BP921559 |
Clone id |
YMU001_000151_E01 |
Library |
YMU01 |
Length |
370 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000151_E01. |
Accession |
BP921559 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2557Contig1 |
Sequence |
TATAGCACTTCTTTCATGTAGCCACTACTAGAGGATAGGGTACTCATCTTTGGTGCCAAT CCTCTCTGATACCATTAAGCTACATTGCTATGTCACACTCTATAATCCTCATCAAACAAG AAATCAAGAAATTTGTAGCTCTTTCCCTACATAAAATCATGACCCAACAGCTTCAAAGGC CTCTCTCCCAACTTCCTCATTTCCCCATTTCCAACATGAAGCTAGCAAAGCTAACCTACC AAAAGAATAACTACAGCCCGGCATTCTTTTTAGCATCTCCATAGCCTTCCTAAATTGCCA TGTATTGTATCCAATAAGGTCAACCAAGCAAGTGTGATGCTTAACATTTGAAGCCATAGG ATCGCTCATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZVG8 |
Definition |
sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana |
Align length |
53 |
Score (bit) |
41.6 |
E-value |
0.001 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6ETD1 |
Definition |
tr|Q6ETD1|Q6ETD1_ORYSJ Os02g0106300 protein OS=Oryza sativa subsp. japonica |
Align length |
56 |
Score (bit) |
46.2 |
E-value |
0.0008 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921559|Adiantum capillus-veneris mRNA, clone: YMU001_000151_E01. (370 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6ETD1|Q6ETD1_ORYSJ Os02g0106300 protein OS=Oryza sativa subs... 46 8e-04 tr|A2WZV4|A2WZV4_ORYSI Putative uncharacterized protein OS=Oryza... 46 8e-04 tr|A7QTV3|A7QTV3_VITVI Chromosome undetermined scaffold_171, who... 43 0.007 tr|A7NWE8|A7NWE8_VITVI Chromosome chr5 scaffold_2, whole genome ... 43 0.007 tr|A5C8U5|A5C8U5_VITVI Putative uncharacterized protein (Fragmen... 43 0.007 tr|A7QF00|A7QF00_VITVI Chromosome chr16 scaffold_86, whole genom... 43 0.009 tr|Q10MC4|Q10MC4_ORYSJ Os03g0314400 protein OS=Oryza sativa subs... 42 0.015 tr|A2XFZ4|A2XFZ4_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.015 tr|Q8LQE8|Q8LQE8_ORYSJ Pentatricopeptide (PPR) repeat-containing... 40 0.044 tr|A3B7R9|A3B7R9_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.044 tr|A2WWE8|A2WWE8_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.044 tr|A7PPE3|A7PPE3_VITVI Chromosome chr8 scaffold_23, whole genome... 40 0.058 tr|A5AR18|A5AR18_VITVI Putative uncharacterized protein OS=Vitis... 40 0.058 tr|A7PRH4|A7PRH4_VITVI Chromosome chr14 scaffold_27, whole genom... 40 0.076 tr|A7PHT0|A7PHT0_VITVI Chromosome chr17 scaffold_16, whole genom... 40 0.076 tr|A7NVQ5|A7NVQ5_VITVI Chromosome chr18 scaffold_1, whole genome... 40 0.076 tr|A5AZT2|A5AZT2_VITVI Putative uncharacterized protein OS=Vitis... 40 0.076 tr|A5AJY4|A5AJY4_VITVI Putative uncharacterized protein OS=Vitis... 40 0.076 tr|A7QTX0|A7QTX0_VITVI Chromosome undetermined scaffold_171, who... 39 0.099 tr|A7R627|A7R627_VITVI Chromosome undetermined scaffold_1140, wh... 39 0.13 tr|A7R3F3|A7R3F3_VITVI Chromosome undetermined scaffold_518, who... 39 0.13 tr|Q9FU66|Q9FU66_ORYSJ Putative uncharacterized protein P0013F10... 39 0.17 tr|Q2HS71|Q2HS71_MEDTR SAM (And some other nucleotide) binding m... 38 0.22 tr|Q7XK57|Q7XK57_ORYSJ OSJNBa0091C07.7 protein OS=Oryza sativa s... 38 0.29 tr|B8BDF8|B8BDF8_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.29 tr|A3ASQ6|A3ASQ6_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.29 tr|A7Q0S2|A7Q0S2_VITVI Chromosome chr7 scaffold_42, whole genome... 37 0.37 tr|A7NXD6|A7NXD6_VITVI Chromosome chr5 scaffold_2, whole genome ... 37 0.37 tr|Q1SN04|Q1SN04_MEDTR Tetratricopeptide-like helical OS=Medicag... 37 0.49 tr|Q0DC25|Q0DC25_ORYSJ Os06g0493800 protein OS=Oryza sativa subs... 37 0.49
>tr|Q6ETD1|Q6ETD1_ORYSJ Os02g0106300 protein OS=Oryza sativa subsp. japonica GN=OJ1359_D06.22 PE=2 SV=1 Length = 751
Score = 46.2 bits (108), Expect = 8e-04 Identities = 23/56 (41%), Positives = 36/56 (64%) Frame = -2
Query: 339 HHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVGREAFE 172 H+TC++DL + +F++A E +K+MP +FG LL+SC GN E+G+ A E Sbjct: 518 HYTCMIDLYS-RSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAE 572
>tr|A2WZV4|A2WZV4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05496 PE=4 SV=1 Length = 751
