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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921565
Clone id YMU001_000151_E07
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTAAAACCAAGAAAATTTACATCAATACCGTGCTCACAAAAAGCCAGGGTC
TCTAGTTACAACCAACTGTGACATATCAAATTCCAAACAAAATGAGCGAATACAAAACAA
GACCAAAAAATCACCAAGAGGATGCCTCCGAATCCACCATACTGCCACCCCGACATAGGG
GCATTCTCAAGATAAATACACCAATGGATACCATAGATCCCCGACATTACCAAACATCAT
ACCGAGAAAAGAGAAAAGTCCGTAGTAGAGCGGAGTCCAGAGCCTCCATCACCTTGCAAT
AGTAATCCAAAGAAGAGTTCAAGCAAGACACCAAAAAAGGCACATGAGTGGCCACCACAG
GATGGAACCTCCAAGCATGTTCAAGATGGACCTACACGGAGCCACCACGCTGCCAAAGAA
TGCCACCCTTTAGCAGCATGCCGCAGCAGAGCCGATGCTAACGACAATGCTCACCACATC
TGCTGGCGAAGGGATCATGACGT
■■Homology search results ■■ -
sp_hit_id Q54DF2
Definition sp|Q54DF2|MRKA_DICDI Probable serine/threonine-protein kinase MARK-A OS=Dictyostelium discoideum
Align length 81
Score (bit) 32.0
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921565|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_E07.
         (492 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54DF2|MRKA_DICDI Probable serine/threonine-protein kinase MA...    32   1.6  
sp|Q63358|MYO9B_RAT Myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=...    31   2.7  
sp|P0AFY6|SBMA_ECOLI Protein sbmA OS=Escherichia coli (strain K1...    31   3.5  
sp|P0AFY7|SBMA_ECO57 Protein sbmA OS=Escherichia coli O157:H7 GN...    31   3.5  
sp|Q11087|PLC12_CAEEL Putative 1-acyl-sn-glycerol-3-phosphate ac...    30   6.0  
sp|P97929|BRCA2_MOUSE Breast cancer type 2 susceptibility protei...    30   7.8  
sp|P35824|SLAP_BACCI S-layer-related protein OS=Bacillus circula...    30   7.9  
sp|Q5KAB3|CWC27_CRYNE Peptidyl-prolyl isomerase CWC27 OS=Cryptoc...    30   7.9  

>sp|Q54DF2|MRKA_DICDI Probable serine/threonine-protein kinase
           MARK-A OS=Dictyostelium discoideum GN=mrkA PE=3 SV=1
          Length = 1060

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
 Frame = +3

Query: 15  LHQYRAHKK-------PGSLVTTNCDISNSKQNERI--QNKTKKSPRGCLRIHHTATPT* 167
           L +Y+ H K       P S  T     SN++QN     Q + ++  +     HHT     
Sbjct: 565 LIKYKRHHKRSNTVDSPKSTNTPQYRSSNTQQNNHHHQQQQQQQQQQQQQHHHHTQQQNQ 624

Query: 168 GHSQDKYTNGYHRSPTLPNII 230
             SQ +Y N  H  P  P I+
Sbjct: 625 QQSQQQYNNNNHNKPPTPTIV 645


>sp|Q63358|MYO9B_RAT Myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=1
            SV=1
          Length = 1980

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 7/142 (4%)
 Frame = +1

Query: 37   KSQGL*LQPTVTYQIPNKMSEYKTRPKNHQEDASESTILPPRHRGILKINTPMDTIDPRH 216
            +S G+  +  +  + PN +S  K  P    E  ++ T+    H  +       ++   R 
Sbjct: 1089 ESLGVETETWMNSKSPNGLSPKKEIPSPEMETPAQKTVPAESHEKVPSSREKRESRRQRG 1148

Query: 217  YQTSYREKRKVRSRAESRASI-------TLQ**SKEEFKQDTKKGT*VATTGWNLQACSR 375
             +   R+ + ++S  E  +++       +L+  + E F +DTK+                
Sbjct: 1149 LEHVERQNKHIQSCREENSTLREPSRKASLE--TGESFPEDTKEP--------REDGLET 1198

Query: 376  WTYTEPPRCQRMPPFSSMPQQS 441
            WT T  P C +  P    P +S
Sbjct: 1199 WTETAAPSCPKQVPIVGDPPRS 1220


>sp|P0AFY6|SBMA_ECOLI Protein sbmA OS=Escherichia coli (strain K12)
           GN=sbmA PE=1 SV=1
          Length = 406

