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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921540
Clone id YMU001_000151_B12
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTAGCAGGTACTCATTTTTCTGTGCCAATAAGGGCTACTTGAAACACTTTTCCAATGTAC
ATACTAATGACTGGAACTTTATAATCAACATCTATCAGTGCTACATCTTCATTGTCTCTA
ACCCCACTTTGAAGACAGGATTGCTTTTTAAAGCGGCCATGATCAAAAAGCTTGACCACT
TCAAGTAACGATTGTCTCTAACCCCAATTTGAAGACAGGATTGCCTTTTAAAGCGGTAAT
GATCAAAAAGCTTGACCACTTCAAGGACGATATGTGTAGAGCATATGCAACAGCAGCAGG
TGTCAAGAAATTAATGAATGGCCAATAAAGCCCCACTTCAAGTCGATTCAGACAGCTTCA
CTAGGACCTGCTGCTGTATGCTGAGATCTTAATGAAACAGCTCACATAACTTATGAGTGT
GAATAGCACCTTGTAATCACCCATCCATGGATAGTGATGCTAGGGCAGCTGCCTCCTCCT
TCATT
■■Homology search results ■■ -
sp_hit_id P57248
Definition sp|P57248|LSPA_BUCAI Lipoprotein signal peptidase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
Align length 28
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921540|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_B12.
         (485 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57248|LSPA_BUCAI Lipoprotein signal peptidase OS=Buchnera ap...    31   3.4  
sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-associat...    30   4.4  
sp|P23136|UCRI_RHORU Ubiquinol-cytochrome c reductase iron-sulfu...    30   7.5  
sp|P62293|ASPM_PANTR Abnormal spindle-like microcephaly-associat...    30   7.5  
sp|P62289|ASPM_GORGO Abnormal spindle-like microcephaly-associat...    30   7.5  
sp|Q7MT07|DEF_PORGI Peptide deformylase OS=Porphyromonas gingiva...    29   9.8  
sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associat...    29   9.8  

>sp|P57248|LSPA_BUCAI Lipoprotein signal peptidase OS=Buchnera
           aphidicola subsp. Acyrthosiphon pisum GN=lspA PE=3 SV=1
          Length = 160

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 33  GYLKHFSNVHTNDWNF-IINIYQCYIFI 113
           G++  F ++H NDW+F   NI  C IFI
Sbjct: 121 GFVVDFIDIHINDWHFATFNIADCSIFI 148


>sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-associated
            protein OS=Homo sapiens GN=ASPM PE=1 SV=2
          Length = 3477

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 173  KLFDHGRFKKQSCLQSGVRDNEDVALIDVDYKVPVISMYIGKVFQV 36
            K+F H   KK++C+Q+G +D      I   ++  +I     K F++
Sbjct: 2595 KVFQHNELKKETCVQAGFQDMNIKKQIQEQHQAAIIIQKHCKAFKI 2640


>sp|P23136|UCRI_RHORU Ubiquinol-cytochrome c reductase iron-sulfur
           subunit OS=Rhodospirillum rubrum GN=petA PE=1 SV=2
          Length = 183

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -3

Query: 324 WPFINFLTPAAVAYALHISSLKWSSF----LIITALKGNPVF 211
           WPFI+F+ PAA   AL  + +  S+      I    +G PVF
Sbjct: 38  WPFIDFMNPAADTLALASTEVDVSAIAEGQAITVTWRGKPVF 79


>sp|P62293|ASPM_PANTR Abnormal spindle-like microcephaly-associated
            protein homolog OS=Pan troglodytes GN=ASPM PE=2 SV=1
          Length = 3477

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 173  KLFDHGRFKKQSCLQSGVRDNEDVALIDVDYKVPVISMYIGKVFQV 36
            K F H   KK++C+Q+G +D      I   ++  +I     K F++
Sbjct: 2595 KAFQHNELKKETCVQAGFQDMNIKKQIQEQHQAAIIIQKHCKAFKI 2640


>sp|P62289|ASPM_GORGO Abnormal spindle-like microcephaly-associated
            protein homolog OS=Gorilla gorilla gorilla GN=ASPM PE=2
            SV=1
          Length = 3476

