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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921576
Clone id YMU001_000151_F09
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_F09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GACGAGTGTCGAGGCTCCTGCGAAAGGCATTTAACTGCACGTATTGCGCGCACTCATTGT
CGTGCTCATCATCAGAACTTGGACTTCCACCATAGCTGTAAGCTTCTCTTTCTTTTCTCT
CTAGCGCCATCACATCAGCAGAAACAGACTAGCGCCGATGATGAGGAAGCTCGTCAGTCT
TCGCCTTCTTCTGGGTCTCCTCTTTCTGTGTTGCTGCCTCTTTGACATAGGCGATTGCAT
GAAGCGGGAAGCCCGGCGCATGCTTGAGCCTTCCGATTGCCCCTGTGGAGAAATCTACAC
CGTTGCAGAGGGCGACACCCTGCAGAGCATCAGCGGCGACTGCAATGCTCCCTTCGTCCT
GATTGACAACCCACAAATCGAAGATGCCGATGATGTGTGGCCGGGCCTCATTCTCAAGCT
CAAATGTGCCCACTTCTAGTATTTGTCCCTCTTTGTGCACTCGCTTGGGATGGTAATTAT
ACACTCACATATCCATGTACGG
■■Homology search results ■■ -
sp_hit_id O94985
Definition sp|O94985|CSTN1_HUMAN Calsyntenin-1 OS=Homo sapiens
Align length 37
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921576|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_F09.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O94985|CSTN1_HUMAN Calsyntenin-1 OS=Homo sapiens GN=CLSTN1 PE...    32   2.2  
sp|P0ADE6|YGAU_ECOLI Uncharacterized protein ygaU OS=Escherichia...    31   3.7  
sp|P0ADE7|YGAU_ECOL6 Uncharacterized protein ygaU OS=Escherichia...    31   3.7  
sp|Q867T7|NCFA_DICDI NADPH oxidase activator OS=Dictyostelium di...    30   4.8  
sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2...    30   4.9  
sp|Q5B4Q8|VID21_EMENI Chromatin modification-related protein vid...    30   6.3  
sp|P70424|ERBB2_MOUSE Receptor tyrosine-protein kinase erbB-2 OS...    30   6.3  

>sp|O94985|CSTN1_HUMAN Calsyntenin-1 OS=Homo sapiens GN=CLSTN1 PE=1
           SV=1
          Length = 981

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 49  RTHCRAHHQNLDFHHSCKLLFLFSLAPSHQQKQTSAD 159
           +T    HH +L + H C+L+FLF   PS ++K   A+
Sbjct: 410 KTDMNRHHYSL-YVHGCRLIFLFRQDPSEEKKYRPAE 445


>sp|P0ADE6|YGAU_ECOLI Uncharacterized protein ygaU OS=Escherichia
           coli (strain K12) GN=ygaU PE=1 SV=2
          Length = 149

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = +2

Query: 290 EIYTVAEGDTLQSIS----GDCNAPFVLID--NPQIEDADDVWPGLILKL 421
           + YTV  GDTL +IS    G+ N    + +   P ++  D ++PG +L++
Sbjct: 97  QFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRI 146


>sp|P0ADE7|YGAU_ECOL6 Uncharacterized protein ygaU OS=Escherichia
           coli O6 GN=ygaU PE=3 SV=2
          Length = 149

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = +2

Query: 290 EIYTVAEGDTLQSIS----GDCNAPFVLID--NPQIEDADDVWPGLILKL 421
           + YTV  GDTL +IS    G+ N    + +   P ++  D ++PG +L++
Sbjct: 97  QFYTVKSGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRI 146


>sp|Q867T7|NCFA_DICDI NADPH oxidase activator OS=Dictyostelium
           discoideum GN=ncfA PE=2 SV=1
          Length = 604

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +3

Query: 243 SGKPGACLSLPIAPVEKSTPLQRATPCRASAATAMLPSS*LTTHKSKMPMMCGRASFSSS 422
           S  P   L  P +P   S+P   ++P  +S+++  LP +   +  S  P     +S SSS
Sbjct: 211 SSPPSYILKGPSSPPSSSSP-SSSSPSLSSSSSPKLPPTPKPSFGSSPPPSSSSSSSSSS 269

Query: 423 NVPTSSICP 449
           +  +SSI P
Sbjct: 270 SSSSSSISP 278


>sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2 SV=1
          Length = 5141

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 224  DIGDCMKREARRMLEPSDCPCGEIYT-VAEGDTLQSISGDCNAPFVLIDN 370
            D G+C  +E++    PS  PC E+    AEG+ L   SG C     L DN
Sbjct: 1354 DCGNCTCQESQWHCNPSGAPCEEMEPGCAEGEALCRESGHCVPLEWLCDN 1403


