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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921511
Clone id YMU001_000150_G09
Library
Length 486
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGAGGGTATGGCAGGGCAAGAGCTTGGTGATCAGGTTGTATTCAAGGGCTCATAATCAAG
AAGAGTGTGGAAACAGGTCTCGTTTGGGTCAGCTTGCACATGCAGCTCGAATTGTTGTCA
GAGATCACTGAAAAGAGGGATTAAAGCTTAAAGAGAGAAAAAGTATCTGTGAAGGCTTCT
CCAGATGCGTATTTCTTGCAGTGTTCCACCTCAAGCTGGATCTTCAACAAGCATAACGTG
TCTCCCTGTTGTTTCGTCCACCATATGTGACAACTCAAGTAGGTGAATCTGCATTCATCT
TACAAGGTTCCACCCAATTCTTCTGATTCTCATCGAACATTCTGTATGGTGAAGAGTTTT
TTTATGCATTTGGCCTGAATGCTGTTGTTACAGTTGCCTTTTGTACCACATCATTTTTCC
GCTTGATCGTTGTTGTTGTAACAGTAAGAAATGGTTTATAGTTGCTTTTTATACTAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id B0JR89
Definition sp|B0JR89|Y4136_MICAN UPF0182 protein MAE_41360 OS=Microcystis aeruginosa (strain NIES-843)
Align length 80
Score (bit) 30.8
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921511|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_G09.
         (475 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0JR89|Y4136_MICAN UPF0182 protein MAE_41360 OS=Microcystis a...    31   3.2  
sp|Q17V90|SYS_HELAH Seryl-tRNA synthetase OS=Helicobacter acinon...    30   4.2  
sp|B1IUF9|THIK_ECOLC Thiamine kinase OS=Escherichia coli (strain...    30   4.2  
sp|A7ZZ64|THIK_ECOHS Thiamine kinase OS=Escherichia coli O9:H4 (...    30   4.2  
sp|P56458|SYS_HELPY Seryl-tRNA synthetase OS=Helicobacter pylori...    30   5.4  
sp|Q9ZJD9|SYS_HELPJ Seryl-tRNA synthetase OS=Helicobacter pylori...    30   5.4  
sp|Q1CRC2|SYS_HELPH Seryl-tRNA synthetase OS=Helicobacter pylori...    30   5.4  
sp|Q8FIN3|THIK_ECOL6 Thiamine kinase OS=Escherichia coli O6 GN=t...    29   9.4  
sp|Q0TIW8|THIK_ECOL5 Thiamine kinase OS=Escherichia coli O6:K15:...    29   9.4  

>sp|B0JR89|Y4136_MICAN UPF0182 protein MAE_41360 OS=Microcystis
            aeruginosa (strain NIES-843) GN=MAE_41360 PE=3 SV=1
          Length = 959

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = +3

Query: 243  SLLFRPPYVTTQVG----ESAFILQGSTQFF*FSSNILYGEEFFYAFGLNAVVTVAFCTT 410
            +L+ + P ++ Q+     + + +LQG         ++LY E  +     N+V T+A  T 
Sbjct: 875  ALINQDPDISQQISLWNRDGSKVLQGHLLIIPIEQSLLYVEPLYLVADQNSVPTIARVTV 934

Query: 411  SFFRLIVVVVTVRNGL*LLF 470
            ++   IV+  T++  L  LF
Sbjct: 935  AYQNKIVMEPTLKEALEKLF 954


>sp|Q17V90|SYS_HELAH Seryl-tRNA synthetase OS=Helicobacter
           acinonychis (strain Sheeba) GN=serS PE=3 SV=1
          Length = 415

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 132 KEGLKL-KERKSICEGFSRCVFLAVFHLKLDLQQA*RVSLLFRPPYVTTQV 281
           + G+KL K R S+  GF   V+ A+ HL LD  +     +++ P  V  ++
Sbjct: 154 ESGVKLAKSRFSVIRGFGAKVYRALIHLMLDFNEKNGFEIIYTPALVNEKM 204


>sp|B1IUF9|THIK_ECOLC Thiamine kinase OS=Escherichia coli (strain
           ATCC 8739 / DSM 1576 / Crooks) GN=thiK PE=3 SV=1
          Length = 274

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -2

Query: 369 MHKKTLHHTECSMRIRRIGWNLVR*MQIHLLELSHMVDETTGRHVMLVEDPA*GGTLQEI 190
           +H   L H+   +++  I W       I  LEL+ +  E T +H+ LV D A    +   
Sbjct: 170 VHAGNLVHSASGLKL--IDWEYAGDGDI-ALELAAVWVENTEQHLQLVNDYATRAKIYPA 226

