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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921539
Clone id YMU001_000151_B11
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATCAACTACTGCAAACCCTTGAGAAGATAGTACAACTTCATGGGCACGTTGGCTGATAT
GCATCAACCTCCAAAACTGACAGCTTTTTTGGCTCATCTGGCGTCACTCAGAATCCTATC
TGTCCGCTTCTGAAAAATATCAATAGTCCAGCTCACAGGAGGTATCACGTACACAAGACA
GCACAATGGCACCATTCCAATGATTGCCTCCCATTCACTCCTGAAGGAAAGAAGCGAAGC
CCTACATCCTCTATCCATCGGTCCATGTCCAAGGCATGTAAATCCTTTACGGTTCCAACT
TTTGTTGACACAAACCCACATTCAATCATGCAATGATGATGATGCTCTATGAAATCTCCG
GGGAGTTCTGCCACCTGACCCTGAGCTCTCCCGCTGTCCCCCATCATTTTTATCCCAACT
TTTAACCCAACTCTTCCTCCCAGACCCTGTATCCTCAGTTGCTCCATTTGACGGCCAAGA
ACCAACATCCTTCAATTGAGTGTCAGGAGACTC
■■Homology search results ■■ -
sp_hit_id P36417
Definition sp|P36417|GBF_DICDI G-box-binding factor OS=Dictyostelium discoideum
Align length 108
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921539|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_B11.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36417|GBF_DICDI G-box-binding factor OS=Dictyostelium discoi...    33   1.0  
sp|Q9H329|E41LB_HUMAN Band 4.1-like protein 4B OS=Homo sapiens G...    32   1.3  
sp|Q9Z6M0|AROA_CHLPN 3-phosphoshikimate 1-carboxyvinyltransferas...    32   1.8  
sp|Q66KJ5|CG041_XENTR UPF0452 protein C7orf41 homolog OS=Xenopus...    30   6.7  
sp|Q7ZX36|CG041_XENLA UPF0452 protein C7orf41 homolog OS=Xenopus...    30   6.7  
sp|Q8LF65|ATL4G_ARATH RING-H2 finger protein ATL4G OS=Arabidopsi...    30   8.7  

>sp|P36417|GBF_DICDI G-box-binding factor OS=Dictyostelium
           discoideum GN=gbfA PE=1 SV=2
          Length = 708

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 24/108 (22%)
 Frame = +1

Query: 1   HQLLQTLEKIVQLHGHVG*YASTSKTDSFF-----------GSSGVTQN----------- 114
           HQLLQ   +  QL  H+   AS  +                 +S +TQN           
Sbjct: 421 HQLLQQQHQQAQLQAHLNLTASNQQVPPQLQQQINGGLPNNNNSLITQNTLNSLSTSVSC 480

Query: 115 PICPLLKNINSPAH--RRYHVHKTAQWHHSNDCLPFTPEGKKRSPTSS 252
           P CPL + I+S  H  +RY   +  +        PFTP G   SP+SS
Sbjct: 481 PPCPLCRGISSWKHDKKRYFCKECKK--------PFTPVGAGLSPSSS 520


>sp|Q9H329|E41LB_HUMAN Band 4.1-like protein 4B OS=Homo sapiens
           GN=EPB41L4B PE=2 SV=2
          Length = 900

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 100 GVTQNPICPLLKNINSPAHRRYHVHKTAQWHHSNDCLPFTPEGKK---RSPTSSIHRSMS 270
           G+ +N   P L    S  H   H H+    HHSN  L  T E K+   RSP SS  +S++
Sbjct: 487 GIEENGGTPFL-TAASGRHHHQHQHQHQHQHHSNYSLSLTLENKEGPLRSPNSS-SKSLT 544

Query: 271 K 273
           K
Sbjct: 545 K 545


>sp|Q9Z6M0|AROA_CHLPN 3-phosphoshikimate 1-carboxyvinyltransferase
           OS=Chlamydia pneumoniae GN=aroA PE=3 SV=1
          Length = 445

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = +1

Query: 70  SKTDSFFGSSGVTQNPICPLLKNINSPAHRRYHVHKTAQWHHSND--CLPFTPEGKKRSP 243
           SK  +  GSS + + P+ PLL+ + +           A +H S+D   LPFT  G  RS 
Sbjct: 106 SKEITVTGSSQLQRRPMAPLLQALRNFG---------ASFHFSSDKSVLPFTMSGPLRSA 156

Query: 244 TSSIHRSMSKACKSFTVPTFVDTNPHS 324
            S +  S S+   +  V   +   P S
Sbjct: 157 YSDVEGSDSQFASALAVACSLAEGPCS 183


>sp|Q66KJ5|CG041_XENTR UPF0452 protein C7orf41 homolog OS=Xenopus
           tropicalis PE=2 SV=2
          Length = 131

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
 Frame = +1

Query: 67  TSKTDSFFGSSGVTQNPICPLLKNINSPAHRRYHVHKTAQWHHSNDCLPFTPEGK---KR 237
           T +   F+   GV+   +CP      S     +HV     W  S DCLPF    +     
Sbjct: 27  TERRMDFYADPGVSFYVLCP-----ESGCGDHFHV-----WSESEDCLPFLQLAQDYISS 76

