NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921503
Clone id YMU001_000150_F12
Library
Length 361
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATCAAGTATGAGGAGCGAAATATCCTGTGATCAACAGTGATCCTTCTGTCTCCATGATT
TACTCCAACTTCAACACTACCGACTACTGCCGCATCACTACCTTCACCTCCGCTTCCCTG
GTCTACGGCTACCTTGCAGGCGTGAGTTGGAATGTGAGAGGCCCATCAATGTACACAGCT
GGCTTGCTGGGATTAGCTGGAGGAATAATGTATGCTTATCAGAATTCGGCATTCCGGCTG
GTGGGACACTATCCCAATTATGAAGATCTTCCAAAATACAAGCTCAAAAAGTAGTCCATC
CTAGACATTGAATTTTATAGCACGTGTTCTAGAATTTTAAATGATATACATTGCTTAAGG
A
■■Homology search results ■■ -
sp_hit_id Q02854
Definition sp|Q02854|NUXM_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit OS=Neurospora crassa
Align length 89
Score (bit) 35.0
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921503|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_F12.
         (361 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02854|NUXM_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subun...    35   0.12 
sp|A1K1N5|RLMN1_AZOSB Ribosomal RNA large subunit methyltransfer...    31   2.2  
sp|Q83BD3|RBN_COXBU tRNA-processing ribonuclease BN OS=Coxiella ...    29   8.4  
sp|A9N9B0|RBN_COXBR tRNA-processing ribonuclease BN OS=Coxiella ...    29   8.4  
sp|A9KF31|RBN_COXBN tRNA-processing ribonuclease BN OS=Coxiella ...    29   8.4  

>sp|Q02854|NUXM_NEUCR NADH-ubiquinone oxidoreductase 21 kDa subunit
           OS=Neurospora crassa GN=nuo-21 PE=1 SV=1
          Length = 189

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
 Frame = +1

Query: 22  YPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYL------AGVSWNVRGPSMYTAG 183
           YP+I++DP    +      +DY   T   +A     YL      +GV       +M  A 
Sbjct: 19  YPLIDNDPHFRRVIGYARPSDYVHGTVAGAAGPGLLYLMEKMAPSGVGKGGFPKAMRLAT 78

Query: 184 LLGLAGGIMYAYQNSAFRLVGHYPNYEDL 270
            +G  GG +Y YQ S  R  G   N  ++
Sbjct: 79  AVGFFGGFLYFYQRSILRFYGMSENAREV 107


>sp|A1K1N5|RLMN1_AZOSB Ribosomal RNA large subunit methyltransferase
           N 1 OS=Azoarcus sp. (strain BH72) GN=rlmN1 PE=3 SV=2
          Length = 347

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 184 LLGLAGGIMYAYQNSAFRLVGHYPNYEDLPKYKLK 288
           LLG AGGI   ++N  F  VG Y  +E LP+ ++K
Sbjct: 166 LLGTAGGI--GHKNLVFSTVGDYRVFERLPRQRVK 198


>sp|Q83BD3|RBN_COXBU tRNA-processing ribonuclease BN OS=Coxiella
           burnetii GN=rbn PE=3 SV=1
          Length = 278

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 106 TSASLVYGYLAGVSWNVRGPSMYTAGLLGLAGGIMYAYQNSAFRLVGH 249
           TSA +V  YL+ ++ NV G S+     LG+   ++    N AF  + H
Sbjct: 76  TSAGMVAAYLSQLTQNVTGLSIINIFFLGIVALLLMYNINRAFVAIWH 123


>sp|A9N9B0|RBN_COXBR tRNA-processing ribonuclease BN OS=Coxiella
           burnetii (strain RSA 331 / Henzerling II) GN=rbn PE=3
           SV=1
          Length = 278

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 106 TSASLVYGYLAGVSWNVRGPSMYTAGLLGLAGGIMYAYQNSAFRLVGH 249
           TSA +V  YL+ ++ NV G S+     LG+   ++    N AF  + H
Sbjct: 76  TSAGMVAAYLSQLTQNVTGLSIINIFFLGIVALLLMYNINRAFVAIWH 123


>sp|A9KF31|RBN_COXBN tRNA-processing ribonuclease BN OS=Coxiella
           burnetii (strain Dugway 5J108-111) GN=rbn PE=3 SV=1
          Length = 278

