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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921499
Clone id YMU001_000150_F08
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGTTTCTGTACATAGAGTCCTTTCTCTGAGGAATCCTTTAAGCCTGTCAGTGGCCGTGA
AACACCAGGCAGACCATTCAAAAATCGATGGTCAAGTGGAGCCCCACAAGAGCTTAAAGG
TCCACTAAAAGCTCTATCTCGATGATTGGATCTTGTCCGGAAAGAATCATCAATGGCTCT
GCTTGGTAACCTCTCATAATCTCTATCATCGTCCCTGTTGCGGTAACCAGCAAGAACGTA
TTCAGACACCAAGGGCCCACTTGAAGCTCGGCGGCCCTCTTGCTGGGTCTTTTCTAATCT
CAAGTCTCGACCCTCCAGCTTTTGAGGTACTTTAACAGATTGTTTAGACTCCCCTCTATC
ATCCCTCCCATGTGGTTCTGGCACTTCAGAAGCCCCATGATCTCGACCGATAAGATCCAT
CGCTTTAAGCTCTTGCTGAACCAACTCATCCTCAGGTACTTCCAATGCTTTCACTAGTTC
TTCTGATTTAAACTCAAGAGAGCTTGGCAGCCTACCAGATTGCCGTATTGAGACACGCCC
TCCCACATCAGCGGTAGGTTCTATACTAA
■■Homology search results ■■ -
sp_hit_id Q7TN16
Definition sp|Q7TN16|HHIP_MOUSE Hedgehog-interacting protein OS=Mus musculus
Align length 46
Score (bit) 34.3
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921499|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_F08.
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TN16|HHIP_MOUSE Hedgehog-interacting protein OS=Mus musculu...    34   0.45 
sp|Q96QV1|HHIP_HUMAN Hedgehog-interacting protein OS=Homo sapien...    33   0.99 
sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=H...    33   0.99 
sp|P45336|QSEC_HAEIN Sensor protein qseC OS=Haemophilus influenz...    32   1.7  
sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7 OS=P...    32   2.2  
sp|Q9CUL5|IQCA_MOUSE IQ and AAA domain-containing protein OS=Mus...    32   2.9  
sp|Q8C9S4|CJ118_MOUSE Uncharacterized protein C10orf118 homolog ...    31   4.9  
sp|Q89WB3|PNP_BRAJA Polyribonucleotide nucleotidyltransferase OS...    30   6.4  
sp|O67718|SECA_AQUAE Protein translocase subunit secA OS=Aquifex...    30   8.4  
sp|A1TLL2|PNP_ACIAC Polyribonucleotide nucleotidyltransferase OS...    30   8.4  
sp|O75330|HMMR_HUMAN Hyaluronan mediated motility receptor OS=Ho...    30   8.4  

>sp|Q7TN16|HHIP_MOUSE Hedgehog-interacting protein OS=Mus musculus
           GN=Hhip PE=1 SV=2
          Length = 700

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -3

Query: 363 DDRGESKQSVKVPQKLEGRDLRLEKTQQEGRRASSGPLVSEYVLAG 226
           D  G+++ S ++ Q ++GRD   E +  E +  S+GPLV  +V  G
Sbjct: 454 DSNGKNRSSARILQIIKGRDYESEPSLLEFKPFSNGPLVGGFVYRG 499


>sp|Q96QV1|HHIP_HUMAN Hedgehog-interacting protein OS=Homo sapiens
           GN=HHIP PE=2 SV=3
          Length = 700

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -3

Query: 363 DDRGESKQSVKVPQKLEGRDLRLEKTQQEGRRASSGPLVSEYVLAG 226
           D  G+++ S ++ Q ++G+D   E +  E +  S+GPLV  +V  G
Sbjct: 454 DSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRG 499


>sp|Q8WUX9|CHMP7_HUMAN Charged multivesicular body protein 7 OS=Homo
           sapiens GN=CHMP7 PE=1 SV=1
          Length = 453

