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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921501
Clone id YMU001_000150_F10
Library
Length 550
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGCAGGAGCTCTTATTGCAGTTTGAACGTTCTTACCTAGACCGTAATCAGCGGTGGTGGC
AAGATATGCCATGACGGCTGTGCATACCCACGTCGTTTGCTTCACCACCCTGCCTCGCGT
GCAAGCACCACCTCATGACATGGAAGGTATGGAAGCCCTTGTTGAGCCCCACAACAAATG
GAAGATGCCTGCATATGTGAGAGTGGTTTGAGGTATTGCTTCTCCTAAAAAGCACACCCA
TCTTTTGCTTCTTAAACATTGGGTAGTATATTCTCCTTGTTGCCAATGTTTGGAGATTGT
TGCTACCAAAATCTAGTGCTATATGCAGATTTCTACGGCCCTTCTGCAACCCTATTTGTG
AGTATACCGAGGATGAAGCTATAAGAAGGCCAAATTGCAGTATGCAAGAGACCCCTCATC
TCGAGCCCTGCTTGCAAACATGGTGACGATGACTCATGCCACACTTGCGAGCATACTGGC
ATTGCGTATATATGTAGTCACAAACAAACAACACAATAATCCTTAGTAAGCATCTTGTTT
GAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921501|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_F10.
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q6DYB5
Definition tr|Q6DYB5|Q6DYB5_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana
Align length 34
Score (bit) 33.1
E-value 10.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921501|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_F10.
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6DYB5|Q6DYB5_ARATH Putative uncharacterized protein OS=Arabi...    33   10.0 
tr|A2QRG0|A2QRG0_ASPNC Contig An08c0130, complete genome OS=Aspe...    33   10.0 

>tr|Q6DYB5|Q6DYB5_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana GN=At4G00530 PE=4 SV=1
          Length = 71

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 111 RVVKQTTWVCTAVMAYLATTADYGLGKNVQTAIR 10
           +VV++TT V TAV +Y   T DYG   NV   I+
Sbjct: 7   KVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIK 40


>tr|A2QRG0|A2QRG0_ASPNC Contig An08c0130, complete genome
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An08g05890 PE=4 SV=1
          Length = 601

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +1

Query: 61  KICHDGCAYPRRLLHHPA---SRASTTS*HGRYGSPC*APQQMEDACICESGL-RYCFS* 228
           ++ H+  A  R    HPA    R  T S HG  G PC  P      C   SG  +   S 
Sbjct: 366 ELLHEVAALQRAAPAHPAHTRGRCGTNSRHGYSGKPCLPPLSHHSTCPIVSGADKRQPSG 425

Query: 229 KAHPSF 246
           K HP+F
Sbjct: 426 KGHPAF 431