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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921577
Clone id YMU001_000151_F10
Library
Length 408
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACAAGGTGATATGAAATATGGAGACATGGGGATTACTGTGGGTGTCAAAGATGATGTGG
GTGCAACAGCAATGCCATGCTTTGCATGTAACGTGCTACCTATTGGAGAGACCACAAAGG
CACACAAGTTTTTCTTTATCATTGGGAACTTTTCATGTAGCAGACATGAATGGTAGCAAA
CTAGGAAAAGAAAATTCTATTGTAAAATTAGGATTGAAGATCTCCAGCTTCACTAATCAA
GAAGACTCAGGTGTGGGCTATGTGGAAGACCTAATGAAGGCAGTGAAACATGCAAAGTGA
GTCTTGAGCTTACCAATGAAGATTGTACCTGCAAAGAAACCAATAGGGGCACTATCTAAG
AAAGTTGTGGAGAAGACAAGGAAATCCATAGTTAGGAGTGCTCAACAC
■■Homology search results ■■ -
sp_hit_id P08286
Definition sp|P08286|H110_CHICK Histone H1.10 OS=Gallus gallus
Align length 73
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921577|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_F10.
         (408 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08286|H110_CHICK Histone H1.10 OS=Gallus gallus PE=1 SV=3          30   2.9  
sp|P08288|H11R_CHICK Histone H1.11R OS=Gallus gallus PE=3 SV=2         30   3.8  
sp|P08285|H103_CHICK Histone H1.03 OS=Gallus gallus PE=3 SV=2          30   5.0  
sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25 O...    29   6.5  
sp|Q1IUW9|ARAA_ACIBL L-arabinose isomerase OS=Acidobacteria bact...    29   8.5  

>sp|P08286|H110_CHICK Histone H1.10 OS=Gallus gallus PE=1 SV=3
          Length = 220

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +1

Query: 172 GSKLGKENSIVKLGLK--ISSFTNQEDSGVGYVEDLMKAVKHAK*VLSLPMKIVPAKKPI 345
           G  + K NS +KLGLK  +S  T  +  G G       + K  +     P K  PA KP 
Sbjct: 71  GYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLSKKPGEVKEKAPRKRTPAAKPK 130

Query: 346 GALSKKVVEKTRK 384
              +KK     +K
Sbjct: 131 KPAAKKPASAAKK 143


>sp|P08288|H11R_CHICK Histone H1.11R OS=Gallus gallus PE=3 SV=2
          Length = 219

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +1

Query: 172 GSKLGKENSIVKLGLK--ISSFTNQEDSGVGYVEDLMKAVKHAK*VLSLPMKIVPAKKPI 345
           G  + K NS +KLGLK  +S  T  +  G G       + K  + +   P K   A KP 
Sbjct: 72  GYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLSKKPGEGLEKAPKKKASAAKPK 131

Query: 346 GALSKKVVEKTRK 384
            A +KK     +K
Sbjct: 132 KAAAKKPAAAAKK 144


>sp|P08285|H103_CHICK Histone H1.03 OS=Gallus gallus PE=3 SV=2
          Length = 224

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +1

Query: 172 GSKLGKENSIVKLGLK--ISSFTNQEDSGVGYVEDLMKAVKHAK*VLSLPMKIVPAKKPI 345
           G  + K NS +KLGLK  +S  T  +  G G       + K        P K  PA KP 
Sbjct: 74  GYDVEKSNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLSKKSGDVKEKAPKKKTPAAKPK 133

Query: 346 GALSKKVVEKTRK 384
              +KK     +K
Sbjct: 134 KPAAKKPAAAAKK 146


>sp|Q9FPS2|UBP25_ARATH Ubiquitin carboxyl-terminal hydrolase 25
           OS=Arabidopsis thaliana GN=UBP25 PE=2 SV=1
          Length = 661