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 249 DFSLFSV*CLVMSGIYGIHWCIYLENAPMSGWQYGGFGGILLVIFWSCFV 100
           DF +F    +V  G++ + W IY  +     WQY    G  L+IF + F+
Sbjct: 56  DFLIFYAYYIVCVGLFALFWFIYSPHR----WQYWSILGTALIIFVTWFL 101


>sp|P0AFY7|SBMA_ECO57 Protein sbmA OS=Escherichia coli O157:H7
           GN=sbmA PE=3 SV=1
          Length = 406

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 249 DFSLFSV*CLVMSGIYGIHWCIYLENAPMSGWQYGGFGGILLVIFWSCFV 100
           DF +F    +V  G++ + W IY  +     WQY    G  L+IF + F+
Sbjct: 56  DFLIFYAYYIVCVGLFALFWFIYSPHR----WQYWSILGTALIIFVTWFL 101


>sp|Q11087|PLC12_CAEEL Putative 1-acyl-sn-glycerol-3-phosphate
           acyltransferase acl-12 OS=Caenorhabditis elegans
           GN=acl-12 PE=2 SV=1
          Length = 391

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = -1

Query: 120 IFWSCFVFAHFVW---NLICHSW 61
           +FW C  +AH+V+    LI HSW
Sbjct: 362 VFWGCLYYAHYVYWLRPLIVHSW 384


>sp|P97929|BRCA2_MOUSE Breast cancer type 2 susceptibility protein
            homolog OS=Mus musculus GN=Brca2 PE=1 SV=1
          Length = 3329

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 6    QENLHQYRAHKKPGSLVTTNCDISNSKQNERIQNKTKKSPRGC 134
            Q+N H YR  +   +L T+N   ++SK  E I+N  +K+PR C
Sbjct: 1576 QQNYHMYRQTE---NLKTSNG--TSSKVQENIENNVEKNPRIC 1613


>sp|P35824|SLAP_BACCI S-layer-related protein OS=Bacillus circulans
            GN=butB PE=4 SV=1
          Length = 1616

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 337  VATTGWNLQACSRWTYTEPPRCQ-RMPPFSSMPQQSR 444
            +A +G  L A  RW++T PP C    PP S+ P   R
Sbjct: 1388 LAGSGRPLTAPRRWSWTRPPECSASCPPASNRPGARR 1424


>sp|Q5KAB3|CWC27_CRYNE Peptidyl-prolyl isomerase CWC27
           OS=Cryptococcus neoformans GN=CWC27 PE=3 SV=1
          Length = 491

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +1

Query: 118 NHQEDASESTILPPRHRGILKINTPMDTIDPRHYQTSYREKRKVRSRAESRASITLQ**S 297
           N   D  E  ++PP+ R I  I  P D I PR       E++K + +A+  A   ++   
Sbjct: 147 NLDTDKEERPLIPPKIRRIHIIENPFDDIVPR----ITAEEKKAQQKAKLEAKKDME--- 199

Query: 298 KEEFKQDTKKGT*VATTG 351
           + E +   KK T + + G
Sbjct: 200 QRERRAKAKKNTGLLSFG 217
tr_hit_id Q5NWL3
Definition tr|Q5NWL3|Q5NWL3_AZOSE TrbP protein of DNA transfer system OS=Azoarcus sp. (strain EbN1)
Align length 99
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921565|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_E07.
         (492 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5NWL3|Q5NWL3_AZOSE TrbP protein of DNA transfer system OS=Az...    37   0.38 
tr|A1CDB8|A1CDB8_ASPCL Cell division control protein Cdc6, putat...    35   2.5  
tr|Q2SFV8|Q2SFV8_HAHCH Putative uncharacterized protein OS=Hahel...    34   3.2  
tr|B0I1S4|B0I1S4_HUMAN DNHD1 variant protein (Fragment) OS=Homo ...    34   4.2  
tr|A8SAD9|A8SAD9_9FIRM Putative uncharacterized protein OS=Faeca...    33   5.5  
tr|B8B7A1|B8B7A1_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.5  
tr|A3BL20|A3BL20_ORYSJ Putative uncharacterized protein OS=Oryza...    33   5.5  
tr|B4J3H4|B4J3H4_DROGR GH15359 OS=Drosophila grimshawi GN=GH1535...    33   5.5  
tr|A0CDM2|A0CDM2_PARTE Chromosome undetermined scaffold_17, whol...    33   5.5  
tr|Q3ZXT3|Q3ZXT3_DEHSC Putative uncharacterized protein OS=Dehal...    33   5.6  
tr|A5FQV8|A5FQV8_DEHSB Putative uncharacterized protein OS=Dehal...    33   5.6  
tr|B1MAN3|B1MAN3_MYCA9 Putative TspO/MBR-related protein OS=Myco...    33   7.1  
tr|B7GPD1|B7GPD1_BIFLO Major facilitator superfamily MFS_1 OS=Bi...    33   7.3  
tr|A7NSV2|A7NSV2_VITVI Chromosome chr18 scaffold_1, whole genome...    33   9.3  
tr|Q6N091|Q6N091_HUMAN Putative uncharacterized protein DKFZp686...    33   9.3  
tr|Q6N041|Q6N041_HUMAN Putative uncharacterized protein DKFZp686...    33   9.3  
tr|A6NE94|A6NE94_HUMAN Putative uncharacterized protein IGHA2 (F...    33   9.3  
tr|A7BBE1|A7BBE1_9ACTO Putative uncharacterized protein OS=Actin...    33   9.5  

