NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921548
Clone id YMU001_000151_C10
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGTCCAGTTCCTAGAATACCATCATAGATTCCTACTCGTAGGGTCCGGAAGTAAGATGA
TGTGAGGGTTCCTCCTAGTTCGAATTCTACTTCCTCAGCTGTAAATTGAGATAGAACGTC
TTTCCCATTTGCTAGTTCTACCACTAATTTCTTGGTGGTGTATGGGTTTAATCTGAGCTT
CCTTAAGCATTTAGGGGAGGGAAAAGAGTGTGTGCTACCACAATCTATAAGTAATTCAAA
TTGTTCACCTTGTTTATTTGCAGTGGTTTGGATGACTGCATACTGTTGCGGAGCTCCAGA
GTTATCAATAGCGACAAAAAGAGTAGCTCTTTTATCTTCTTCATTCATCAAGGTTGGATC
TCCCATTGCAGCATAGACTCTAGCTCCTCTACCTCTTCCTTTGCCTTGTCCTCTATTTCT
TCCTCCTCTTTGATTATTTCTTTGGCCTGACTGAGACTGAGGAATGGTCCC
■■Homology search results ■■ -
sp_hit_id Q9C5V5
Definition sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana
Align length 76
Score (bit) 32.0
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921548|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_C10.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thal...    32   1.4  
sp|A1RZC5|PYRB_THEPD Aspartate carbamoyltransferase OS=Thermofil...    32   1.9  
sp|Q75AL4|NCB5R_ASHGO NADH-cytochrome b5 reductase 1 OS=Ashbya g...    32   1.9  
sp|Q6CHP1|MKAR_YARLI 3-ketoacyl-CoA reductase OS=Yarrowia lipoly...    31   3.2  
sp|A9KJI8|RS3_CLOPH 30S ribosomal protein S3 OS=Clostridium phyt...    30   5.4  
sp|Q9GMY2|PEPC_RABIT Gastricsin OS=Oryctolagus cuniculus GN=PGC ...    30   5.4  
sp|Q6BWK1|MED10_DEBHA Mediator of RNA polymerase II transcriptio...    30   5.4  

>sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis
           thaliana GN=GLR2.8 PE=2 SV=2
          Length = 947

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = +2

Query: 71  PPSSNSTSSAVN*DRTSFPFASSTTNFLVVYGFNLSFLKHLGEGKECVLPQSISNSNCSP 250
           P + N      N D   +   +   +FL+  GFN+S LK  G  +EC     +SN + S 
Sbjct: 671 PAAINVKDLIKNGDYVGYQHGAFVKDFLIKEGFNVSKLKPFGSSEEC--HALLSNGSISA 728

Query: 251 CLFAVVWMTA----YC 286
               V ++ A    YC
Sbjct: 729 AFDEVAYLRAILSQYC 744


>sp|A1RZC5|PYRB_THEPD Aspartate carbamoyltransferase OS=Thermofilum
           pendens (strain Hrk 5) GN=pyrB PE=3 SV=1
          Length = 315

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -1

Query: 273 IQTTANKQGEQFELLIDCGSTHSFPSPKCLRKLRLNPYTTKKLVVELANGKDVLSQFT-A 97
           +++ +   GE   L +       FP P    K+R +     KL+     G  VL      
Sbjct: 220 VESPSEVIGELDVLYVTRIQRERFPDPSEYEKVRGSYVVDSKLLRNAKEGLIVLHPLPRV 279

Query: 96  EEVEFELGGTLTSSYFRTLRVGI 28
           +E+ F++ GT  + YF   R+GI
Sbjct: 280 DEISFDVDGTPHAKYFEQARLGI 302


>sp|Q75AL4|NCB5R_ASHGO NADH-cytochrome b5 reductase 1 OS=Ashbya
           gossypii GN=CBR1 PE=3 SV=1
          Length = 287

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
 Frame = -1

Query: 321 LFVAIDNSGAPQQYAVIQTTANKQGEQFELLIDCGSTHS-----FPSPKCLRKLRLNPYT 157
           +F+    SGA Q    ++TT NK  ++F LL     TH+     F  P+    L L P  
Sbjct: 19  IFIYGKFSGAKQSQPAVKTTLNKDWQEFSLLTKTVLTHNTAIYRFGLPEADAVLGL-PIG 77

Query: 156 TKKLVVELANGKDVLSQFTAEEVEFELGG 70
               +  + +GK++L  +T   ++ +  G
Sbjct: 78  QHISISGVIDGKEMLRSYTPTSLDSDATG 106


>sp|Q6CHP1|MKAR_YARLI 3-ketoacyl-CoA reductase OS=Yarrowia
           lipolytica GN=YALI0A06787g PE=3 SV=1
          Length = 389

