BP921543
Clone id YMU001_000151_C03
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TGATAAGAAGCATTTATTTTTATGCAGAAACATATATACATATATAAAGTCAATAGGGAG
AGTTACAACCCATGAGGTCAAATATTGGTGATTTCGACTCCGGGTGCAACGGCTTATGGC
TGAAGATTTGTATAAAGAATAAACTAATCAAAAAAGGCAAAAGCCAGAGAGGCAACTTTT
CCCACCATCTGGCAAATGGGCTGATTTGTGTCCTCTTGGGTCATAACAAAACAGGCTTTT
TGATTTTTGGGCTGATTGGTTCTTTCCTAAAACAGAAGCAAGAAGCTAATGGTTGGCTAT
GACTTACAAACCCTCTTCAGGCAATGGATTGTCAAGAGACTTTGGTAGAAATGGTCCGAA
TAAAGGTATAACCGCAACAAGCGCAAATAGAGACAGCAACGCAAACACCATCCACATGCC
TGGAAGAA
■■Homology search results ■■ -
sp_hit_id Q4P965
Definition sp|Q4P965|VTS1_USTMA Protein VTS1 OS=Ustilago maydis
Align length 35
Score (bit) 37.7
E-value 0.02
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921543|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_C03.
(428 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4P965|VTS1_USTMA Protein VTS1 OS=Ustilago maydis GN=VTS1 PE=... 38 0.020
sp|Q5BK24|CH076_RAT Uncharacterized protein C8orf76 homolog OS=R... 30 4.1
sp|P55620|Y4PO_RHISN Probable transposase for insertion sequence... 29 9.1

>sp|Q4P965|VTS1_USTMA Protein VTS1 OS=Ustilago maydis GN=VTS1 PE=3
SV=1
Length = 728

Score = 37.7 bits (86), Expect = 0.020
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2

Query: 317 SGNGLSRDFGRNGPNKGITATSANRDSNANTIHMP 421
SG G S +FGR G N G++A N DSN+N ++P
Sbjct: 437 SGWGQSDNFGRGGLNTGLSAFGGNNDSNSNQFNIP 471


>sp|Q5BK24|CH076_RAT Uncharacterized protein C8orf76 homolog
OS=Rattus norvegicus PE=2 SV=1
Length = 374

Score = 30.0 bits (66), Expect = 4.1
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2

Query: 158 QKPERQLFPPSGKWADLCPLGS*QNRLFDFWADWFFPKTEARS*WLAMTYKPSSGN 325
QKPERQ PPS A LC WF+ +TE+ + +T K G+
Sbjct: 19 QKPERQPEPPSSYGAKLCE------------PQWFYEETESSNDIEVLTLKKFRGD 62


>sp|P55620|Y4PO_RHISN Probable transposase for insertion sequence
element ISRM3-like OS=Rhizobium sp. (strain NGR234)
GN=y4pO PE=3 SV=1
Length = 400

Score = 28.9 bits (63), Expect = 9.1
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +3

Query: 252 LIGSFLKQKQEANGWL*LTNPLQAMDCQETLVEMV 356
++G +++Q + A WL + N L++ CQ+ L+ +V
Sbjct: 196 ILGLWIEQTEGAKFWLRVMNELKSRGCQDILIAVV 230


tr_hit_id A0E5Y4
Definition tr|A0E5Y4|A0E5Y4_PARTE Chromosome undetermined scaffold_8, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 39
Score (bit) 32.7
E-value 9.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921543|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_C03.
(428 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0E5Y4|A0E5Y4_PARTE Chromosome undetermined scaffold_8, whole... 33 9.4

>tr|A0E5Y4|A0E5Y4_PARTE Chromosome undetermined scaffold_8, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00003564001 PE=4 SV=1
Length = 351

Score = 32.7 bits (73), Expect = 9.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -3

Query: 117 ISRCTRSRNHQYLTSWVVTLPIDFI--YVYMFLHKNKCF 7
+S C RN++Y WV TL + I Y+ +F H K F
Sbjct: 80 MSNCIGQRNYRYFIGWVYTLVLQCIIWYIVLFQHTYKTF 118