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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921545
Clone id YMU001_000151_C05
Library
Length 496
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCTTCAAGGTTTATCCTCCACAAACAAGCACCTTTCTCATTTCTTCCAACGGACGCTCA
ATGCCAAGGATGTATCATTACATGCTTTATGTCCAAGCTAGCTACTTGAATAGCTTCTGT
CATTTTGGTATACATTAAACCTGGTGTTTGCAACATCTTTGTGTAATCCAACTAATTTAA
CAACGAAGTTGTCAGAAAATTTCCTTTTTTACCTTCTGATGCAGTACTCCTTTGAGCACC
ACATTGACGTCTTTCGCACCCATGCATAAGTCTTAACCATTGAAAATATCCATCCATTGG
CACTTTCCATTCTGTAGGTAAAAAATAGGACACCCACATCCTCAATTTATGTTTGTTAAT
TGGGAAAAAATCAAGATTCCCTGCACTTTAATTTGCAAATCCAAGGCTATTGTTATCCAA
GTGCTGGTCCTACTGCTGGATAACTTGATGCAAAGTTGTCAAATGTTTTCCGTGCCTTTA
CCAACTTTCTCTTCAA
■■Homology search results ■■ -
sp_hit_id Q91X84
Definition sp|Q91X84|CRTC3_MOUSE CREB-regulated transcription coactivator 3 OS=Mus musculus
Align length 22
Score (bit) 30.4
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921545|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_C05.
         (496 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91X84|CRTC3_MOUSE CREB-regulated transcription coactivator 3...    30   4.7  
sp|Q27YE1|L_IPPYV RNA-directed RNA polymerase OS=Ippy virus (iso...    30   6.0  
sp|P03906|NU4M_PANTR NADH-ubiquinone oxidoreductase chain 4 OS=P...    30   8.0  

>sp|Q91X84|CRTC3_MOUSE CREB-regulated transcription coactivator 3
           OS=Mus musculus GN=Crtc3 PE=2 SV=2
          Length = 619

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 2   SSRFILHKQAPFSFLPTDAQCQ 67
           +S+ +  +Q+P SFLPTDAQ Q
Sbjct: 420 ASQMVTSEQSPLSFLPTDAQAQ 441


>sp|Q27YE1|L_IPPYV RNA-directed RNA polymerase OS=Ippy virus
           (isolate Rat/Central African Republic/Dak An B 188
           d/1970) GN=L PE=3 SV=1
          Length = 2208

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 141 LVFATSLCNPTNLTTKLSENFLFYLLMQYSFEHHIDVF 254
           ++    LC P+  + KL +N  ++++   S  HH+++F
Sbjct: 617 MILLVILCQPSKRSQKLLQNLRYFIMAFVSDYHHVELF 654


>sp|P03906|NU4M_PANTR NADH-ubiquinone oxidoreductase chain 4 OS=Pan
           troglodytes GN=MT-ND4 PE=3 SV=2
          Length = 459

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
 Frame = -2

Query: 339 MWVSYFLPTEWKVPMDGYFQWLRLMHGCERRQCGAQRSTA---SEGKKGNFLTTSLLN*L 169
           MW++Y +    K+P+ G   WL   H  E    G+    A     G  G    T +LN L
Sbjct: 195 MWLAYTMAFMVKMPLYGLHLWLPKAH-VEAPIAGSMVLAAVLLKLGGYGMMRLTLILNPL 253