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 342 EEDKRATLFVAID-NSGAPQQYAVIQTTANKQGEQFELLIDCGSTHSFPSP 193
           E+ K  T F+AID ++ +PQ Y  I+T          L+ + G +HS P+P
Sbjct: 122 EKSKVETKFLAIDVSTDSPQNYKDIETVLETIPSVSILINNVGLSHSIPTP 172


>sp|A9KJI8|RS3_CLOPH 30S ribosomal protein S3 OS=Clostridium
           phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
           GN=rpsC PE=3 SV=1
          Length = 219

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = -1

Query: 180 KLRLNPYTTKKLVVELANGK--DVLSQFTAEEVEFELGGTLT------SSYFRTLRVG 31
           K+ +  YTTKKL +E+   K  DV +Q  AE +  +L   ++      S+  RT+R G
Sbjct: 87  KVEITQYTTKKLNLEIKEIKKPDVCAQLVAESIAAQLENRISFRRAMKSTMSRTMRSG 144


>sp|Q9GMY2|PEPC_RABIT Gastricsin OS=Oryctolagus cuniculus GN=PGC
           PE=2 SV=1
          Length = 388

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -1

Query: 291 PQQYA--VIQTTANKQGEQFELLIDCGSTHSFPS 196
           PQ+Y   +++ T  ++ E  E L+DC ST S P+
Sbjct: 285 PQEYMSDLLEATGAQENEYGEFLVDCDSTESLPT 318


>sp|Q6BWK1|MED10_DEBHA Mediator of RNA polymerase II transcription
           subunit 10 OS=Debaryomyces hansenii GN=NUT2 PE=3 SV=1
          Length = 147

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 306 DNSGAPQQYAVIQTTANKQGEQFELLIDCGSTHSFPSP 193
           DN G  Q +  +    N+   Q   L D G TH +P P
Sbjct: 38  DNQGTQQSHTALTHKTNQVISQLSSLTDSGFTHQYPIP 75
tr_hit_id A5C9A7
Definition tr|A5C9A7|A5C9A7_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 112
Score (bit) 52.8
E-value 9.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921548|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_C10.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5C9A7|A5C9A7_VITVI Putative uncharacterized protein OS=Vitis...    53   9e-06
tr|A5AQE0|A5AQE0_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A5ADJ3|A5ADJ3_VITVI Putative uncharacterized protein OS=Vitis...    48   2e-04
tr|A5BJ41|A5BJ41_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|A5BEK1|A5BEK1_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|A7Q471|A7Q471_VITVI Chromosome chr9 scaffold_49, whole genome...    47   5e-04
tr|A5X2S4|A5X2S4_9ERIC Polyprotein OS=Primula vulgaris PE=4 SV=1       46   8e-04
tr|Q7XBS7|Q7XBS7_ORYSJ Retrotransposon protein, putative, unclas...    46   0.001
tr|A5BMN5|A5BMN5_VITVI Putative uncharacterized protein OS=Vitis...    44   0.004
tr|A5C633|A5C633_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|Q7XW82|Q7XW82_ORYSJ OSJNBa0019J05.12 protein OS=Oryza sativa ...    43   0.007
tr|Q7XW92|Q7XW92_ORYSJ OSJNBb0043H09.2 protein OS=Oryza sativa s...    42   0.015
tr|Q7XM67|Q7XM67_ORYSA OSJNBa0079C19.16 protein OS=Oryza sativa ...    42   0.015
tr|Q65XD2|Q65XD2_ORYSJ Putative polyprotein OS=Oryza sativa subs...    42   0.015
tr|Q2QSH9|Q2QSH9_ORYSJ Retrotransposon protein, putative, unclas...    42   0.015
tr|Q0JEM3|Q0JEM3_ORYSJ Os04g0243500 protein OS=Oryza sativa subs...    42   0.015
tr|Q7XCD6|Q7XCD6_ORYSJ Retrotransposon protein, putative, unclas...    42   0.020
tr|Q0IVV4|Q0IVV4_ORYSJ Os10g0551400 protein OS=Oryza sativa subs...    42   0.020
tr|A7Q3M5|A7Q3M5_VITVI Chromosome chr13 scaffold_48, whole genom...    42   0.020
tr|Q75LZ2|Q75LZ2_ORYSJ Putative polyprotein OS=Oryza sativa subs...    41   0.026
tr|A5BRL2|A5BRL2_VITVI Putative uncharacterized protein OS=Vitis...    41   0.034
tr|A5C278|A5C278_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|A5ASY8|A5ASY8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.045
tr|Q2R2N6|Q2R2N6_ORYSJ Retrotransposon protein, putative, unclas...    40   0.058
tr|Q0J5A3|Q0J5A3_ORYSJ Os08g0451600 protein (Fragment) OS=Oryza ...    40   0.058
tr|B8B4X1|B8B4X1_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|B7F795|B7F795_ORYSJ cDNA clone:J023142E02, full insert sequen...    40   0.058
tr|A5C2E0|A5C2E0_VITVI Putative uncharacterized protein OS=Vitis...    40   0.058
tr|Q9ZVK3|Q9ZVK3_ARATH Putative retroelement pol polyprotein OS=...    40   0.076
tr|Q0JI68|Q0JI68_ORYSJ Os01g0820300 protein OS=Oryza sativa subs...    40   0.076

