVTPRQLEDVSNQMLELY 267


>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica
           GN=CYCT1-1 PE=2 SV=1
          Length = 543

 Score = 37.4 bits (85), Expect = 0.042
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L+ V  QMLELY
Sbjct: 236 LKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 270


>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica
           GN=CYCT1-3 PE=3 SV=2
          Length = 490

 Score = 37.4 bits (85), Expect = 0.042
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L+ V  QMLELY
Sbjct: 237 LKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 271


>sp|Q9VCS8|OR94B_DROME Putative odorant receptor 94b OS=Drosophila
           melanogaster GN=Or94b PE=3 SV=1
          Length = 383

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 218 RFFYIHGSKLVVLTSCFYSLLCLLSIGALCYVVSLEGSHFLILGLKLQ 361
           R+FY  G  +V +T C  S + L ++G  CY +    S F +LG++L+
Sbjct: 173 RYFYAWGYNVVAMTLCCLSNILLDTLG--CYFMFHIASLFRLLGMRLE 218


>sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica
           GN=CYCT1-1 PE=3 SV=2
          Length = 446

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 22  LASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L S G  WW +F   P  L  V++QM EL+
Sbjct: 213 LPSDGKVWWHEFDVAPKQLQAVIQQMTELF 242


>sp|Q2TSC7|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransferase
           1 OS=Lotus japonicus GN=PCS1 PE=2 SV=1
          Length = 501

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = -2

Query: 374 VSTTSEASSQV*ENGYLLMIQHSREHLCLGGTTGNRNKR*EPLVYFHVCKRIGESLCPSL 195
           +S   E   QV   G    +     H C G T  + ++   P++   VC +  E L   +
Sbjct: 302 LSVKEEILKQVQRTGLFKHVASFLSHSCSGHTPTSGDRDTFPVIAASVCCQGAEILGGKI 361

Query: 194 SASAHCCC 171
           S+SA  CC
Sbjct: 362 SSSAEYCC 369


>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana
           GN=CYCT1-1 PE=3 SV=1
          Length = 247

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 13  MDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           M L   G   WW++F  T   L  +  QML+LY
Sbjct: 204 MTLPCDGDKAWWREFDVTKRQLWEICDQMLDLY 236
tr_hit_id A9SK15
Definition tr|A9SK15|A9SK15_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 35
Score (bit) 38.5
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921470|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_C10.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SK15|A9SK15_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.20 
tr|A9TMA9|A9TMA9_PHYPA Predicted protein (Fragment) OS=Physcomit...    38   0.35 
tr|A7QCS7|A7QCS7_VITVI Chromosome undetermined scaffold_79, whol...    38   0.35 
tr|A5B2H4|A5B2H4_VITVI Putative uncharacterized protein OS=Vitis...    38   0.35 
tr|Q6EEW1|Q6EEW1_MEDTR Cyclin T1 OS=Medicago truncatula PE=2 SV=1      37   0.45 
tr|B8BJ73|B8BJ73_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.45 
tr|B7FLS8|B7FLS8_MEDTR Putative uncharacterized protein OS=Medic...    37   0.45 
tr|B7EPW6|B7EPW6_ORYSJ cDNA clone:J013153K21, full insert sequen...    37   0.45 
tr|A9PFH1|A9PFH1_POPTR Putative uncharacterized protein OS=Popul...    37   0.45 
tr|A7QD89|A7QD89_VITVI Chromosome undetermined scaffold_80, whol...    37   0.45 
tr|A7NWJ7|A7NWJ7_VITVI Chromosome chr5 scaffold_2, whole genome ...    37   0.45 
tr|A3CHD6|A3CHD6_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.45 
tr|A3C8T7|A3C8T7_ORYSJ Putative uncharacterized protein OS=Oryza...    37   0.45 
tr|A3B0N3|A3B0N3_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.3  
tr|B4H634|B4H634_DROPE GL24574 OS=Drosophila persimilis GN=GL245...    35   1.7  
tr|A8NMY0|A8NMY0_BRUMA Putative uncharacterized protein OS=Brugi...    35   1.7  
tr|B6L3H8|B6L3H8_BRAFL Putative uncharacterized protein OS=Branc...    34   3.7  
tr|Q4E4L4|Q4E4L4_TRYCR Putative uncharacterized protein OS=Trypa...    33   6.5  

>tr|A9SK15|A9SK15_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_17473 PE=3 SV=1
          Length = 230

 Score = 38.5 bits (88), Expect = 0.20
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L ++L   G   WWQ+F+ TP  L+ V  QMLELY
Sbjct: 193 LKVNLPKEGDKVWWQEFEVTPRQLEEVSNQMLELY 227


>tr|A9TMA9|A9TMA9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_42949 PE=3 SV=1
          Length = 406

 Score = 37.7 bits (86), Expect = 0.35
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L ++L   G   WWQ F+ TP  L+ V  QMLELY
Sbjct: 203 LKVNLPKDGDKVWWQQFEVTPRQLEEVSNQMLELY 237


>tr|A7QCS7|A7QCS7_VITVI Chromosome undetermined scaffold_79, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035533001 PE=3 SV=1
          Length = 502

 Score = 37.7 bits (86), Expect = 0.35
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L+ +  QMLELY
Sbjct: 231 LKVKLPSDGEVVWWQEFDVTPRQLEEISNQMLELY 265


>tr|A5B2H4|A5B2H4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_039383 PE=4 SV=1
          Length = 481

 Score = 37.7 bits (86), Expect = 0.35
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L+ +  QMLELY
Sbjct: 137 LKVKLPSDGEVVWWQEFDVTPRQLEEISNQMLELY 171


>tr|Q6EEW1|Q6EEW1_MEDTR Cyclin T1 OS=Medicago truncatula PE=2 SV=1
          Length = 372

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 17/35 (48%), Positives = 25/35 (71%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           LNMDL A      WQ+FQ TP++L +V +Q++EL+
Sbjct: 340 LNMDLAAYKNI--WQEFQATPSVLQDVSQQLMELF 372


>tr|B8BJ73|B8BJ73_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_35185 PE=4 SV=1
          Length = 490

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L+ V  QMLELY
Sbjct: 237 LKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 271


>tr|B7FLS8|B7FLS8_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 395

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L+ V  QMLELY
Sbjct: 234 LKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 268


>tr|B7EPW6|B7EPW6_ORYSJ cDNA clone:J013153K21, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 543

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L+ V  QMLELY
Sbjct: 236 LKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 270


>tr|A9PFH1|A9PFH1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 383

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L+ V  QMLELY
Sbjct: 23  LKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 57


>tr|A7QD89|A7QD89_VITVI Chromosome undetermined scaffold_80, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035737001 PE=3 SV=1
          Length = 523

 Score = 37.4 bits (85), Expect = 0.45
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   LNMDLLASGGFGWWQDFQTTPAILDNVVRQMLELY 111
           L + L + G   WWQ+F  TP  L+ V  QMLELY
Sbjct: 233 LKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELY 267