Query: 168 DYTKMLQTPGLMYTK----MTEAIQVASLDIKHVMIHP 67
             TK +  P LM +     MT +I +   D+K ++ +P
Sbjct: 254 --TKHMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYP 289
tr_hit_id Q7ZHX1
Definition tr|Q7ZHX1|Q7ZHX1_9HIV1 Envelope glycoprotein (Fragment) OS=Human immunodeficiency virus 1
Align length 60
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921545|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_C05.
         (496 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7ZHX1|Q7ZHX1_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   1.5  
tr|Q7ZHY0|Q7ZHY0_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.0  
tr|Q7ZHX5|Q7ZHX5_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.0  
tr|Q7ZHX3|Q7ZHX3_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.0  
tr|Q7ZHW7|Q7ZHW7_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.0  
tr|Q7ZHW3|Q7ZHW3_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.0  
tr|Q7ZHW1|Q7ZHW1_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.0  
tr|Q7ZHV9|Q7ZHV9_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.0  
tr|Q7ZHV8|Q7ZHV8_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.0  
tr|Q7ZHV7|Q7ZHV7_9HIV1 Envelope glycoprotein (Fragment) OS=Human...    35   2.0  
tr|A5K7D6|A5K7D6_PLAVI Putative uncharacterized protein OS=Plasm...    34   3.3  
tr|Q2MEB9|Q2MEB9_9HIV1 Envelope glycoprotein gp120 (Fragment) OS...    34   3.4  
tr|Q9YKS8|Q9YKS8_9HIV1 Env OS=Human immunodeficiency virus 1 GN=...    33   9.8  

>tr|Q7ZHX1|Q7ZHX1_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 265

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLDFFPINKHKLRMWVSYFLPTEWKVPMDGYFQW 277
           TLHQVI+Q  QH  N ++ FAN S G+L+   I  H       +F          G F W
Sbjct: 213 TLHQVIKQLKQHFTNKTIRFANSSGGDLE---ITTHSFNCGGEFFY-----CNTSGLFNW 264


>tr|Q7ZHY0|Q7ZHY0_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 261

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLD 370
           TLHQVI+Q  QH  N ++ FAN S G+L+
Sbjct: 209 TLHQVIKQLKQHFTNKTIRFANSSGGDLE 237


>tr|Q7ZHX5|Q7ZHX5_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 260

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLD 370
           TLHQVI+Q  QH  N ++ FAN S G+L+
Sbjct: 208 TLHQVIKQLKQHFTNKTIRFANSSGGDLE 236


>tr|Q7ZHX3|Q7ZHX3_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 265

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLDFFPINKHKLRMWVSYFLPTEWKVPMDGYFQW 277
           TLHQVI+Q  QH  N ++ FAN S G+L+   I  H       +F          G F W
Sbjct: 213 TLHQVIKQLKQHFTNKTVRFANSSGGDLE---ITTHSFNRGGEFFY-----CNTSGLFNW 264


>tr|Q7ZHW7|Q7ZHW7_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 266

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLD 370
           TLHQVI+Q  QH  N ++ FAN S G+L+
Sbjct: 214 TLHQVIKQLKQHFTNKTIRFANSSGGDLE 242


>tr|Q7ZHW3|Q7ZHW3_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 266

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLD 370
           TLHQVI+Q  QH  N ++ FAN S G+L+
Sbjct: 214 TLHQVIKQLKQHFTNKTIRFANSSGGDLE 242


>tr|Q7ZHW1|Q7ZHW1_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 265

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLD 370
           TLHQVI+Q  QH  N ++ FAN S G+L+
Sbjct: 213 TLHQVIKQLKQHFTNKTIRFANSSGGDLE 241


>tr|Q7ZHV9|Q7ZHV9_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 266

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLD 370
           TLHQVI+Q  QH  N ++ FAN S G+L+
Sbjct: 214 TLHQVIKQLKQHFTNKTIRFANSSGGDLE 242


>tr|Q7ZHV8|Q7ZHV8_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 260

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLD 370
           TLHQVI+Q  QH  N ++ FAN S G+L+
Sbjct: 208 TLHQVIKQLKQHFTNKTIRFANSSGGDLE 236


>tr|Q7ZHV7|Q7ZHV7_9HIV1 Envelope glycoprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=env PE=4 SV=1
          Length = 266

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -2

Query: 456 TLHQVIQQ*DQHLDNNSLGFAN*SAGNLD 370
           TLHQVI+Q  QH  N ++ FAN S G+L+
Sbjct: 214 TLHQVIKQLKQHFTNKTIRFANSSGGDLE 242