>sp|Q5B4Q8|VID21_EMENI Chromatin modification-related protein vid21
           OS=Emericella nidulans GN=vid21 PE=3 SV=1
          Length = 1447

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +3

Query: 246 GKPGACLSLPIAPVEKSTPLQRATPCRASAATAMLPSS*LTTHKSKMPMMCGRASFSSSN 425
           G+P      P++PV  + P    TP   +A+ A   +  ++  K   P         SS 
Sbjct: 211 GRPVHVTDQPLSPVSSAGPYSNNTPAPTAASPATSTTEDVSAEKLPTPKRIAATQERSSF 270

Query: 426 VPTS 437
           VPT+
Sbjct: 271 VPTT 274


>sp|P70424|ERBB2_MOUSE Receptor tyrosine-protein kinase erbB-2
           OS=Mus musculus GN=Erbb2 PE=1 SV=3
          Length = 1256

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 290 LHRGNRKAQACAGLPASCNRLCQRG 216
           LH GNR  +AC      CN LC RG
Sbjct: 495 LHSGNRPEEACGLEGLVCNSLCARG 519
tr_hit_id B8LMD4
Definition tr|B8LMD4|B8LMD4_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 61
Score (bit) 70.9
E-value 3.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921576|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_F09.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LMD4|B8LMD4_PICSI Putative uncharacterized protein OS=Picea...    71   3e-11
tr|A9NJY2|A9NJY2_PICSI Putative uncharacterized protein OS=Picea...    66   8e-10
tr|Q6NLQ4|Q6NLQ4_ARATH At4g25433 (Putative uncharacterized prote...    65   2e-09
tr|Q8H095|Q8H095_ORYSJ Os10g0524300 protein OS=Oryza sativa subs...    63   7e-09
tr|A3C6M3|A3C6M3_ORYSJ Putative uncharacterized protein OS=Oryza...    63   7e-09
tr|A2Z9I0|A2Z9I0_ORYSI Putative uncharacterized protein OS=Oryza...    63   7e-09
tr|Q8H053|Q8H053_ORYSJ Putative dihydrodipicolinate reductase-li...    63   9e-09
tr|B8ALW0|B8ALW0_ORYSI Putative uncharacterized protein OS=Oryza...    63   9e-09
tr|B6TQ19|B6TQ19_MAIZE LysM domain containing protein OS=Zea may...    62   1e-08
tr|A7R1T1|A7R1T1_VITVI Chromosome undetermined scaffold_376, who...    62   1e-08
tr|A7PPH4|A7PPH4_VITVI Chromosome chr8 scaffold_23, whole genome...    62   1e-08
tr|A5AZB4|A5AZB4_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|Q9FIS3|Q9FIS3_ARATH Arabidopsis thaliana genomic DNA, chromos...    62   2e-08
tr|Q7XTZ2|Q7XTZ2_ORYSJ OSJNBa0019K04.5 protein (Putative unchara...    61   3e-08
tr|Q01JW9|Q01JW9_ORYSA OSIGBa0147H17.4 protein OS=Oryza sativa G...    61   3e-08
tr|A9S7Z3|A9S7Z3_PHYPA Predicted protein (Fragment) OS=Physcomit...    58   2e-07
tr|Q9LXI6|Q9LXI6_ARATH Putative uncharacterized protein F3C22_19...    57   5e-07
tr|Q2RJ04|Q2RJ04_MOOTA Peptidoglycan-binding LysM OS=Moorella th...    42   0.016
tr|B3PGY8|B3PGY8_CELJU LysM domain protein OS=Cellvibrio japonic...    36   1.2  
tr|Q6FDT6|Q6FDT6_ACIAD Putative uncharacterized protein OS=Acine...    35   1.5  
tr|A1KC30|A1KC30_AZOSB Putative uncharacterized protein OS=Azoar...    35   1.5  
tr|B3NVA8|B3NVA8_DROER GG18881 OS=Drosophila erecta GN=GG18881 P...    35   2.0  
tr|B4Q2P0|B4Q2P0_DROYA GE16132 OS=Drosophila yakuba GN=GE16132 P...    35   2.6  
tr|A3TVW4|A3TVW4_9RHOB Gamma-D-glutamyl-L-diamino acid endopepti...    34   3.4  
tr|A3ASS3|A3ASS3_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.4  
tr|B2A4M6|B2A4M6_NATTJ Peptidoglycan-binding LysM OS=Natranaerob...    34   4.5  
tr|A7QMV8|A7QMV8_VITVI Chromosome chr14 scaffold_128, whole geno...    34   4.5  
tr|A5ARC1|A5ARC1_VITVI Putative uncharacterized protein OS=Vitis...    34   4.5  
tr|Q0CFT9|Q0CFT9_ASPTN Putative uncharacterized protein OS=Asper...    34   4.5  
tr|A6GZB6|A6GZB6_FLAPJ Putative uncharacterized protein OS=Flavo...    33   5.8  

