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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921519
Clone id YMU001_000150_H08
Library
Length 429
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTGAAGTGGACATATTTTGATTATGAAGTCATGGAATTTTGGGAGAGTGTTAAGGGGAC
ACTCCAATATGTGGAGGTGGACTCATCTGCATACCCGAGACAGGGGTATCACTACAGTCA
CTGTGATGGGCTTCGTGACGAGTCTGAGGTTCGAGGAGCATGCCGGAAAACCATATTTGA
TTGTGTCAACAAAGCTGCAGGCAAACTAAAATTCAATGCAATAATTAATGCAGCTTCATC
AAGCAAAGTTACACGATCAGCAGTGGACTACGCAGCATTCGTTCTGAAGAAAAAGAAACG
GAACCATTCACAAGGACAATCCGAAGATGAGTTTGAAGAGGAGAGCAGTTCTTCTGATGA
GTCTTTTGAGGATGAGGAAGAAGTGGAGGCAGATGAAGAGGAATAATGATTGATTGATCC
CCGCCCTTT
■■Homology search results ■■ -
sp_hit_id P83479
Definition sp|P83479|HBAC_CONCO Hemoglobin cathodic subunit alpha OS=Conger conger
Align length 92
Score (bit) 30.8
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921519|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_H08.
         (429 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P83479|HBAC_CONCO Hemoglobin cathodic subunit alpha OS=Conger...    31   2.4  
sp|P44836|HGP3_HAEIN Probable hemoglobin and hemoglobin-haptoglo...    30   3.1  
sp|Q70XV6|YCF1_AMBTC Putative membrane protein ycf1 OS=Amborella...    30   4.1  
sp|A1BHN5|MUTS_CHLPD DNA mismatch repair protein mutS OS=Chlorob...    30   5.3  
sp|P44795|HGP1_HAEIN Probable hemoglobin and hemoglobin-haptoglo...    30   5.3  
sp|O93452|DMS2_PACDA Dermaseptin PD-2-2 OS=Pachymedusa dacnicolo...    29   7.0  
sp|Q53199|DHE3_RHISN Probable glutamate dehydrogenase OS=Rhizobi...    29   9.1  

>sp|P83479|HBAC_CONCO Hemoglobin cathodic subunit alpha OS=Conger
           conger PE=1 SV=2
          Length = 143

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
 Frame = +2

Query: 29  VMEFWESVKGTLQYVEVDSSA-----YPRQGYHYSHCDGLRDESEVRGACRKTIFDCVNK 193
           V  FW  VKG    +  ++       YP+   +++H       SE     +KTI   V  
Sbjct: 11  VKTFWGKVKGKADAMGAEALGRMLVVYPQTKTYFAHWSDQSPGSEPVKHGKKTIMGAVGD 70

Query: 194 AAGKL-KFNAIINAASSSKVTRSAVDYAAFVL 286
           A GK+      ++A S    T+ A+D   F L
Sbjct: 71  AVGKIDNLLGGLSALSEVHATKLAIDPGNFKL 102


>sp|P44836|HGP3_HAEIN Probable hemoglobin and
           hemoglobin-haptoglobin-binding protein 3 OS=Haemophilus
           influenzae GN=HI0712 PE=1 SV=1
          Length = 1084

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 14/72 (19%), Positives = 35/72 (48%)
 Frame = +2

Query: 2   LKWTYFDYEVMEFWESVKGTLQYVEVDSSAYPRQGYHYSHCDGLRDESEVRGACRKTIFD 181
           ++++Y ++    FW+ +K +    ++ + A   +  H S C+G+ +   +       ++ 
Sbjct: 367 IQFSYENFSQTPFWDHIKLSYSSQKITNKARSDEYCHQSTCNGVSNPQGLHLVEEGGVYK 426

Query: 182 CVNKAAGKLKFN 217
            V+K   KL +N
Sbjct: 427 IVDKNGDKLTYN 438


>sp|Q70XV6|YCF1_AMBTC Putative membrane protein ycf1 OS=Amborella
            trichopoda GN=ycf1 PE=3 SV=2
          Length = 1794

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 306  IHKDNPKMSLKRRAVLLMSLLRMRKKW 386
            IHKD P   LK+  V  M  LR+ +KW
Sbjct: 1606 IHKDLPLTKLKKGGVFTMEPLRLSRKW 1632


>sp|A1BHN5|MUTS_CHLPD DNA mismatch repair protein mutS OS=Chlorobium
           phaeobacteroides (strain DSM 266) GN=mutS PE=3 SV=1
          Length = 872