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 173  KLFDHGRFKKQSCLQSGVRDNEDVALIDVDYKVPVISMYIGKVFQV 36
            K F H   KK++C+Q+G +D      I   ++  +I     K F++
Sbjct: 2594 KAFQHNELKKETCVQAGFQDMNIKKQIQEQHQAAIIIQKHCKAFKI 2639


>sp|Q7MT07|DEF_PORGI Peptide deformylase OS=Porphyromonas gingivalis
           GN=def PE=3 SV=1
          Length = 189

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +2

Query: 176 PLQVTIVSNPNLKTGLP----FKAVMIKK-LDHFKDDMCRAYATAAGVKKLMNGQ*SPTS 340
           P++V ++    LK   P    FK VMI   ++   +D+C  Y     +  +      PTS
Sbjct: 54  PIRVLVIDADPLKEDYPECAGFKRVMINAHIEERGEDLCTEYEGCLSLPAIHEKVERPTS 113

Query: 341 SRFRQLH*DLLLYAEIL 391
            R R +  D   + E+L
Sbjct: 114 IRIRYVDEDFQPHEEVL 130


>sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associated
            protein homolog OS=Pongo pygmaeus GN=ASPM PE=2 SV=1
          Length = 3471

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 173  KLFDHGRFKKQSCLQSGVRDNEDVALIDVDYKVPVISMYIGKVFQV 36
            K F H   KK++C+Q+G +D      I   ++  +I     K F++
Sbjct: 2589 KAFQHNELKKETCVQAGFQDMNIKKQIQDQHQAAIIIQKNCKAFKI 2634
tr_hit_id B2I210
Definition tr|B2I210|B2I210_ACIBC Hemolysin activation/secretion protein OS=Acinetobacter baumannii (strain ACICU)
Align length 73
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921540|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_B12.
         (485 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2I210|B2I210_ACIBC Hemolysin activation/secretion protein OS...    34   4.1  
tr|A6UNR7|A6UNR7_METVS CRISPR-associated protein, TM1802 family ...    33   5.3  
tr|Q7RGP2|Q7RGP2_PLAYO Putative uncharacterized protein PY04304 ...    33   9.1  

>tr|B2I210|B2I210_ACIBC Hemolysin activation/secretion protein
           OS=Acinetobacter baumannii (strain ACICU) GN=ACICU_01912
           PE=4 SV=1
          Length = 581

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
 Frame = +2

Query: 194 VSNPNLKTGLPFKA---VMIKKLDHFKDDMCRAYATAAGVKKLMNGQ*SPTSSRFRQL-- 358
           +S+  LKTGLPFKA   V +K+LD   +++ R YA        ++ Q +P +++ ++L  
Sbjct: 173 ISSLQLKTGLPFKAGDIVNLKRLDQGLENLKRVYA--------VDMQITPATAQDKELTG 224

Query: 359 H*DLLLYAEILMK 397
           + DL+L  + L K
Sbjct: 225 YSDLILKLQALQK 237


>tr|A6UNR7|A6UNR7_METVS CRISPR-associated protein, TM1802 family
           OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM
           1224) GN=Mevan_0230 PE=4 SV=1
          Length = 559

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 30  KGYLK-HFSNVHTNDWNFIINIYQCYIFIVSNPTLKTGLLFKA 155
           K Y K HFS     DW F+ NI+  Y F+V    L  G  FK+
Sbjct: 366 KSYQKNHFSQKKIPDWRFMANIHSVYNFLVDCNCLNKGWNFKS 408


>tr|Q7RGP2|Q7RGP2_PLAYO Putative uncharacterized protein PY04304
           OS=Plasmodium yoelii yoelii GN=PY04304 PE=4 SV=1
          Length = 1850

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 54  NVHTNDWNFIINIYQCYIFIVSNPTLKTGLLFKAAMIKKLDH 179
           N++ ND +F   I+ C  F + N T     LFK     KLDH
Sbjct: 546 NINNNDVSFTDKIFSCNNFNIMNTTTFKDNLFKEPKYSKLDH 587