>tr|B8LMD4|B8LMD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 97

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 31/61 (50%), Positives = 43/61 (70%)
 Frame = +2

Query: 239 MKREARRMLEPSDCPCGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILK 418
           +  +A  ++   + PC EIY V EG+TLQ+IS  CNAPF+L DNP I+D DD++ GL LK
Sbjct: 31  LNADAMTIVNRHNRPCEEIYIVGEGETLQTISEKCNAPFILFDNPHIQDTDDIYEGLPLK 90

Query: 419 L 421
           +
Sbjct: 91  I 91


>tr|A9NJY2|A9NJY2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 89

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY V EG+TLQ+IS  CNAPF+L DNP I+D DD++ G+ LK+
Sbjct: 40  CEEIYIVGEGETLQTISEKCNAPFILFDNPHIQDTDDIYEGVPLKI 85


>tr|Q6NLQ4|Q6NLQ4_ARATH At4g25433 (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At4g25433 PE=4 SV=1
          Length = 110

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 31/63 (49%), Positives = 41/63 (65%)
 Frame = +2

Query: 233 DCMKREARRMLEPSDCPCGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLI 412
           +C     ++M+E    PC E+Y V EGDTL SIS  C  PF++  NP I D DDV+PGL+
Sbjct: 45  NCEVWRGKQMMER---PCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLL 101

Query: 413 LKL 421
           +KL
Sbjct: 102 IKL 104


>tr|Q8H095|Q8H095_ORYSJ Os10g0524300 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0524300 PE=4 SV=2
          Length = 108

 Score = 63.2 bits (152), Expect = 7e-09
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = +2

Query: 281 PCGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           PC EIY V EG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 54  PCEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKI 100


>tr|A3C6M3|A3C6M3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_030945 PE=4 SV=1
          Length = 106

 Score = 63.2 bits (152), Expect = 7e-09
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = +2

Query: 281 PCGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           PC EIY V EG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 52  PCEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKI 98


>tr|A2Z9I0|A2Z9I0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34380 PE=4 SV=1
          Length = 106

 Score = 63.2 bits (152), Expect = 7e-09
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = +2

Query: 281 PCGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           PC EIY V EG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 52  PCEEIYVVEEGETLHSISDRCGDPYILEQNPHVHDPDDVFPGLVIKI 98


>tr|Q8H053|Q8H053_ORYSJ Putative dihydrodipicolinate reductase-like
           protein (Putative uncharacterized protein) OS=Oryza
           sativa subsp. japonica GN=OJ1263H11.2 PE=4 SV=1
          Length = 463

 Score = 62.8 bits (151), Expect = 9e-09
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY VAEG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 71  CEEIYVVAEGETLHSISDKCGDPYILEQNPHVHDPDDVFPGLVIKI 116


>tr|B8ALW0|B8ALW0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09751 PE=4 SV=1
          Length = 122

 Score = 62.8 bits (151), Expect = 9e-09
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = +2

Query: 284 CGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           C EIY VAEG+TL SIS  C  P++L  NP + D DDV+PGL++K+
Sbjct: 71  CEEIYVVAEGETLHSISDKCGDPYILEQNPHVHDPDDVFPGLVIKI 116


>tr|B6TQ19|B6TQ19_MAIZE LysM domain containing protein OS=Zea mays
           PE=4 SV=1
          Length = 113

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 26/47 (55%), Positives = 34/47 (72%)
 Frame = +2

Query: 281 PCGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           PC EIY VAEG+TL SIS  C  P +L  NP + D DDV+PGL++++
Sbjct: 61  PCEEIYVVAEGETLHSISDKCGDPLILERNPHVHDXDDVFPGLVIRI 107


>tr|A7R1T1|A7R1T1_VITVI Chromosome undetermined scaffold_376, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012396001 PE=4 SV=1
          Length = 120

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 25/47 (53%), Positives = 34/47 (72%)
 Frame = +2

Query: 281 PCGEIYTVAEGDTLQSISGDCNAPFVLIDNPQIEDADDVWPGLILKL 421
           PC EIY V EG+TL +IS  C  P+++  NP I D DDV+PGL++K+
Sbjct: 57  PCDEIYVVGEGETLHTISDKCGDPYIVEQNPHIHDPDDVFPGLVIKI 103