>tr|A5C9A7|A5C9A7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020633 PE=4 SV=1
          Length = 1852

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 38/112 (33%), Positives = 54/112 (48%)
 Frame = -1

Query: 345 NEEDKRATLFVAIDNSGAPQQYAVIQTTANKQGEQFELLIDCGSTHSFPSPKCLRKLRLN 166
           N ED+      A+    +P+   V  T    + +   +LID GSTH+F S K  R LRL 
Sbjct: 247 NREDELEVSIHALXGWASPRTMRVAATI---KSQPIMVLIDSGSTHNFLSDKVARTLRLP 303

Query: 165 PYTTKKLVVELANGKDVLSQFTAEEVEFELGGTLTSSYFRTLRVGIYDGILG 10
              TK   V +ANG+ +L Q   E+V  +L G   S    +L +   D +LG
Sbjct: 304 VVPTKSFTVHVANGERLLCQGRFEKVPIDLQGIPFSLTCYSLPLAGLDMVLG 355


>tr|A5AQE0|A5AQE0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003835 PE=4 SV=1
          Length = 1575

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 28/75 (37%), Positives = 43/75 (57%)
 Frame = -1

Query: 234 LLIDCGSTHSFPSPKCLRKLRLNPYTTKKLVVELANGKDVLSQFTAEEVEFELGGTLTSS 55
           +L+D GSTH+F S +    LRL    T+  +V +ANG+++  Q   EEV+  L GT+ S 
Sbjct: 646 VLVDSGSTHNFISERMANLLRLPVVPTESFMVRVANGENLRCQGRFEEVQINLQGTIFSL 705

Query: 54  YFRTLRVGIYDGILG 10
              +L +   D +LG
Sbjct: 706 TLYSLPLTGLDIVLG 720


>tr|A5ADJ3|A5ADJ3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017554 PE=4 SV=1
          Length = 2822

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 27/80 (33%), Positives = 43/80 (53%)
 Frame = -1

Query: 249 GEQFELLIDCGSTHSFPSPKCLRKLRLNPYTTKKLVVELANGKDVLSQFTAEEVEFELGG 70
           G    +L+D GSTH+F  P  +++  L    T+ L V++ANG+ V S+ +   V   + G
Sbjct: 335 GRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVCSEGSCAAVPLHMQG 394

Query: 69  TLTSSYFRTLRVGIYDGILG 10
            L +  F  L +G  D +LG
Sbjct: 395 NLYTIDFYILTLGGCDIVLG 414


>tr|A5BJ41|A5BJ41_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044100 PE=4 SV=1
          Length = 1366

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 27/80 (33%), Positives = 43/80 (53%)
 Frame = -1

Query: 249 GEQFELLIDCGSTHSFPSPKCLRKLRLNPYTTKKLVVELANGKDVLSQFTAEEVEFELGG 70
           G    +L+D GSTH+F  P  +++  L    T+ L V++ANG+ V S+ +   V   + G
Sbjct: 337 GRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRSEGSCAAVPLHMQG 396

Query: 69  TLTSSYFRTLRVGIYDGILG 10
            L +  F  L +G  D +LG
Sbjct: 397 NLYTIDFYILTLGGCDIVLG 416


>tr|A5BEK1|A5BEK1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026680 PE=4 SV=1
          Length = 1469

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 27/80 (33%), Positives = 43/80 (53%)
 Frame = -1

Query: 249 GEQFELLIDCGSTHSFPSPKCLRKLRLNPYTTKKLVVELANGKDVLSQFTAEEVEFELGG 70
           G    +L+D GSTH+F  P  +++  L    T+ L V++ANG+ V S+ +   V   + G
Sbjct: 370 GRAVVILVDTGSTHNFMDPSVIQRAHLPSNPTEGLSVKVANGQAVRSEGSCAAVPLHMQG 429