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +2

Query: 98  RQGYHYSHCDGLRDESEVRGACRKTIFDCVNKA---AGKL---KFNAIINAASSSKVTRS 259
           ++GY  + CD + D SE +G  R+ I D V      + K+   + N  + A +  K  R 
Sbjct: 83  KKGYKVAVCDQVEDPSEAKGIVRREITDIVTPGITYSDKILDDRHNNYLCALALLKEGRR 142

Query: 260 AVDYAAFV 283
            V  AAF+
Sbjct: 143 VVAGAAFI 150


>sp|P44795|HGP1_HAEIN Probable hemoglobin and
           hemoglobin-haptoglobin-binding protein 1 OS=Haemophilus
           influenzae GN=HI0635 PE=1 SV=2
          Length = 1063

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/74 (18%), Positives = 36/74 (48%)
 Frame = +2

Query: 2   LKWTYFDYEVMEFWESVKGTLQYVEVDSSAYPRQGYHYSHCDGLRDESEVRGACRKTIFD 181
           ++++Y ++    FW+ +K +    ++ + A   +  H S C+G+ +   +     K ++ 
Sbjct: 347 IQFSYENFSQTPFWDHIKLSYSSQKITNKARSDEYCHQSTCNGVSNPQGLHLVEEKGVYK 406

Query: 182 CVNKAAGKLKFNAI 223
             +K  G+L+   I
Sbjct: 407 IKDKYGGELESKEI 420


>sp|O93452|DMS2_PACDA Dermaseptin PD-2-2 OS=Pachymedusa dacnicolor
           PE=2 SV=1
          Length = 75

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 137 DESEVRGACRKTIFDCVNKAAGKLKFNAIINAASSSK 247
           ++SE + A  KT+   V K AGK   NA+ N A+ ++
Sbjct: 38  EQSEEKRALWKTLLKKVGKVAGKAVLNAVTNMANQNE 74


>sp|Q53199|DHE3_RHISN Probable glutamate dehydrogenase OS=Rhizobium
           sp. (strain NGR234) GN=y4uF PE=3 SV=1
          Length = 443

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 359 HQKNCSPLQTHLRIVLVNGSVSFSSERMLRS 267
           H +N   ++ HL +   NG V+F ++ +LRS
Sbjct: 293 HAENAERMKAHLVVEAANGPVTFEADEILRS 323
tr_hit_id B2EDV3
Definition tr|B2EDV3|B2EDV3_9BACT Putative uncharacterized protein OS=bacterium Ellin514
Align length 34
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921519|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_H08.
         (429 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2EDV3|B2EDV3_9BACT Putative uncharacterized protein OS=bacte...    33   7.2  
tr|B3MM52|B3MM52_DROAN GF14826 OS=Drosophila ananassae GN=GF1482...    33   7.2  
tr|B0DSP5|B0DSP5_LACBS Putative uncharacterized protein OS=Lacca...    33   9.4  

>tr|B2EDV3|B2EDV3_9BACT Putative uncharacterized protein
           OS=bacterium Ellin514 GN=CflavDRAFT_0420 PE=3 SV=1
          Length = 589

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 8   WTYFDYEVMEFWESVKGTLQYVEVDSSAYPRQGY 109
           WTYF Y  M       G  +++EVD+S+YP Q Y
Sbjct: 555 WTYFTYVFM----GSNGQSEFIEVDASSYPAQYY 584


>tr|B3MM52|B3MM52_DROAN GF14826 OS=Drosophila ananassae GN=GF14826
            PE=4 SV=1
          Length = 1921

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +2

Query: 50   VKGTLQYVEVDSSAYPRQ-GYHYSHCDGLRDESEVR-----GACRKTIFDCVNKAAGKLK 211
            ++ T ++VE   +  PRQ  + Y HC+ LRD S V        C  TI   V +  G  +
Sbjct: 1078 IRVTAKFVEAQLNWSPRQLNFKYKHCEPLRDRSYVETPLLINPCSVTIDQVVLQVTGPFR 1137

Query: 212  FNAIINAASSSKVT 253
               +   +   ++T
Sbjct: 1138 IKELYEDSFEKEIT 1151


>tr|B0DSP5|B0DSP5_LACBS Putative uncharacterized protein OS=Laccaria
            bicolor (strain S238N-H82) GN=LACBIDRAFT_309621 PE=4 SV=1
          Length = 1493

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 149  PQTRHEAHHSDCSDTPVSGMQMSPPPHIGVSP*HSP 42
            PQ  H     D S  PVS    +PPPH  + P  +P
Sbjct: 1078 PQRSHVLRDEDASSAPVSPAVSTPPPHRAIPPPRAP 1113