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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921490
Clone id YMU001_000150_E09
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCTGAAGCATTATCAGTTCAGAACCAAATCCTTATTGCCTTGCTCCAACTCTTGTGGTAG
TTATCCTGGGGCATGTGATGATTTCTGCCTGGCTTTTGAATGATTTTCTAGAGTTCCCTC
ACCTTTCTCGTAGTCACTGGTATCGTCAGGCATTTGCAAGCGATGGAGTCGCTCTTGTAT
CATCATCAAACCAACAGCGTGATGAGCATCATAACACAAGGTTTCGATGATTTTGAACCC
TTGAGTTATGGATTGATCAAATGCCAAAAGGGCACACATTTGGATAGCCATAAGGTAATT
CACAATTAGATACCTTCACCACGACGAGATGATCTCAGAGCATCTGTACTATCAATGGCC
CCTCTCAAGATGGGCAAAGACTCATCCAATAAATGATCAGTTCCCAAGGTCATCACACCC
ATGCTCTGCCTTTTCTTCTGGACCCCTTTTCCAACAGCATCATCCAAGATAGTACAATGT
GGCCCCAAATTCCTC
■■Homology search results ■■ -
sp_hit_id Q9TXQ1
Definition sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5 OS=Caenorhabditis elegans
Align length 65
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921490|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_E09.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5 OS=Caenor...    32   1.6  
sp|Q0IHV1|INF2_XENTR Inverted formin-2 OS=Xenopus tropicalis GN=...    32   2.1  
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus punc...    30   4.6  
sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN...    30   4.6  
sp|O15197|EPHB6_HUMAN Ephrin type-B receptor 6 OS=Homo sapiens G...    30   4.6  
sp|P0C0K7|EPHB6_RAT Ephrin type-B receptor 6 OS=Rattus norvegicu...    30   6.0  
sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsi...    30   6.1  

>sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5
           OS=Caenorhabditis elegans GN=pme-5 PE=2 SV=1
          Length = 2276

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +3

Query: 12  ISSEPNPYCLAPTLVVVILGHVMISAWLLNDFLEFPHLSRSHWYRQAFASDGVALVSSSN 191
           I SEPN + L P  V  + GH  I  WL    LE PH  +++    A  ++G  L+S+  
Sbjct: 591 ILSEPNDWQLYPLSVAYLKGHYGIVTWL----LEGPHKDKAN--INAKDNNGATLLSNLL 644

Query: 192 QQRDE 206
              DE
Sbjct: 645 SYADE 649


>sp|Q0IHV1|INF2_XENTR Inverted formin-2 OS=Xenopus tropicalis GN=inf2
            PE=2 SV=1
          Length = 1380

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = -1

Query: 273  ALLAFDQSITQGFKIIETLC----YDAHHAVGLMMIQERLHRLQMPDDTSDYEKGEGTLE 106
            AL   D ++T+G ++ E  C    Y  H  +G   +    H   +   + D +K +    
Sbjct: 1291 ALQTRDTTVTEGSQVEEDKCNDEGYPEHKTMGEHPLNSSSHSTTLQQSSEDGQKVKRGSS 1350

Query: 105  NHSKARQKSSH 73
             H K R+ S H
Sbjct: 1351 KHKKKRRSSKH 1361


>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus
          punctatus GN=rpl13 PE=2 SV=3
          Length = 211

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 92 PGRNHHMPQDNYHKSWSKAIRIWF 21
          P RN  +   ++HK W K +R WF
Sbjct: 3  PSRNGMILNPHFHKDWQKRVRTWF 26


>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio
          GN=rpl13 PE=2 SV=3
          Length = 211

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 92 PGRNHHMPQDNYHKSWSKAIRIWF 21
          P RN  +   ++HK W K +R WF
Sbjct: 3  PSRNGMILNPHFHKDWQKRVRTWF 26


>sp|O15197|EPHB6_HUMAN Ephrin type-B receptor 6 OS=Homo sapiens
           GN=EPHB6 PE=1 SV=2
          Length = 1021

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 299 FTIRYLHHDEMISEHLYYQWPLSRWAKTHPI--NDQFPRSSHPCSAFSS 439
           FT+ Y   +E  S      W L RW K   I  ++ FP SS   S+ SS
Sbjct: 128 FTLYYRQAEEPDSPDSVSSWHLKRWTKVDTIAADESFPSSSSSSSSSSS 176


>sp|P0C0K7|EPHB6_RAT Ephrin type-B receptor 6 OS=Rattus norvegicus
           GN=Ephb6 PE=2 SV=1
          Length = 1013

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 299 FTIRYLHHDEMISEHLYYQWPLSRWAKTHPI--NDQFPRSSHPCSAFSSGP 445
           FT+ Y   DE  S      W L RW K   I  ++ FP SS   S+++ GP
Sbjct: 128 FTLYYRQADEPDSPDSISAWHLKRWTKVDTIAADESFPASS-SSSSWAVGP 177


>sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsis
           thaliana GN=FPP5 PE=2 SV=2
          Length = 996

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 181 HHQTNSVMSIITQGFDDFEPLSYGLIKCQKGTHLDSHKV 297
           HH   SV S+   GFD+    S    +C   T LDSHKV
Sbjct: 432 HHYPPSVTSVSEDGFDEEGSSS----ECGPATSLDSHKV 466
tr_hit_id B0XHZ0
Definition tr|B0XHZ0|B0XHZ0_CULQU Putative uncharacterized protein OS=Culex quinquefasciatus
Align length 83
Score (bit) 36.2
E-value 0.86
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921490|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_E09.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0XHZ0|B0XHZ0_CULQU Putative uncharacterized protein OS=Culex...    36   0.86 
tr|B0Z9L7|B0Z9L7_9BILA 60S ribosomal protein L13 OS=Lineus virid...    34   3.3  
tr|Q3A8Q8|Q3A8Q8_CARHZ Putative adenylylsulfate reductase, alpha...    34   4.3  
tr|B4LI26|B4LI26_DROVI GJ12786 OS=Drosophila virilis GN=GJ12786 ...    33   5.6  
tr|B2YHY9|B2YHY9_9BILA Putative 60S ribosomal protein RPL13 (Fra...    33   7.3  
tr|A6GDM3|A6GDM3_9DELT Metalloendopeptidase, putative, glycoprot...    33   9.5  

>tr|B0XHZ0|B0XHZ0_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ018914 PE=4 SV=1
          Length = 516

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 26/83 (31%), Positives = 40/83 (48%)
 Frame = -2

Query: 452 GKGVQKKRQSMGVMTLGTDHLLDESLPILRGAIDSTDALRSSRRGEGI*L*ITLWLSKCV 273
           GK    +R++  V TL T   +  +L I+ GA           RGEG+     LW ++  
Sbjct: 431 GKSGNHRRRTSTVRTLATLAYITFNLLIMIGAEFGPTG---GGRGEGL-----LWRAEYP 482

Query: 272 PFWHLINP*LKGSKSSKPCVMML 204
           PFWHL +  +  +  S PC ++L
Sbjct: 483 PFWHLFSTMMARACPSMPCDVLL 505


>tr|B0Z9L7|B0Z9L7_9BILA 60S ribosomal protein L13 OS=Lineus
          viridis PE=2 SV=1
          Length = 207

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 92 PGRNHHMPQDNYHKSWSKAIRIWF 21
          P RN+ +P  ++HK W K +R WF
Sbjct: 3  PKRNNMVPNGHFHKEWQKYVRTWF 26


>tr|Q3A8Q8|Q3A8Q8_CARHZ Putative adenylylsulfate reductase, alpha
           subunit OS=Carboxydothermus hydrogenoformans (strain
           Z-2901 / DSM 6008) GN=CHY_2691 PE=4 SV=1
          Length = 532

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 2   LKHYQFRTKSLLPCSNSCGSYPG-ACDDFCL 91
           +KH  FRT+S LPC    G YPG A +D+ L
Sbjct: 476 IKHMAFRTESRLPCYQERGDYPGKAPEDYLL 506


>tr|B4LI26|B4LI26_DROVI GJ12786 OS=Drosophila virilis GN=GJ12786
           PE=4 SV=1
          Length = 1201

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 305 IRYLHHDEMISEH--LYYQWPLSRWAKTHPINDQFPRSSHP---CSAFSSGPLFQQHHPR 469
           +++ HHDE  +EH  +++    S     H  N  +P +SH     S F S   + QHH R
Sbjct: 777 VQHYHHDEHHTEHHAVHHAELHSEAPFDHSFNSIYPETSHSDFGSSGFGSYGDYSQHHER 836

Query: 470 *YNVA 484
             NV+
Sbjct: 837 SVNVS 841


>tr|B2YHY9|B2YHY9_9BILA Putative 60S ribosomal protein RPL13
          (Fragment) OS=Novocrania anomala PE=2 SV=1
          Length = 134

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 92 PGRNHHMPQDNYHKSWSKAIRIWF 21
          P RN+ +P  ++HK W + +R WF
Sbjct: 3  PKRNNMVPNGHFHKDWQRYVRTWF 26


>tr|A6GDM3|A6GDM3_9DELT Metalloendopeptidase, putative,
           glycoprotease family protein OS=Plesiocystis pacifica
           SIR-1 GN=PPSIR1_32814 PE=4 SV=1
          Length = 366

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 476 CTILDDAVGKGVQKKRQSMGVMT-LGTDHLLDESLPILRGAIDSTDALRSSRRGEGI 309
           CT+L   V   V+   +  GV+  L + H LD   P+LRGA++    LR    GE +
Sbjct: 28  CTVLSSVVASQVEVHARFGGVVPELASRHHLDALAPVLRGAVEQA-GLRFDELGESL 83