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = -3

Query: 564 IEPTADVGGRVSIRQSGRLPSSLEFKSEELVKALEVPEDELVQQELKAMDLIGRDHGASE 385
           I+   D    VS   +G + + L+F SEEL K L++   +  ++ L   D     H  + 
Sbjct: 351 IQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRNRHFTNS 410

Query: 384 VPEPHGRDDRGESK 343
           VP P   D   E++
Sbjct: 411 VPNPRISDAELEAE 424


>sp|P45336|QSEC_HAEIN Sensor protein qseC OS=Haemophilus influenzae
           GN=qseC PE=1 SV=1
          Length = 451

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
 Frame = -3

Query: 456 PEDELVQQELKAMDLIGRDHGASEVPE-----------PHGRDDRGE--SKQSVKVPQKL 316
           PED +V  ++ +  +I  D+G    PE           P G++++G       V    +L
Sbjct: 367 PEDTIVSVKISSSQIIIEDNGGGVEPEDLKKLGQRFYRPAGQNEKGSGLGLSIVMRIAEL 426

Query: 315 EGRDLRLEKTQQEGRRASSGPLVS 244
            G  +RLE   +EGRR     ++S
Sbjct: 427 HGFKVRLENVVKEGRRIGLKAIIS 450


>sp|Q5R812|CHMP7_PONAB Charged multivesicular body protein 7
           OS=Pongo abelii GN=CHMP7 PE=2 SV=1
          Length = 453

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -3

Query: 564 IEPTADVGGRVSIRQSGRLPSSLEFKSEELVKALEVPEDELVQQELKAMDLIGRDHGASE 385
           I+   D    VS   +G + + L+F SEEL K L++   +  ++ L   D     H  + 
Sbjct: 351 IQELCDTQDEVSQTLAGGVTNGLDFDSEELEKELDILLQDTTKEPLDLPDNPRDRHFTNS 410

Query: 384 VPEPHGRD 361
           VP P   D
Sbjct: 411 VPNPRISD 418


>sp|Q9CUL5|IQCA_MOUSE IQ and AAA domain-containing protein OS=Mus
           musculus GN=Iqca PE=2 SV=2
          Length = 857

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = -3

Query: 495 EFKSEELVKALEVPEDELVQQELKAMDL-IGRDHGASEVPEPHGRDDRGESKQSVKVPQK 319
           E K +EL   + V  DEL++QELK + L + R+    E+P    R  +G+ +Q++  P++
Sbjct: 435 EEKRKELEMEIRVQVDELMRQELKNLKLAVNRE---MEIPP---RQKKGKKEQTIVFPRE 488

Query: 318 LEG 310
           + G
Sbjct: 489 VFG 491


>sp|Q8C9S4|CJ118_MOUSE Uncharacterized protein C10orf118 homolog
           OS=Mus musculus GN=Otg1 PE=2 SV=2
          Length = 917

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
 Frame = -3

Query: 498 LEFKSEELVKALEVPEDELVQQELKAMDLIGRDHG--ASEVPEPHGRDDRGESKQSVKVP 325
           LE + EEL K ++  +D+LV Q++ A + I + H   A  + + + + +    ++   V 
Sbjct: 273 LELRIEELNKEIKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQANKKCEEARQEKEAMVM 332

Query: 324 QKLEGR----DLRLEKTQQE 277
           + + G     DLR EK   E
Sbjct: 333 KYVRGEKEALDLRKEKETLE 352


>sp|Q89WB3|PNP_BRAJA Polyribonucleotide nucleotidyltransferase
           OS=Bradyrhizobium japonicum GN=pnp PE=3 SV=1
          Length = 720

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 369 GRDDRGESKQSVKVPQKLEGRDLRLEKTQQEGRRA 265
           G DDRG+++ S+KV  +  G DL  +    EG +A
Sbjct: 679 GFDDRGKTRLSMKVVDQTTGEDLEAKDKVAEGEKA 713


