BP921570
Clone id YMU001_000151_E12
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GGCACACCTGCGGTGTAGAGCTAGATTGCCTGGCTGGGGAGCCACTCCTGCGTGCTCGTG
AGTGTTGGGCATACCTGCGGTGTGAAGGGAGAAAGCCTGAGAGAGAGAGAGAGAACACTG
CAGTGAAAGTGAAGTATTGCAGATCTTGCGAACCGAAGCAAAGAAGGGAACATCGCATTC
AGCAGGTCGTCATGCGCATTACAATGCGGAGGCGACTTGAATTTGGACTTCTGAGCCGCC
TAATAAAACTAGTGTATTTGTGCTACCTTGTCTAGATTTTGTCACCCAATGTTAGATTGT
ACCTCATGTGGACTCCCTACATTGGCTAAATGTGGAATTTTTTGCCCGTCTATTTATTTC
AATATGTAATCGCTTATCTATGTCATGTNTATGGTAGACGGTTAAATCATGTCAGCACAT
GCTGGCTACCTG
■■Homology search results ■■ -
sp_hit_id P54860
Definition sp|P54860|UFD2_YEAST Ubiquitin conjugation factor E4 OS=Saccharomyces cerevisiae
Align length 21
Score (bit) 28.9
E-value 9.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921570|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_E12.
(432 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P54860|UFD2_YEAST Ubiquitin conjugation factor E4 OS=Saccharo... 29 9.3
sp|P20707|ODO1_AZOVI 2-oxoglutarate dehydrogenase E1 component O... 29 9.3

>sp|P54860|UFD2_YEAST Ubiquitin conjugation factor E4
OS=Saccharomyces cerevisiae GN=UFD2 PE=1 SV=2
Length = 961

Score = 28.9 bits (63), Expect = 9.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2

Query: 188 DLLNAMFPSLLRFARSAILHF 126
DLLNA+FP+LL + + HF
Sbjct: 146 DLLNAVFPTLLEYCNKHVSHF 166


>sp|P20707|ODO1_AZOVI 2-oxoglutarate dehydrogenase E1 component
OS=Azotobacter vinelandii GN=sucA PE=3 SV=1
Length = 943

Score = 28.9 bits (63), Expect = 9.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3

Query: 276 ILSPNVRLYLMWTPYIG*MW 335
+ PN L++ WTPY+G W
Sbjct: 530 VKEPNTELFVDWTPYLGHAW 549


tr_hit_id A6L6S8
Definition tr|A6L6S8|A6L6S8_BACV8 Trk system K+ uptake protein TrkH OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
Align length 41
Score (bit) 34.7
E-value 2.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921570|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_E12.
(432 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6L6S8|A6L6S8_BACV8 Trk system K+ uptake protein TrkH OS=Bact... 35 2.5
tr|B6VVR7|B6VVR7_9BACE Putative uncharacterized protein OS=Bacte... 35 2.5
tr|Q0IFY8|Q0IFY8_AEDAE Putative uncharacterized protein OS=Aedes... 33 9.3
tr|A0C4Q3|A0C4Q3_PARTE Chromosome undetermined scaffold_15, whol... 33 9.3
tr|A1CEA1|A1CEA1_ASPCL Putative uncharacterized protein OS=Asper... 33 9.3

>tr|A6L6S8|A6L6S8_BACV8 Trk system K+ uptake protein TrkH
OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
NCTC 11154) GN=BVU_3781 PE=4 SV=1
Length = 502

Score = 34.7 bits (78), Expect = 2.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3

Query: 163 LCFGSQDLQYFTFTAVFSLSLSGFLPSHRRYAQHSRARRSG 41
LC+G QD QYF +T + + + G L R A++ RR G
Sbjct: 49 LCYGEQDYQYFLYTILLNTLVGGVLLICSRGAENRLTRRDG 89


>tr|B6VVR7|B6VVR7_9BACE Putative uncharacterized protein
OS=Bacteroides dorei DSM 17855 GN=BACDOR_01375 PE=4 SV=1
Length = 501

Score = 34.7 bits (78), Expect = 2.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3

Query: 163 LCFGSQDLQYFTFTAVFSLSLSGFLPSHRRYAQHSRARRSG 41
LC+G QD QYF +T + + + G L R A++ RR G
Sbjct: 49 LCYGEQDYQYFLYTILLNTLVGGVLLICSRGAENRLTRRDG 89


>tr|Q0IFY8|Q0IFY8_AEDAE Putative uncharacterized protein OS=Aedes
aegypti GN=AAEL003745 PE=4 SV=1
Length = 358

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3

Query: 54 ARECWAYLRCEGRKPERERENTAVKVKYCRSCEPKQRREHRIQQVVMRITMRRRLEFGLL 233
A + W +L+C G P E N K CR+C+P R++ R Q + T RL+ ++
Sbjct: 35 ACQVWYHLKCAGETPGVE--NRPFK---CRTCQPPVRKQTRKQPRSQKSTSENRLKVPVV 89

Query: 234 SRL 242
+ +
Sbjct: 90 TTI 92


>tr|A0C4Q3|A0C4Q3_PARTE Chromosome undetermined scaffold_15, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00006269001 PE=4 SV=1
Length = 328

Score = 32.7 bits (73), Expect = 9.3
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3

Query: 48 LRAREC--WAYLRCEGR-KPERERENTAVKVKYCRSCEPKQRREHRIQQVVMRITMRRRL 218
++ EC W +L CE + + + +E T KV YC +C + ++ + QQ+ + + +
Sbjct: 118 IQCDECQKWNHLNCEAKCRNQNIKEETENKVYYCLNCSKIKNQQQQQQQIQQQKKQEKTI 177

Query: 219 E 221
E
Sbjct: 178 E 178


>tr|A1CEA1|A1CEA1_ASPCL Putative uncharacterized protein
OS=Aspergillus clavatus GN=ACLA_088910 PE=4 SV=1
Length = 856

Score = 32.7 bits (73), Expect = 9.3
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +3

Query: 24 DCLAGEPLLRARECWAYLRCEGRKPERERENTAVKVKYCRSCEPKQRREHRIQQVVMRIT 203
DC+ P C A+ C RER+ T R+ E K RREH+ +Q +
Sbjct: 735 DCITVNPPCTCSFCQAHYHCPNCTKLRERDGTC-----RRTAEEKARREHKWKQDMQ--A 787

Query: 204 MRRRLEFGLLSRLIK 248
+ LEF L +++
Sbjct: 788 LEAILEFKLADEVVE 802