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 106 TSASLVYGYLAGVSWNVRGPSMYTAGLLGLAGGIMYAYQNSAFRLVGH 249
           TSA +V  YL+ ++ NV G S+     LG+   ++    N AF  + H
Sbjct: 76  TSAGMVAAYLSQLTQNVTGLSIINIFFLGIVALLLMYNINRAFVAIWH 123
tr_hit_id A9NJY0
Definition tr|A9NJY0|A9NJY0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 90
Score (bit) 107.0
E-value 3.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921503|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_F12.
         (361 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NJY0|A9NJY0_PICSI Putative uncharacterized protein OS=Picea...   107   3e-22
tr|A9PA69|A9PA69_POPTR Putative uncharacterized protein OS=Popul...   104   3e-21
tr|A9STK6|A9STK6_PHYPA Predicted protein OS=Physcomitrella paten...   103   3e-21
tr|A7P0E7|A7P0E7_VITVI Chromosome chr19 scaffold_4, whole genome...   103   6e-21
tr|A5BYX3|A5BYX3_VITVI Putative uncharacterized protein OS=Vitis...   103   6e-21
tr|Q6ZKB0|Q6ZKB0_ORYSJ Putative uncharacterized protein OJ1124_B...   100   6e-20
tr|Q0J5I8|Q0J5I8_ORYSJ Os08g0431500 protein (Fragment) OS=Oryza ...   100   6e-20
tr|A3BTD8|A3BTD8_ORYSJ cDNA clone:J023121F15, full insert sequen...   100   6e-20
tr|A2YVH0|A2YVH0_ORYSI Putative uncharacterized protein OS=Oryza...   100   6e-20
tr|Q84W12|Q84W12_ARATH At4g16450 (Putative uncharacterized prote...    99   8e-20
tr|B6SRG1|B6SRG1_MAIZE Putative uncharacterized protein OS=Zea m...    99   8e-20
tr|O23489|O23489_ARATH Putative uncharacterized protein dl4250w ...    99   1e-19
tr|Q8LE57|Q8LE57_ARATH Putative uncharacterized protein OS=Arabi...    97   3e-19
tr|B8RIL5|B8RIL5_PSEMZ Putative uncharacterized protein 207 (Fra...    96   7e-19
tr|B8RIL3|B8RIL3_9CONI Putative uncharacterized protein 207 (Fra...    96   9e-19
tr|B8RIK9|B8RIK9_PINPE Putative uncharacterized protein 207 (Fra...    96   9e-19
tr|B8RIK7|B8RIK7_PINLA Putative uncharacterized protein 207 (Fra...    96   9e-19
tr|B8RIL4|B8RIL4_PICAB Putative uncharacterized protein 207 (Fra...    95   2e-18
tr|B8RIL2|B8RIL2_PINRE Putative uncharacterized protein 207 (Fra...    92   1e-17
tr|B8RIL1|B8RIL1_PINPO Putative uncharacterized protein 207 (Fra...    92   1e-17
tr|B8RIL0|B8RIL0_PINPS Putative uncharacterized protein 207 (Fra...    92   1e-17
tr|B8RIK5|B8RIK5_PINBN Putative uncharacterized protein 207 (Fra...    92   1e-17
tr|B8RIK8|B8RIK8_9CONI Putative uncharacterized protein 207 (Fra...    91   4e-17
tr|B8RIK6|B8RIK6_PINCO Putative uncharacterized protein 207 (Fra...    91   4e-17
tr|B8RHS1|B8RHS1_PINSY Putative uncharacterized protein 207 (Fra...    91   4e-17
tr|B8BVH7|B8BVH7_THAPS Predicted protein OS=Thalassiosira pseudo...    50   7e-05
tr|Q4P5K7|Q4P5K7_USTMA Putative uncharacterized protein OS=Ustil...    50   7e-05
tr|Q2HS27|Q2HS27_MEDTR Putative uncharacterized protein OS=Medic...    44   0.003
tr|A8N9C0|A8N9C0_COPC7 Putative uncharacterized protein OS=Copri...    44   0.005
tr|A8Q3H0|A8Q3H0_MALGO Putative uncharacterized protein OS=Malas...    43   0.007

>tr|A9NJY0|A9NJY0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 108

 Score =  107 bits (267), Expect = 3e-22
 Identities = 50/90 (55%), Positives = 69/90 (76%)
 Frame = +1