>tr|Q5NWL3|Q5NWL3_AZOSE TrbP protein of DNA transfer system
           OS=Azoarcus sp. (strain EbN1) GN=trbP PE=4 SV=1
          Length = 232

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = -3

Query: 418 RVAFFGSVVAPCRSILNMLGGSILWWPLMCLFWCL--A*TLLWITIAR*WRLWTPLYYGL 245
           R+  FG+V +     + + G +  WWPL  LF  L  A TLL +   R     T +  G+
Sbjct: 75  RLGLFGAVASV--PFIALGGLAFGWWPLNVLFTLLVIAGTLLLVEKGR---TGTWIVAGI 129

Query: 244 FSFLGMMFGNVGDLWYPLVYLS*ECPYVGVAVWWIRRHP 128
              +G   G+  + W+P V L       G+A WW  +HP
Sbjct: 130 LFLIG---GSSVEYWWPAVAL-------GLAAWWHCKHP 158


>tr|A1CDB8|A1CDB8_ASPCL Cell division control protein Cdc6, putative
           OS=Aspergillus clavatus GN=ACLA_006010 PE=4 SV=1
          Length = 638

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
 Frame = +1

Query: 97  EYKTRPKNHQEDASESTILPPRHR------GILKINTPMDTIDPRHYQTSYREKRKVRSR 258
           E+KT  K+   DA +S  + P+HR        L   TP     P   QT Y   R++ +R
Sbjct: 113 EFKTPSKSRYRDALDSPPITPKHRVQVGGSKALTPRTPRQISTPTTAQTIYTNARQLFAR 172

Query: 259 AESRASITLQ**SKEEFKQDTKKGT*VATTG 351
             S   +  +   +E+ K   K+G    T G
Sbjct: 173 GASSGRLIGRDSEREKLKSFIKEGIASRTGG 203


>tr|Q2SFV8|Q2SFV8_HAHCH Putative uncharacterized protein OS=Hahella
           chejuensis (strain KCTC 2396) GN=HCH_03732 PE=4 SV=1
          Length = 131

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 331 CLFWCLA*TLLWITIAR*WRLWTPLYYG--LFSFLGMMFGNVGDLWYPLV 188
           C+ W L   LLW+     W L  PL YG  L +  GM+ G+   L   L+
Sbjct: 39  CVAWTLCGPLLWVRSKYVWMLARPLIYGWALLTVFGMLMGDWASLLISLI 88


>tr|B0I1S4|B0I1S4_HUMAN DNHD1 variant protein (Fragment) OS=Homo
            sapiens PE=2 SV=1
          Length = 3841

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 270  SLHHLAIVIQRRVQARHQKRHMSGHHRMEPPSMFKM--DLHGATTLPKNATL*QHAAAEP 443
            S  HL +++ R +Q + Q     GHH+   PS+  +  DLH AT+ P+        + +P
Sbjct: 1506 SSSHLRLLLSRGIQGQTQASPQPGHHQDSKPSLLFLLEDLHLATSDPEK-------SCQP 1558

Query: 444  MLTTM 458
            +L T+
Sbjct: 1559 VLETL 1563


>tr|A8SAD9|A8SAD9_9FIRM Putative uncharacterized protein
           OS=Faecalibacterium prausnitzii M21/2
           GN=FAEPRAM212_01337 PE=4 SV=1
          Length = 168

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
 Frame = -3

Query: 367 MLGGSILWWPLMCLFWCLA*TLLWITIAR*WRLWTPLYYGLFSFL-GMMFGNVGDLWYPL 191
           +L G  LWW +    W L   L W+      R+    ++ +FS L G+ FG +       
Sbjct: 64  VLYGFGLWWVMYLYVWYLLALLAWLL----RRMDNAFFWAVFSGLYGLCFGGL----CAA 115