Query: 238 SPTSSIHRSMSKACKSF 288
               ++H  + K  KSF
Sbjct: 77  CGKKTLHEILEKVFKSF 93


>sp|Q7ZX36|CG041_XENLA UPF0452 protein C7orf41 homolog OS=Xenopus
           laevis PE=2 SV=1
          Length = 131

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
 Frame = +1

Query: 67  TSKTDSFFGSSGVTQNPICPLLKNINSPAHRRYHVHKTAQWHHSNDCLPFTPEGK---KR 237
           T +   F+   GV+   +CP      S     +HV     W  S DCLPF    +     
Sbjct: 27  TERRMDFYADPGVSFYVLCP-----ESGCGDHFHV-----WSESEDCLPFLQLAQDYISS 76

Query: 238 SPTSSIHRSMSKACKSF 288
               ++H  + K  KSF
Sbjct: 77  CGKKTLHEILEKVFKSF 93


>sp|Q8LF65|ATL4G_ARATH RING-H2 finger protein ATL4G OS=Arabidopsis
           thaliana GN=ATL4G PE=2 SV=2
          Length = 235

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 163 YHVHKTAQWHHSNDCLPFTPEGKKRSPTSSIHRSMSKACKSFTVPTFVDTNPH 321
           +HVH    W HS+   P     +       +  SM +   S + P + DTN H
Sbjct: 99  FHVHCIDMWFHSHSSCPLC-RSQIEPFAGGVKSSMDEVAISISDPVYGDTNHH 150
tr_hit_id B5IJY0
Definition tr|B5IJY0|B5IJY0_9CHRO Ribonuclease III OS=Cyanobium sp. PCC 7001
Align length 55
Score (bit) 34.7
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921539|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_B11.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5IJY0|B5IJY0_9CHRO Ribonuclease III OS=Cyanobium sp. PCC 700...    35   2.9  
tr|B6L372|B6L372_BRAFL Putative uncharacterized protein OS=Branc...    35   2.9  
tr|Q5B3M9|Q5B3M9_EMENI Putative uncharacterized protein OS=Emeri...    33   6.2  
tr|A8Q6L1|A8Q6L1_MALGO Putative uncharacterized protein OS=Malas...    33   6.4  

>tr|B5IJY0|B5IJY0_9CHRO Ribonuclease III OS=Cyanobium sp. PCC 7001
           GN=rnc PE=4 SV=1
          Length = 245

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -1

Query: 264 GPMDRGCRASLLSFRSEW-EAIIGMVPLCCLVYVIPPVSWTIDIFQKRTDRILSD 103
           GPM RG RA + + R+E  EA+IG V  C    + P ++W    +Q+ +  +L+D
Sbjct: 111 GPMARGDRAGIATVRAELCEALIGAVYRCWGDSLEPVLTWLTPHWQQASQELLAD 165


>tr|B6L372|B6L372_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_65551 PE=4 SV=1
          Length = 1103

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +1

Query: 118 ICPLLKNINSPAHRRYHVHKTAQWHHSNDCLP-FTPEGKKRSPTSS-IHRSMSKACKSFT 291
           ICP    + S AH    +HK  +W H+   LP F  E  + S T S + R   + C+ FT
Sbjct: 442 ICPCAF-VTSLAHDNDAIHKRIKWLHNKTSLPVFVVEDSRISKTESRLIRETFETCRQFT 500

Query: 292 VPTFVDTNPHS 324
               +D   +S
Sbjct: 501 PLVILDVQRYS 511


>tr|Q5B3M9|Q5B3M9_EMENI Putative uncharacterized protein
           OS=Emericella nidulans GN=AN4851.2 PE=4 SV=1
          Length = 1408

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 84  LFWLIWRHSESYLSASEKYQ*SSSQEVSRTQDSTMAPFQ*LPPIH 218
           L +L W+H + Y  A + Y   SS E +  + S +  +  LPP+H
Sbjct: 607 LLFLAWQHIDVYFRALQPYVMLSSPEGATAEQSLLLAYSSLPPLH 651


>tr|A8Q6L1|A8Q6L1_MALGO Putative uncharacterized protein
           OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
           GN=MGL_2998 PE=4 SV=1
          Length = 581

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
 Frame = +1

Query: 40  HGHVG*YASTSKTDSFFG--SSGVTQNPICPLLKNINSPAHRRYHVHKTAQWHHSNDCLP 213
           HGH     S+S +    G  SS  + +P        +S  H  +H H     HH+N    
Sbjct: 397 HGHKSNSMSSSHSSKHHGHKSSSSSSSP--------SSHHHHHHHHHHHHHHHHTNSSSS 448

Query: 214 FTPEGKKRSPTSSIHRSMSKACKS 285
            TP G     TSS   S S    S
Sbjct: 449 STPSGHHHHKTSSSSSSRSSPSSS 472