>sp|O67718|SECA_AQUAE Protein translocase subunit secA OS=Aquifex
            aeolicus GN=secA PE=3 SV=1
          Length = 984

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 20/75 (26%), Positives = 39/75 (52%)
 Frame = -3

Query: 501  SLEFKSEELVKALEVPEDELVQQELKAMDLIGRDHGASEVPEPHGRDDRGESKQSVKVPQ 322
            +++ KSEE +K +E  E++  Q+ L+  +L G    + + P P    +R +        +
Sbjct: 917  NVQIKSEEEIKEVEHEEEKKHQRLLEEAELQGVQGKSDKKPRPKTLKERLKE-------E 969

Query: 321  KLEGRDLRLEKTQQE 277
            +L  R L+ +K +QE
Sbjct: 970  RLRKRKLKAKKKEQE 984


>sp|A1TLL2|PNP_ACIAC Polyribonucleotide nucleotidyltransferase
           OS=Acidovorax avenae subsp. citrulli (strain AAC00-1)
           GN=pnp PE=3 SV=1
          Length = 758

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -3

Query: 474 VKALEVPEDELVQQELKAMDLIGRDHGASEVPEPHGRDDRGESKQSVKVPQKLEGRDLR- 298
           VK LE  E   V+  ++A  L+ R  G S  P P  R +RG+       P++ E R+ R 
Sbjct: 676 VKVLETDEKGRVKLSMRA--LLDRPMGDSGRPAPAERGERGDRGDRGDRPERGERRERRE 733

Query: 297 -LEKTQQEGRRASSG 256
                QQ+ ++ S+G
Sbjct: 734 PAGADQQQQQQQSTG 748
tr_hit_id Q2RYI0
Definition tr|Q2RYI0|Q2RYI0_RHORT Sigma-54 (RpoN) OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Align length 70
Score (bit) 35.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921499|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_F08.
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2RYI0|Q2RYI0_RHORT Sigma-54 (RpoN) OS=Rhodospirillum rubrum ...    35   2.9  
tr|B0WN22|B0WN22_CULQU Putative uncharacterized protein OS=Culex...    35   3.8  
tr|B6G020|B6G020_9CLOT Putative uncharacterized protein OS=Clost...    34   6.5  
tr|B8CCA2|B8CCA2_THAPS Chromosome condensation protein-like prot...    34   6.5  
tr|Q7QIZ0|Q7QIZ0_ANOGA AGAP007137-PA (Fragment) OS=Anopheles gam...    34   6.5  
tr|Q4DK01|Q4DK01_TRYCR Putative uncharacterized protein OS=Trypa...    34   6.5  
tr|Q4CTG4|Q4CTG4_TRYCR Putative uncharacterized protein OS=Trypa...    34   6.5  
tr|A7URQ4|A7URQ4_ANOGA AGAP007137-PB (Fragment) OS=Anopheles gam...    34   6.5  
tr|Q82JR0|Q82JR0_STRAW Putative sensor-like histidine kinase OS=...    33   8.5  
tr|Q0A8W2|Q0A8W2_ALHEH Sensor protein OS=Alkalilimnicola ehrlich...    33   8.5  
tr|A9SAP6|A9SAP6_PHYPA Predicted protein OS=Physcomitrella paten...    33   8.5  

>tr|Q2RYI0|Q2RYI0_RHORT Sigma-54 (RpoN) OS=Rhodospirillum rubrum
           (strain ATCC 11170 / NCIB 8255) GN=Rru_A0010 PE=4 SV=1
          Length = 500

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = -3

Query: 537 RVSIRQSGRLPSSLEFKSEELVKALEVPEDEL---VQQELKAMDLIGRDHGASEVPEPHG 367
           R+ +RQ+  L  + +   ++ +K L++   EL   V QEL+   L+ RD  A   PEP  
Sbjct: 6   RLDLRQTQSLVMTPQL--QQAIKLLQLSNMELSVYVDQELERNPLLERDDSADVSPEPDR 63