Query: 189 RIWRSLHRYF 160
           ++WR + R+F
Sbjct: 227 QLWRQVRRWF 236


>sp|A7ZZ64|THIK_ECOHS Thiamine kinase OS=Escherichia coli O9:H4
           (strain HS) GN=thiK PE=3 SV=1
          Length = 274

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -2

Query: 369 MHKKTLHHTECSMRIRRIGWNLVR*MQIHLLELSHMVDETTGRHVMLVEDPA*GGTLQEI 190
           +H   L H+   +++  I W       I  LEL+ +  E T +H+ LV D A    +   
Sbjct: 170 VHAGNLVHSASGLKL--IDWEYAGDGDI-ALELAAVWVENTEQHLQLVNDYATRAKIYPA 226

Query: 189 RIWRSLHRYF 160
           ++WR + R+F
Sbjct: 227 QLWRQVRRWF 236


>sp|P56458|SYS_HELPY Seryl-tRNA synthetase OS=Helicobacter pylori
           GN=serS PE=3 SV=1
          Length = 415

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 132 KEGLKL-KERKSICEGFSRCVFLAVFHLKLDLQQA*RVSLLFRPPYVTTQV 281
           + G+KL K R S+  GF   ++ A+ HL LD  +     +++ P  V  ++
Sbjct: 154 ESGVKLAKSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKM 204


>sp|Q9ZJD9|SYS_HELPJ Seryl-tRNA synthetase OS=Helicobacter pylori
           J99 GN=serS PE=3 SV=1
          Length = 415

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 132 KEGLKL-KERKSICEGFSRCVFLAVFHLKLDLQQA*RVSLLFRPPYVTTQV 281
           + G+KL K R S+  GF   ++ A+ HL LD  +     +++ P  V  ++
Sbjct: 154 ESGVKLAKSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKM 204


>sp|Q1CRC2|SYS_HELPH Seryl-tRNA synthetase OS=Helicobacter pylori
           (strain HPAG1) GN=serS PE=3 SV=1
          Length = 415

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 132 KEGLKL-KERKSICEGFSRCVFLAVFHLKLDLQQA*RVSLLFRPPYVTTQV 281
           + G+KL K R S+  GF   ++ A+ HL LD  +     +++ P  V  ++
Sbjct: 154 ESGVKLAKSRFSVIRGFGAKIYRALIHLMLDFNEKNGFEIIYTPALVNEKM 204


>sp|Q8FIN3|THIK_ECOL6 Thiamine kinase OS=Escherichia coli O6 GN=thiK
           PE=3 SV=1
          Length = 274

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -2

Query: 369 MHKKTLHHTECSMRIRRIGWNLVR*MQIHLLELSHMVDETTGRHVMLVEDPA*GGTLQEI 190
           +H   L H+   +++  I W       I  LEL+ +  E T +H  LV D A    +   
Sbjct: 170 VHAGNLVHSASGLKL--IDWEYAGDGDI-ALELAAVWVENTDQHRQLVNDYATRAKIYPA 226

Query: 189 RIWRSLHRYF 160
           ++WR + R+F
Sbjct: 227 QLWRQVRRWF 236


>sp|Q0TIW8|THIK_ECOL5 Thiamine kinase OS=Escherichia coli O6:K15:H31
           (strain 536 / UPEC) GN=thiK PE=3 SV=1
          Length = 274

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -2

Query: 369 MHKKTLHHTECSMRIRRIGWNLVR*MQIHLLELSHMVDETTGRHVMLVEDPA*GGTLQEI 190
           +H   L H+   +++  I W       I  LEL+ +  E T +H  LV D A    +   
Sbjct: 170 VHAGNLVHSASGLKL--IDWEYAGDGDI-ALELAAVWVENTDQHRQLVNDYATRAKIYPA 226

Query: 189 RIWRSLHRYF 160
           ++WR + R+F
Sbjct: 227 QLWRQVRRWF 236
tr_hit_id Q95ZG6
Definition tr|Q95ZG6|Q95ZG6_DICDI Putative RNA dependent RNA polymerase (Fragment) OS=Dictyostelium discoideum
Align length 54
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921511|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_G09.
         (475 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q95ZG6|Q95ZG6_DICDI Putative RNA dependent RNA polymerase (Fr...    34   4.2  
tr|Q54EH7|Q54EH7_DICDI RNA-directed RNA polymerase OS=Dictyostel...    34   4.2  
tr|Q2S5E5|Q2S5E5_SALRD Putative uncharacterized protein OS=Salin...    33   9.2  
tr|Q6Y660|Q6Y660_BURPS BpaA OS=Burkholderia pseudomallei GN=bpaA...    33   9.3  
tr|A4LF27|A4LF27_BURPS Putative uncharacterized protein OS=Burkh...    33   9.3  
tr|Q95ZG7|Q95ZG7_DICDI Putative RNA dependent RNA polymerase (Fr...    33   9.3  
tr|Q54H25|Q54H25_DICDI RNA-directed RNA polymerase OS=Dictyostel...    33   9.3  

