BP921538
Clone id YMU001_000151_B10
Library
Length 318
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GTCTAGGCTATGGTACTGAGAAGCAAGAGAAGCTGGATGAGAGAAGTAGGCGAGCAGACA
ACATGAGAGCATAATGAGAGGCAAGACAGTGGTCGATTGGAGCGGTTAGACAGTCAAGGC
AGAAGAGAACTTGCTAATTTTGAGAATAAGGATGAATGCAGAGGATCTGAGCATTGGCAT
CATTAGGAGAAAGGGGAGTCAGATAGACCAGACGTGGACAAGCAAGAGAGCTGGAGACGA
CCTGTGGAGGTGCCTCAAAGTCCTATGTNTGGAGGAGAAATTCCCTCTGGGGTATTTGTA
CTAGCTGGTACCTTCACT
■■Homology search results ■■ -
sp_hit_id Q96PN7
Definition sp|Q96PN7|TREF1_HUMAN Transcriptional-regulating factor 1 OS=Homo sapiens
Align length 73
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921538|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_B10.
(318 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q96PN7|TREF1_HUMAN Transcriptional-regulating factor 1 OS=Hom... 31 1.7
sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoid... 30 4.8
sp|Q7MYM6|WECG_PHOLL Probable UDP-N-acetyl-D-mannosaminuronic ac... 29 6.3
sp|P34594|YOD2_CAEEL Uncharacterized protein ZC262.2 OS=Caenorha... 29 8.2

>sp|Q96PN7|TREF1_HUMAN Transcriptional-regulating factor 1 OS=Homo
sapiens GN=TRERF1 PE=1 SV=1
Length = 1200

Score = 31.2 bits (69), Expect = 1.7
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +1

Query: 94 RLERLDSQGRRELANFENKDECRGSEHWHH*EKGESDRPDVDKQESWRRPVEVPQSPMXG 273
++ RL + R LA E D+C SE E+ E + P+ D++ + EVP+SP
Sbjct: 933 KIMRLGRKHRTRLA--EIIDDCVTSEEEEELEEEEEEDPEEDRKSTKEEESEVPKSPE-- 988

Query: 274 GEIPSGVFVLAGT 312
P V VLA T
Sbjct: 989 ---PPPVPVLAPT 998


>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum
GN=mybX PE=3 SV=1
Length = 1620

Score = 29.6 bits (65), Expect = 4.8
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1

Query: 43 EVGEQTT*EHNERQDSGRLERLDSQGRRELANFENKDECRGSEHWHH*EKGESDRPDVDK 222
E E+ E E+++ RLER + Q + E E K+E E EK E + + +
Sbjct: 468 EKQEKEEKERLEKEEKERLEREEKQEKEEKEEKEEKEENEEKEEKEEKEKEEKEEKEKQE 527

Query: 223 QE 228
+E
Sbjct: 528 KE 529


>sp|Q7MYM6|WECG_PHOLL Probable UDP-N-acetyl-D-mannosaminuronic acid
transferase OS=Photorhabdus luminescens subsp. laumondii
GN=wecG PE=3 SV=1
Length = 245

Score = 29.3 bits (64), Expect = 6.3
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +2

Query: 59 QHESIMRGKTVVDWSG*TVKAEENLLILRIRMNAEDL---SIGIIRRKGSQIDQTWTSKR 229
Q E + G V + + AEE+ + + +AE L I I+R + T S+
Sbjct: 31 QREQVKTGTMVAINAEKVLTAEEDTALSTLLSDAEYLYADGISIVRAIRRKYPDTEVSRV 90

Query: 230 AGDDLWRCLKVLCXEEKFPL 289
AG DLW + +E P+
Sbjct: 91 AGADLWEAIMERAGKEGTPI 110


>sp|P34594|YOD2_CAEEL Uncharacterized protein ZC262.2
OS=Caenorhabditis elegans GN=ZC262.2 PE=2 SV=1
Length = 233

Score = 28.9 bits (63), Expect = 8.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1

Query: 70 HNERQDSGRLERLDSQGRRELANFENKDECRGSEHWHH*EKGESDR 207
H E+ +S R + D + RR+ + +D+ RG W +DR
Sbjct: 55 HPEKNESRRHDDRDQERRRDYGRNDRRDDRRGDGSWKTDRNDRNDR 100


tr_hit_id A9T954
Definition tr|A9T954|A9T954_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921538|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_B10.
(318 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9T954|A9T954_PHYPA Predicted protein OS=Physcomitrella paten... 35 1.9
tr|B6HMR4|B6HMR4_PENCH Pc21g08960 protein OS=Penicillium chrysog... 33 5.4
tr|A7PYC0|A7PYC0_VITVI Chromosome chr15 scaffold_37, whole genom... 33 9.3

>tr|A9T954|A9T954_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_168735 PE=4 SV=1
Length = 1010

Score = 35.0 bits (79), Expect = 1.9
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1

Query: 76 ERQDSGRLERLDSQGRR-ELANFENKDECRGSEHWHH*EK----GESDRPDVDKQESWRR 240
ERQD R+ RR ++ + +D + + E G+ + D+DKQ+SWRR
Sbjct: 788 ERQDGSRVPGDSKDYRRGDIDKHDVRDRFESNRSYDRQESRNRDGQDSQRDIDKQDSWRR 847

Query: 241 PVEVP 255
P P
Sbjct: 848 PASPP 852


>tr|B6HMR4|B6HMR4_PENCH Pc21g08960 protein OS=Penicillium
chrysogenum Wisconsin 54-1255 GN=Pc21g08960 PE=4 SV=1
Length = 1129

Score = 33.5 bits (75), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1

Query: 193 GESDRPDVDKQESWRRPVEVPQSPMXGGEIP 285
G+S+RPD Q WR P +P P G P
Sbjct: 3 GQSNRPDPPSQPEWRLPTRIPSQPSQPGPPP 33


>tr|A7PYC0|A7PYC0_VITVI Chromosome chr15 scaffold_37, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00026380001
PE=4 SV=1
Length = 250

Score = 32.7 bits (73), Expect = 9.3
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3

Query: 157 IHPYSQ-N*QVLFCLDCLTAPIDHCLASH 74
IH Y++ N + +FCLDC T+ HCL+ H
Sbjct: 25 IHEYAKKNEKNIFCLDCCTSICPHCLSPH 53