Score = 46.2 bits (108), Expect = 8e-04 Identities = 23/56 (41%), Positives = 36/56 (64%) Frame = -2
Query: 339 HHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVGREAFE 172 H+TC++DL + +F++A E +K+MP +FG LL+SC GN E+G+ A E Sbjct: 518 HYTCMIDLYS-RSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAE 572
>tr|A7QTV3|A7QTV3_VITVI Chromosome undetermined scaffold_171, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00006499001 PE=4 SV=1 Length = 729
Score = 43.1 bits (100), Expect = 0.007 Identities = 23/62 (37%), Positives = 37/62 (59%) Frame = -2
Query: 345 VKHHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVGREAFEAV 166 ++H+ C+VDL+G + R+A E +K+MP + ALL++CW W + EVG E + Sbjct: 565 LEHYACVVDLLG-RSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKM 623
Query: 165 GS 160 S Sbjct: 624 FS 625
>tr|A7NWE8|A7NWE8_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019892001 PE=4 SV=1 Length = 694
Score = 43.1 bits (100), Expect = 0.007 Identities = 22/59 (37%), Positives = 36/59 (61%) Frame = -2
Query: 348 NVKHHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVGREAFE 172 N+KH+ C++DL+G + ++A EM+++MP + LLA+C GN E+G A E Sbjct: 586 NIKHYGCMIDLLG-RAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAE 643
>tr|A5C8U5|A5C8U5_VITVI Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_012660 PE=4 SV=1 Length = 768
Score = 43.1 bits (100), Expect = 0.007 Identities = 23/62 (37%), Positives = 37/62 (59%) Frame = -2
Query: 345 VKHHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVGREAFEAV 166 ++H+ C+VDL+G + R+A E +K+MP + ALL++CW W + EVG E + Sbjct: 604 LEHYACVVDLLG-RSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKM 662
Query: 165 GS 160 S Sbjct: 663 FS 664
>tr|A7QF00|A7QF00_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037221001 PE=4 SV=1 Length = 453
Score = 42.7 bits (99), Expect = 0.009 Identities = 23/61 (37%), Positives = 37/61 (60%) Frame = -2
Query: 348 NVKHHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVGREAFEA 169 ++KH+TC+VDL+ + +A E++K++P S ALL C WGN E+G A E+ Sbjct: 299 SLKHYTCIVDLLS-RAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAES 357
Query: 168 V 166 + Sbjct: 358 L 358
>tr|Q10MC4|Q10MC4_ORYSJ Os03g0314400 protein OS=Oryza sativa subsp. japonica GN=Os03g0314400 PE=4 SV=1 Length = 648
Score = 42.0 bits (97), Expect = 0.015 Identities = 21/54 (38%), Positives = 32/54 (59%) Frame = -2
Query: 348 NVKHHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVG 187 N++H+ C+VDL+G ++A +++ MP ALL SCWK G+ EVG Sbjct: 535 NIRHYGCMVDLLG-RAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVG 587
>tr|A2XFZ4|A2XFZ4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11297 PE=4 SV=1 Length = 648
Score = 42.0 bits (97), Expect = 0.015 Identities = 21/54 (38%), Positives = 32/54 (59%) Frame = -2
Query: 348 NVKHHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVG 187 N++H+ C+VDL+G ++A +++ MP ALL SCWK G+ EVG Sbjct: 535 NIRHYGCMVDLLG-RAGYVKEAENLIESMPMSPDVPAWGALLGSCWKHGDNEVG 587
>tr|Q8LQE8|Q8LQE8_ORYSJ Pentatricopeptide (PPR) repeat-containing protein-like (Os01g0819800 protein) OS=Oryza sativa subsp. japonica GN=OJ1529_G03.20 PE=4 SV=1 Length = 646
Score = 40.4 bits (93), Expect = 0.044 Identities = 24/62 (38%), Positives = 36/62 (58%) Frame = -2
Query: 345 VKHHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVGREAFEAV 166 ++H+TC+VDL+G + +A E++ MP + ALL +C N E+G EAFE V Sbjct: 410 LEHYTCMVDLLG-RAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERV 468
Query: 165 GS 160 S Sbjct: 469 VS 470
>tr|A3B7R9|A3B7R9_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_019091 PE=4 SV=1 Length = 602
Score = 40.4 bits (93), Expect = 0.044 Identities = 24/62 (38%), Positives = 36/62 (58%) Frame = -2
Query: 345 VKHHTCLVDLIGYNTWQFRKAMEMLKRMPGCSYSFGRLALLASCWKWGNEEVGREAFEAV 166 ++H+TC+VDL+G + +A E++ MP + ALL +C N E+G EAFE V Sbjct: 366 LEHYTCMVDLLG-RAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERV 424
Query: 165 GS 160 S Sbjct: 425 VS 426
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