>tr|Q95ZG6|Q95ZG6_DICDI Putative RNA dependent RNA polymerase
           (Fragment) OS=Dictyostelium discoideum GN=RrpB PE=4 SV=1
          Length = 1964

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/54 (29%), Positives = 35/54 (64%)
 Frame = +3

Query: 183 RCVFLAVFHLKLDLQQA*RVSLLFRPPYVTTQVGESAFILQGSTQFF*FSSNIL 344
           +CV L+++H+++D++   R  LLF+ P +  QV + +  ++G  ++   SS+I+
Sbjct: 378 KCVILSIYHIEIDIETF-RELLLFQLPDIVNQVDQVSIRMEGDDEY--LSSSII 428


>tr|Q54EH7|Q54EH7_DICDI RNA-directed RNA polymerase OS=Dictyostelium
           discoideum GN=rrpB PE=4 SV=1
          Length = 2403

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/54 (29%), Positives = 35/54 (64%)
 Frame = +3

Query: 183 RCVFLAVFHLKLDLQQA*RVSLLFRPPYVTTQVGESAFILQGSTQFF*FSSNIL 344
           +CV L+++H+++D++   R  LLF+ P +  QV + +  ++G  ++   SS+I+
Sbjct: 821 KCVILSIYHIEIDIETF-RELLLFQLPDIVNQVDQVSIRMEGDDEY--LSSSII 871


>tr|Q2S5E5|Q2S5E5_SALRD Putative uncharacterized protein
           OS=Salinibacter ruber (strain DSM 13855) GN=SRU_0441
           PE=4 SV=1
          Length = 81

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +2

Query: 23  LGDQVVFKGS*SRRVWKQVSFGSACTCSSNC----CQRSLKRG 139
           LG  +V +G+ S R W ++  G  C+CSS+C    CQR  +RG
Sbjct: 33  LGIGLVGQGAYSGR-WGRLGIGGHCSCSSHCGLERCQRGRRRG 74


>tr|Q6Y660|Q6Y660_BURPS BpaA OS=Burkholderia pseudomallei GN=bpaA PE=4
            SV=1
          Length = 5431

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 255  RPPYVTTQVGESAFILQGSTQFF*FSSNILYGEEFFYAFGLNAVVTVAFCTTSFFRLIVV 434
            R  Y T   G +A+  QG+ QF   +  +L G + + + G N     A    + F   VV
Sbjct: 883  RGGYATIDGGGNAYANQGAIQFAGTAPTVLTGWDVYLSSGCNTAANCASSDRTVFNPSVV 942

Query: 435  VVTVRNG 455
            +V   NG
Sbjct: 943  LVQPNNG 949


>tr|A4LF27|A4LF27_BURPS Putative uncharacterized protein
           OS=Burkholderia pseudomallei 305 GN=BURPS305_5906 PE=4
           SV=1
          Length = 5235

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +3

Query: 255 RPPYVTTQVGESAFILQGSTQFF*FSSNILYGEEFFYAFGLNAVVTVAFCTTSFFRLIVV 434
           R  Y T   G +A+  QG+ QF   +  +L G + + + G N     A    + F   VV
Sbjct: 687 RGGYATIDGGGNAYANQGAIQFAGTAPTVLTGWDVYLSSGCNTAANCASSDRTVFNPSVV 746

Query: 435 VVTVRNG 455
           +V   NG
Sbjct: 747 LVQPNNG 753


>tr|Q95ZG7|Q95ZG7_DICDI Putative RNA dependent RNA polymerase
           (Fragment) OS=Dictyostelium discoideum GN=RrpA PE=4 SV=1
          Length = 1883

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/46 (28%), Positives = 30/46 (65%)
 Frame = +3

Query: 183 RCVFLAVFHLKLDLQQA*RVSLLFRPPYVTTQVGESAFILQGSTQF 320
           +CV L+++H+++D++   R  LLF+ P +  QV + +  ++G  ++
Sbjct: 579 KCVILSIYHIEIDIETF-RELLLFQLPDIINQVDQVSIRMEGDDEY 623


>tr|Q54H25|Q54H25_DICDI RNA-directed RNA polymerase OS=Dictyostelium
           discoideum GN=rrpA PE=4 SV=1
          Length = 2417

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/46 (28%), Positives = 30/46 (65%)
 Frame = +3

Query: 183 RCVFLAVFHLKLDLQQA*RVSLLFRPPYVTTQVGESAFILQGSTQF 320
           +CV L+++H+++D++   R  LLF+ P +  QV + +  ++G  ++
Sbjct: 832 KCVILSIYHIEIDIETF-RELLLFQLPDIINQVDQVSIRMEGDDEY 876