Query: 69  TLTSSYFRTLRVGIYDGILG 10
            L +  F  L +G  D +LG
Sbjct: 430 NLYTIDFYILTLGGCDIVLG 449


>tr|A7Q471|A7Q471_VITVI Chromosome chr9 scaffold_49, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029562001
           PE=4 SV=1
          Length = 219

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 27/80 (33%), Positives = 43/80 (53%)
 Frame = -1

Query: 249 GEQFELLIDCGSTHSFPSPKCLRKLRLNPYTTKKLVVELANGKDVLSQFTAEEVEFELGG 70
           G    +L+D GSTH+F  P  +++  L    T+ L V++ANG+ V S+ +   V   + G
Sbjct: 117 GRAVVILVDTGSTHNFMDPSVIQRAHLPFNPTEGLSVKVANGQAVRSEGSCAAVSLHMQG 176

Query: 69  TLTSSYFRTLRVGIYDGILG 10
            L +  F  L +G  D +LG
Sbjct: 177 NLYTIDFYILTLGGCDIVLG 196


>tr|A5X2S4|A5X2S4_9ERIC Polyprotein OS=Primula vulgaris PE=4 SV=1
          Length = 1359

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 27/88 (30%), Positives = 47/88 (53%)
 Frame = -1

Query: 273 IQTTANKQGEQFELLIDCGSTHSFPSPKCLRKLRLNPYTTKKLVVELANGKDVLSQFTAE 94
           I+     +G++  +L+D GSTH+F  PK +  L+L+   +  + V++ANG  + S  T E
Sbjct: 291 IRFVGKLKGQKVSILVDSGSTHNFIDPKWVPLLKLSNVQSDIMEVKIANGDKIKSSGTCE 350

Query: 93  EVEFELGGTLTSSYFRTLRVGIYDGILG 10
           +V+  +        F  L +  YD +LG
Sbjct: 351 KVKLLIQENQFEVDFLLLPLVGYDLVLG 378


>tr|Q7XBS7|Q7XBS7_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os10g42880 PE=4 SV=2
          Length = 1459

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 31/81 (38%), Positives = 41/81 (50%)
 Frame = -1

Query: 252 QGEQFELLIDCGSTHSFPSPKCLRKLRLNPYTTKKLVVELANGKDVLSQFTAEEVEFELG 73
           QG +  +LID GSTHSF       K+       K L V+LA+G  +L        ++ + 
Sbjct: 622 QGTELLMLIDSGSTHSFMDETVGSKMVGVSPLRKPLSVQLADGGSLLCSHEIANCKWWMQ 681

Query: 72  GTLTSSYFRTLRVGIYDGILG 10
           G   SS FR L +G YD ILG
Sbjct: 682 GHSFSSNFRLLNLGGYDIILG 702


>tr|A5BMN5|A5BMN5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042364 PE=4 SV=1
          Length = 566

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 34/113 (30%), Positives = 50/113 (44%)
 Frame = -1

Query: 348 MNEEDKRATLFVAIDNSGAPQQYAVIQTTANKQGEQFELLIDCGSTHSFPSPKCLRKLRL 169
           +NE+ +    F A+     P+   +    A     +  +LID GSTH+F S K    L L
Sbjct: 300 INEQTEPXISFHALTGWSTPKTMRITTKIAQ---HEVVVLIDSGSTHNFISEKVAYMLHL 356

Query: 168 NPYTTKKLVVELANGKDVLSQFTAEEVEFELGGTLTSSYFRTLRVGIYDGILG 10
               TK   V++ANG  +  Q+  E V   L G   S    +L +   D +LG
Sbjct: 357 PVVPTKPFTVKVANGTPLKCQWRFEHVHVILQGIPFSLTLYSLPLTXLDLVLG 409


>tr|A5C633|A5C633_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034528 PE=4 SV=1
          Length = 1241

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 36/113 (31%), Positives = 51/113 (45%)
 Frame = -1

Query: 348 MNEEDKRATLFVAIDNSGAPQQYAVIQTTANKQGEQFELLIDCGSTHSFPSPKCLRKLRL 169
           +NE+ K    F A+     P+    ++ TA     +  +LID GSTH+F S K    L L
Sbjct: 314 INEQTKPEISFHALTGWSTPK---TMRITAKIGQHKVVVLIDSGSTHNFISEKVADMLHL 370

Query: 168 NPYTTKKLVVELANGKDVLSQFTAEEVEFELGGTLTSSYFRTLRVGIYDGILG 10
               TK   V++ANG  +  Q   E V   L G   S    +L +   D +LG
Sbjct: 371 PVVPTKPFTVKVANGTPLKCQGRFEHVHVILQGIPFSLTLYSLPLTGLDLVLG 423