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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921520
Clone id YMU001_000150_H09
Library
Length 504
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000150_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCGGCCGCGAATGAGAGAGAGAGAGAGAGAAAGAGCACAACTCTAATAGGACAACCTACG
AAAAAAGTAAAGATTAAGAAACCCCATGTCATGCTCTCAGCAGAAAAGACTCCAGAACAT
TAACACGCTTCTAGAGCATACAAAAGAACACTGAGCACAAGCATTCTCAAAGGTCTCGTG
GATAAAAATTATTTAAATCTCCGCAGGCCATCCCACACCTTTTATGGAAGGCATGGCATG
CATAGAATGTGCAAGCTTGTGCCCTATGCTCTTAAGAGGCAACGTCGTCAAATATTATGT
CCTTAAAGTTGCATACACCCAAAGCACAAGAGTTTCCATCACAGTCCCGTGGGACACAAA
CTGGGAACGGGGAACGGGGAACAGAGACGAGCCTGTATTCCCATTAACCCTATAAATATA
GGTATCAAGTAGAACAGAAACCAAACTAGGGTGGAGGGGGACGACGACAAAAATTGGCTA
TTCCCTGTGACTATGGTTCCCAGC
■■Homology search results ■■ -
sp_hit_id P24043
Definition sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens
Align length 86
Score (bit) 30.8
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921520|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_H09.
         (491 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN...    31   3.5  
sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 OS=...    30   7.8  

>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens
            GN=LAMA2 PE=1 SV=4
          Length = 3122

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
 Frame = -3

Query: 384  YRLVSVP--RSPFPV---CVPRDCDGNSCALGVCNFKDIIFDDVAS*EHRAQACTFYACH 220
            YRL S P  R+P P    CVP  C+G+S    +C+ +  I           Q C  +   
Sbjct: 1399 YRLRSQPGGRTPGPTLGTCVPCQCNGHS---SLCDPETSI----------CQNCQHHTAG 1445

Query: 219  AFHKRCGMACGDLNNFYPRDL*ECLC 142
             F +RC +    +    P D  +C C
Sbjct: 1446 DFCERCALGYYGIVKGLPNDCQQCAC 1471


>sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1
           OS=Rattus norvegicus GN=Notch1 PE=1 SV=2
          Length = 2531

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -3

Query: 333 DCDGNSCALGVCNFKDIIFDDVAS*EHRAQAC--TFYACHAFHKRCGMACGDLNNFYPRD 160
           +CD + C +G+C      F  +    +    C      CH+   R G  C D +N+Y   
Sbjct: 569 ECDPDPCHIGLCKDGVATFTCLCQPGYTGHHCETNINECHSQPCRHGGTCQDRDNYY--- 625

Query: 159 L*ECLC 142
              CLC
Sbjct: 626 --LCLC 629
tr_hit_id B5WA73
Definition tr|B5WA73|B5WA73_SPIMA Putative uncharacterized protein OS=Arthrospira maxima CS-328
Align length 70
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921520|Adiantum capillus-veneris mRNA, clone:
YMU001_000150_H09.
         (491 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5WA73|B5WA73_SPIMA Putative uncharacterized protein OS=Arthr...    33   9.3  
tr|Q7YWV9|Q7YWV9_CAEEL Putative uncharacterized protein OS=Caeno...    33   9.3  
tr|B6MXV1|B6MXV1_BRAFL Putative uncharacterized protein OS=Branc...    33   9.3  

>tr|B5WA73|B5WA73_SPIMA Putative uncharacterized protein
           OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_5673 PE=3 SV=1
          Length = 476

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = +3

Query: 3   RERERKSTTLIGQPTKKVKIKKPHVMLSAEKTPEH*HASRAYKRTLSTSILKGLVDKNYL 182
           R R  K T  + Q  + +K KKPH ++S    P H  A   + +   T +  GLVD+  +
Sbjct: 321 RWRAHKITAFMRQLHQAIKAKKPHSIISVSPNPYH-IAYNGHLQDWVTWVRDGLVDELVV 379

Query: 183 NLRRPSHTFY 212
            + R    F+
Sbjct: 380 QVYRDELDFF 389


>tr|Q7YWV9|Q7YWV9_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=T11F9.19 PE=4 SV=1
          Length = 227

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 150 ILKGLVDKNYLNLRRPSHTFYGRHGMHRMCKLVPYALKRQRR 275
           +LK L+   Y N +RPS+  +G    H  C L  Y  +R +R
Sbjct: 115 VLKALIQIKYENKKRPSNITFGCQWYHECCDLGCYNARRMQR 156


>tr|B6MXV1|B6MXV1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_88116 PE=4 SV=1
          Length = 6914

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
 Frame = -3

Query: 345 CVPRDCDGNS-CALGVCNFK-----------DIIFDDVAS*EHRAQACTFYACHAFHKRC 202
           C+PRDC+G   C  GVC+ +           D I  D     +   ACT   C  FH   
Sbjct: 193 CIPRDCNGRGVCTGGVCSCESGWRGGACEEGDCIPPDC----NGNGACTEGTCRCFHGWQ 248

Query: 201 GMACGDLNNFYPRD 160
           G+AC       P D
Sbjct: 249 GVACDTQYRRCPSD 262