Query: 19  KYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGLA 198
           +YPVI+ +P  +   +NF+  DY R+TT TSAS+ +GYLAG + ++RGPSM TAG++GL 
Sbjct: 15  EYPVIDKNPPFTKAVANFSFLDYLRMTTITSASVPFGYLAGGNCSLRGPSMVTAGIIGLM 74

Query: 199 GGIMYAYQNSAFRLVGHYPNYEDLPKYKLK 288
           GG M+AYQNSA RL+G +PN ED+ +YK K
Sbjct: 75  GGFMFAYQNSAGRLMGLFPNEEDVARYKKK 104


>tr|A9PA69|A9PA69_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 105

 Score =  104 bits (259), Expect = 3e-21
 Identities = 45/88 (51%), Positives = 62/88 (70%)
 Frame = +1

Query: 19  KYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGLA 198
           +YPVI+ +P  + +  NFNT DYCR  T T  S+  GYL+G+   ++GPSM T GL+GL 
Sbjct: 12  EYPVIDRNPEFTKVVGNFNTLDYCRFITLTGVSVTVGYLSGIKPGIKGPSMVTGGLIGLM 71

Query: 199 GGIMYAYQNSAFRLVGHYPNYEDLPKYK 282
           GG MYAYQNSA RL+G +PN  ++ +Y+
Sbjct: 72  GGFMYAYQNSAGRLMGFFPNEGEVARYQ 99


>tr|A9STK6|A9STK6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_188302 PE=4 SV=1
          Length = 97

 Score =  103 bits (258), Expect = 3e-21
 Identities = 49/87 (56%), Positives = 64/87 (73%)
 Frame = +1

Query: 19  KYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGLA 198
           K+PVI  +P+ S   SNF+ +DY RI  FT  SL  GYLAG S N+RGPSMYTAG++GL 
Sbjct: 9   KFPVIERNPTASSTISNFSFSDYVRIAAFTGGSLPVGYLAGGSVNIRGPSMYTAGIIGLM 68

Query: 199 GGIMYAYQNSAFRLVGHYPNYEDLPKY 279
           GG MYAYQ SA RL+G +PN +++ ++
Sbjct: 69  GGFMYAYQCSAGRLMGMFPNDDEVARH 95


>tr|A7P0E7|A7P0E7_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027202001
           PE=4 SV=1
          Length = 100

 Score =  103 bits (256), Expect = 6e-21
 Identities = 44/88 (50%), Positives = 63/88 (71%)
 Frame = +1

Query: 19  KYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGLA 198
           +YPVI+ +P ++ +  NF+  DY R  T T  S+  GYL+G+  N+RGPSM T GL+G+ 
Sbjct: 12  QYPVIDRNPPLTKVVGNFSALDYLRFVTITGVSVTVGYLSGIKPNIRGPSMVTGGLIGIM 71

Query: 199 GGIMYAYQNSAFRLVGHYPNYEDLPKYK 282
           GG MYAYQNSA RL+G +PN +++ +YK
Sbjct: 72  GGFMYAYQNSAGRLMGFFPNEDEVARYK 99


>tr|A5BYX3|A5BYX3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010564 PE=4 SV=1
          Length = 116

 Score =  103 bits (256), Expect = 6e-21
 Identities = 44/88 (50%), Positives = 63/88 (71%)
 Frame = +1

Query: 19  KYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGLA 198
           +YPVI+ +P ++ +  NF+  DY R  T T  S+  GYL+G+  N+RGPSM T GL+G+ 
Sbjct: 28  QYPVIDRNPPLTKVVGNFSALDYLRFVTITGVSVTVGYLSGIKPNIRGPSMVTGGLIGIM 87

Query: 199 GGIMYAYQNSAFRLVGHYPNYEDLPKYK 282
           GG MYAYQNSA RL+G +PN +++ +YK
Sbjct: 88  GGFMYAYQNSAGRLMGFFPNEDEVARYK 115


>tr|Q6ZKB0|Q6ZKB0_ORYSJ Putative uncharacterized protein
           OJ1124_B05.23 (Putative uncharacterized protein
           OJ1111_B08.14) OS=Oryza sativa subsp. japonica
           GN=OJ1124_B05.23 PE=4 SV=1
          Length = 187

 Score = 99.8 bits (247), Expect = 6e-20
 Identities = 42/90 (46%), Positives = 64/90 (71%)
 Frame = +1