Query: 366 RDDRGESKQS 337
           R++R +S ++
Sbjct: 64  REERADSAET 73


>tr|B0WN22|B0WN22_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ008428 PE=4 SV=1
          Length = 785

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 50/207 (24%), Positives = 79/207 (38%), Gaps = 33/207 (15%)
 Frame = -3

Query: 555 TADVGGRVS-----IRQSGRLPSSLEFKSE--------------ELVKALEVPEDEL--- 442
           T D GGRV      +R S  L  SL+ + +              +L  +L+  E EL   
Sbjct: 218 TDDSGGRVEKLENELRISKELIQSLKLERKKLRSDKSDLLSQVKQLCASLQDKEQELRNF 277

Query: 441 ---VQQELKAMDLIGRDHGASEVPE-----PHGRDDRGESKQSVKVPQKLEGRDLRLEKT 286
               +Q ++  ++    H +    E      H RD   E+++S+ +  +L  RD++L++T
Sbjct: 278 IRNFEQRIRETEVSSAKHNSERERERWSLLKHARD---EAERSIALAAQLNARDIQLQRT 334

Query: 285 Q---QEGRRASSGPLVSEYVLAGXXXXXXXXXXXRLPSRAIDDSFRTRSNHRDRAFSGPL 115
           Q   QE RR  SG +  +  L               PS  +        NH   A  G  
Sbjct: 335 QEQLQEARRQLSGCMSDQESLVSAAPLTP-------PSGHL--------NHTQTATGGYS 379

Query: 114 SSCGAPLDHRFLNGLPGVSRPLTGLKD 34
           +  G P D    +   GV   + G  D
Sbjct: 380 NISGTPGDRGSCSADSGVRELIAGSSD 406


>tr|B6G020|B6G020_9CLOT Putative uncharacterized protein
           OS=Clostridium hiranonis DSM 13275 GN=CLOHIR_01474 PE=4
           SV=1
          Length = 136

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = -1

Query: 446 SWFSKSLKRWILSVEIMGLLKCQNHMGGMIEGSLNNLLKYLKSWR 312
           +WF+     W L+++ + LL C +++ G+++G LN  L  L S+R
Sbjct: 20  TWFTWLFGGWDLALKSLVLLMCVDYITGLVKGYLNKNLNSLTSFR 64


>tr|B8CCA2|B8CCA2_THAPS Chromosome condensation protein-like protein
           OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_42365
           PE=4 SV=1
          Length = 1268

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
 Frame = -3

Query: 495 EFKSEEL--VKALEVPEDELVQQELKAMDLIGRDHGASE----VPEPHGRDDRGES---- 346
           E + E+L  VKA E  +D L   + +A  L+G+D         + + HG   R E     
Sbjct: 202 EVRQEKLNRVKAAEKEKDGLAGAKAEAQALVGKDREIRRKKNILHQIHGMFARKEGEAAR 261

Query: 345 KQSVKVPQKLEGRDLRLEKTQQEGRRASSG 256
           +Q V++ ++LEG  L+L +  +  R   SG
Sbjct: 262 EQRVELVEQLEGERLKLSEADERVREIESG 291


>tr|Q7QIZ0|Q7QIZ0_ANOGA AGAP007137-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP007137 PE=4 SV=4
          Length = 842

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = -3

Query: 528 IRQSGRLPSSLEFKSEELVKALEVPEDELVQQELKAMDLIGRDHGASEVPEPHGRDDRGE 349
           + Q  +L SSL+ K +EL   +   E  + + E  +                H RD   E
Sbjct: 89  LSQVKQLCSSLQDKEQELRNFIRNYEQRIRESESNSAKQSTERERERWSLLKHARD---E 145

Query: 348 SKQSVKVPQKLEGRDLRLEKTQ---QEGRRASSG 256
           +++S+ +  +L  RDL+L++TQ   QE RR  SG
Sbjct: 146 AERSIALAAQLNARDLQLQRTQEQLQEARRQLSG 179