Query: 190 VYLS*ECPYVGVAVWWI------RRHPLGDF-LVLFCIRSFCLEFDMSQ 65
           VYL  + P   ++ WW+        H +G+F L+L   R  C    M++
Sbjct: 116 VYLFAKTPAFALS-WWLSGLSYDALHGVGNFVLMLLLYRPLCRALQMAK 163


>tr|B8B7A1|B8B7A1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_26446 PE=4 SV=1
          Length = 1285

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
 Frame = +3

Query: 72  ISNSKQNERIQNKTKKSPRGCLRIHHTATPT*GHSQDKYTNGYHRSPTLPNIIPRKEKSP 251
           +   KQ  + Q   +++ +  +  +H++ P   H   +  +  H SP++PN+ P +    
Sbjct: 169 LQQQKQQPQSQPPLQQTRKDVVSSNHSSKPINPHIPSQVKSSVHVSPSVPNVAPPRPP-- 226

Query: 252 **SGVQSLHHLAIVIQRRVQARHQKRHMSGHHRMEPPS-------MFKMDLHGATTLPKN 410
               VQ +  + + +    QA  Q     GH+   PP           M LHGA   P+ 
Sbjct: 227 ----VQQIPGMPMSMPFHHQAPLQ---FGGHNPQIPPQGVVPSSLQMSMGLHGANA-PQV 278

Query: 411 A------TL*QHAAAEPMLTTMLTTSAG 476
           A      T+  H   +P   TM+  +AG
Sbjct: 279 AQQMYIPTIQHHHQLQP--PTMMHQAAG 304


>tr|A3BL20|A3BL20_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_023742 PE=4 SV=1
          Length = 1651

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
 Frame = +3

Query: 72  ISNSKQNERIQNKTKKSPRGCLRIHHTATPT*GHSQDKYTNGYHRSPTLPNIIPRKEKSP 251
           +   KQ  + Q   +++ +  +  +H++ P   H   +  +  H SP++PN+ P +    
Sbjct: 262 LQQQKQQPQSQPPLQQTRKDVVSSNHSSKPINPHIPSQVKSSVHVSPSVPNVAPPRPP-- 319

Query: 252 **SGVQSLHHLAIVIQRRVQARHQKRHMSGHHRMEPPS-------MFKMDLHGATTLPKN 410
               VQ +  + + +    QA  Q     GH+   PP           M LHGA   P+ 
Sbjct: 320 ----VQQIPGMPMSMPFHHQAPLQ---FGGHNPQIPPQGVVPSSLQMSMGLHGANA-PQV 371

Query: 411 A------TL*QHAAAEPMLTTMLTTSAG 476
           A      T+  H   +P   TM+  +AG
Sbjct: 372 AQQMYIPTIQHHHQLQP--PTMMHQAAG 397


>tr|B4J3H4|B4J3H4_DROGR GH15359 OS=Drosophila grimshawi GN=GH15359
           PE=4 SV=1
          Length = 598

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 258 SGVQSLHHLAIVIQRRVQARHQKRHMSGHHRMEPPSMFKMDLHGATTLPKNAT 416
           +G  + HHL ++ QR  Q + Q++H   HH  +  +     L  +T  P +AT
Sbjct: 228 NGQTTTHHLLLLPQRHQQQQQQQQHQQHHHHHQTATTPHHRLATSTATPTSAT 280


>tr|A0CDM2|A0CDM2_PARTE Chromosome undetermined scaffold_17, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00007100001 PE=4 SV=1
          Length = 278

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -3

Query: 346 WWP-LMCLFWCLA*TLLWITIAR*WRLWTPLYYGLFSFLGMMFGNVGDLWYP--LVYL 182
           WWP ++C F+C+   + +      +R W  L Y  FSF+  +F  V    YP  +VYL
Sbjct: 87  WWPVIVCFFYCIKQDISY------FRFWPGLTYEDFSFIYWIFSLVSFHIYPTIIVYL 138


>tr|Q3ZXT3|Q3ZXT3_DEHSC Putative uncharacterized protein
           OS=Dehalococcoides sp. (strain CBDB1) GN=cbdbA907 PE=4
           SV=1
          Length = 84

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 162 SGWQYGGFGGILLVIFWSCFVFAHFVWNLI 73
           +GW +  FGGI +VIFW C +    +W +I
Sbjct: 8   AGWGWMIFGGIFMVIFW-CAIIGVIIWGII 36