Query: 19  KYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGLA 198
           +YPV++ +P  + +  NF+  DY R++T ++ S+  GYL+G+   +RGPSM T GL+G+ 
Sbjct: 97  EYPVVDRNPPFTKVVGNFSALDYLRLSTISAVSVTVGYLSGIKPGIRGPSMVTGGLIGVM 156

Query: 199 GGIMYAYQNSAFRLVGHYPNYEDLPKYKLK 288
           GG MYAYQNSA RL+G +PN  ++ +YK K
Sbjct: 157 GGFMYAYQNSAGRLMGFFPNDSEVARYKYK 186


>tr|Q0J5I8|Q0J5I8_ORYSJ Os08g0431500 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os08g0431500 PE=4 SV=1
          Length = 138

 Score = 99.8 bits (247), Expect = 6e-20
 Identities = 42/90 (46%), Positives = 64/90 (71%)
 Frame = +1

Query: 19  KYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGLA 198
           +YPV++ +P  + +  NF+  DY R++T ++ S+  GYL+G+   +RGPSM T GL+G+ 
Sbjct: 48  EYPVVDRNPPFTKVVGNFSALDYLRLSTISAVSVTVGYLSGIKPGIRGPSMVTGGLIGVM 107

Query: 199 GGIMYAYQNSAFRLVGHYPNYEDLPKYKLK 288
           GG MYAYQNSA RL+G +PN  ++ +YK K
Sbjct: 108 GGFMYAYQNSAGRLMGFFPNDSEVARYKYK 137


>tr|A3BTD8|A3BTD8_ORYSJ cDNA clone:J023121F15, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OsJ_026310 PE=4 SV=1
          Length = 102

 Score = 99.8 bits (247), Expect = 6e-20
 Identities = 42/90 (46%), Positives = 64/90 (71%)
 Frame = +1

Query: 19  KYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGLA 198
           +YPV++ +P  + +  NF+  DY R++T ++ S+  GYL+G+   +RGPSM T GL+G+ 
Sbjct: 12  EYPVVDRNPPFTKVVGNFSALDYLRLSTISAVSVTVGYLSGIKPGIRGPSMVTGGLIGVM 71

Query: 199 GGIMYAYQNSAFRLVGHYPNYEDLPKYKLK 288
           GG MYAYQNSA RL+G +PN  ++ +YK K
Sbjct: 72  GGFMYAYQNSAGRLMGFFPNDSEVARYKYK 101


>tr|A2YVH0|A2YVH0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29327 PE=4 SV=1
          Length = 102

 Score = 99.8 bits (247), Expect = 6e-20
 Identities = 42/90 (46%), Positives = 64/90 (71%)
 Frame = +1

Query: 19  KYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGLA 198
           +YPV++ +P  + +  NF+  DY R++T ++ S+  GYL+G+   +RGPSM T GL+G+ 
Sbjct: 12  EYPVVDRNPPFTKVVGNFSALDYLRLSTISAVSVTVGYLSGIKPGIRGPSMVTGGLIGVM 71

Query: 199 GGIMYAYQNSAFRLVGHYPNYEDLPKYKLK 288
           GG MYAYQNSA RL+G +PN  ++ +YK K
Sbjct: 72  GGFMYAYQNSAGRLMGFFPNDSEVARYKYK 101


>tr|Q84W12|Q84W12_ARATH At4g16450 (Putative uncharacterized protein
           At4g16450) OS=Arabidopsis thaliana GN=At4g16450 PE=4
           SV=1
          Length = 106

 Score = 99.4 bits (246), Expect = 8e-20
 Identities = 43/89 (48%), Positives = 63/89 (70%)
 Frame = +1

Query: 16  AKYPVINSDPSVSMIYSNFNTTDYCRITTFTSASLVYGYLAGVSWNVRGPSMYTAGLLGL 195
           A+YPV++ +P+ + +  NF+T DY R +T T  S+  GYL+G+   ++GPSM T GL+GL
Sbjct: 11  AQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGPSMVTGGLIGL 70

Query: 196 AGGIMYAYQNSAFRLVGHYPNYEDLPKYK 282
            GG MYAYQNSA RL+G +PN  ++  Y+
Sbjct: 71  MGGFMYAYQNSAGRLMGFFPNDGEVASYQ 99