>tr|Q4DK01|Q4DK01_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053509671.30 PE=4 SV=1
          Length = 320

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = -3

Query: 516 GRLPSSLEFKSEELVKALEVPEDELVQQELKAMDLIGRDHGASEVPEPHGRDDRGESKQS 337
           GRL   +  + E   K     E+E    E++A+DL        +V E   R++R + ++ 
Sbjct: 133 GRLAEEVHQRLEREEKERARREEEQRAHEMRAIDLERIRRYEEKVRERREREERLQRERE 192

Query: 336 VKVPQKLEGRDLRLEKTQQEGRRAS 262
               Q+ E  ++R  + Q+E RR S
Sbjct: 193 AAERQRREEEEMRRRQQQEEARRRS 217


>tr|Q4CTG4|Q4CTG4_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053510767.60 PE=4 SV=1
          Length = 391

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = -3

Query: 516 GRLPSSLEFKSEELVKALEVPEDELVQQELKAMDLIGRDHGASEVPEPHGRDDRGESKQS 337
           GRL   +  + E   K     E+E    E++A+DL        +V E   R++R + ++ 
Sbjct: 204 GRLAEEVHQRLEREEKERARREEEQRAHEMRAIDLERIRQYEEKVRERREREERLQRERE 263

Query: 336 VKVPQKLEGRDLRLEKTQQEGRRAS 262
               Q+ E  ++R  + Q+E RR S
Sbjct: 264 AAERQRREEEEMRRRQQQEEARRRS 288


>tr|A7URQ4|A7URQ4_ANOGA AGAP007137-PB (Fragment) OS=Anopheles
           gambiae GN=AGAP007137 PE=4 SV=1
          Length = 680

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = -3

Query: 528 IRQSGRLPSSLEFKSEELVKALEVPEDELVQQELKAMDLIGRDHGASEVPEPHGRDDRGE 349
           + Q  +L SSL+ K +EL   +   E  + + E  +                H RD   E
Sbjct: 89  LSQVKQLCSSLQDKEQELRNFIRNYEQRIRESESNSAKQSTERERERWSLLKHARD---E 145

Query: 348 SKQSVKVPQKLEGRDLRLEKTQ---QEGRRASSG 256
           +++S+ +  +L  RDL+L++TQ   QE RR  SG
Sbjct: 146 AERSIALAAQLNARDLQLQRTQEQLQEARRQLSG 179


>tr|Q82JR0|Q82JR0_STRAW Putative sensor-like histidine kinase
           OS=Streptomyces avermitilis GN=cvnA6 PE=4 SV=1
          Length = 1278

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = -3

Query: 405 RDHGASEVPEPHGRDDRGESKQSVKVP-----QKLEGRDLRLEKTQQEGRRASSGP 253
           RD  AS  PEPHG  DRG S Q  + P      K  GR    +      +  SSGP
Sbjct: 7   RDGSASAEPEPHGGTDRGSSPQHAQNPGPGEAGKSGGRTGAPKAPTPPAKPTSSGP 62


>tr|Q0A8W2|Q0A8W2_ALHEH Sensor protein OS=Alkalilimnicola ehrlichei
           (strain MLHE-1) GN=Mlg_1376 PE=3 SV=1
          Length = 499

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
 Frame = -3

Query: 510 LPSSLEFKSEELVK------------ALEVPEDELVQQELKAMDLIGRDHGASEVPEPHG 367
           L SSLE + EE V+            +LE  E+E V+Q L+++  IGR +GA      + 
Sbjct: 40  LESSLEERLEEDVQLIARAIRLPVSHSLEREEEEAVRQALESVFTIGRVYGA------YV 93

Query: 366 RDDRGESKQSVKVPQKLEGRDLRLEKTQQEGRRASSGPLV 247
            D RGE   +V   +       RL+   +EGR      L+
Sbjct: 94  YDRRGEQVAAVGAVKPSAAERNRLQALAEEGRDTGEYELI 133