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
 Frame = +1

Query: 109 RPQRHTSFSLSLGTFHVADMNGS-----------KLGKENSIVKLGLKISSFTNQ----E 243
           RP    S S++LG   V+ +NG            K  KENS+  L  K++S T +    E
Sbjct: 424 RPHAKVSISVNLGAKRVSPVNGRLSFHQDENIAPKANKENSVSVLPTKVNSGTERKFGTE 483

Query: 244 DSGVGYVED 270
           + G G  E+
Sbjct: 484 NGGNGVKEN 492


>sp|Q1IUW9|ARAA_ACIBL L-arabinose isomerase OS=Acidobacteria
           bacterium (strain Ellin345) GN=araA PE=3 SV=1
          Length = 500

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 43  VSKMMWVQQQCHALHVTCYLLERPQRHTSFSLSLGTFHVAD 165
           V++ +W+ +   A+   C++      HT FSL L   H+ D
Sbjct: 422 VARAVWIPEPNLAVAAACWIYAGGAHHTGFSLCLTAQHLQD 462
tr_hit_id Q2HAD4
Definition tr|Q2HAD4|Q2HAD4_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
Align length 95
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921577|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_F10.
         (408 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HAD4|Q2HAD4_CHAGB Putative uncharacterized protein OS=Chaet...    36   1.1  
tr|B1WRG3|B1WRG3_CYAA5 Hsp70-like protein OS=Cyanothece (strain ...    34   3.2  
tr|A4YIL6|A4YIL6_METS5 Metal dependent phosphohydrolase OS=Metal...    34   3.2  
tr|A7Z2J0|A7Z2J0_BACA2 AcoC OS=Bacillus amyloliquefaciens (strai...    33   5.5  
tr|Q6YPP0|Q6YPP0_ONYPE DNA primase OS=Onion yellows phytoplasma ...    33   7.2  

>tr|Q2HAD4|Q2HAD4_CHAGB Putative uncharacterized protein OS=Chaetomium
            globosum GN=CHGG_02820 PE=4 SV=1
          Length = 1152

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
 Frame = +1

Query: 37   LWVS--KMMWVQQQCHALHVTCYLLERPQRHT-----SFSLSLGTFH-VADMNGSKLGKE 192
            LW++  K+   Q+    LH+TC LL +P R +      F   +G+FH V D +GSK+  +
Sbjct: 884  LWLAAAKIQDEQKMRRCLHLTCCLLPKPNRDSLEILFCFLKWVGSFHQVDDESGSKMDIK 943

Query: 193  NSIVKLG-------LKISSFTNQEDSGVGYVEDLM 276
            N    +         K+SSF N+    +  VE L+
Sbjct: 944  NLATVIAPNVLFDRNKLSSFDNEPMFAIQVVEMLI 978


>tr|B1WRG3|B1WRG3_CYAA5 Hsp70-like protein OS=Cyanothece (strain
           ATCC 51142) GN=cce_2464 PE=4 SV=1
          Length = 555

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 52  MMWVQQQCHALHVTCYLLERPQRHTSFSLSLGTFHVADMNGSKLGKENSIVKL 210
           M WV+  C+   + CYLL   +   S++L  GT +      + + +++ I+KL
Sbjct: 1   MSWVKAVCYFKRINCYLLNLFKIEVSYALDFGTSNTVITRVNPVTQQSEIIKL 53


>tr|A4YIL6|A4YIL6_METS5 Metal dependent phosphohydrolase
           OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
           GN=Msed_2129 PE=4 SV=1
          Length = 414

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +1

Query: 121 HTSFSLSLGTFHVADMNGSKLGKENSI 201
           HT FS SLGT+++AD  G+KL KE +I
Sbjct: 74  HTRFSHSLGTYYLADKIGNKLLKEGAI 100


>tr|A7Z2J0|A7Z2J0_BACA2 AcoC OS=Bacillus amyloliquefaciens (strain
           FZB42) GN=acoC PE=3 SV=1
          Length = 397

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 205 KLGLKISSFTNQEDSGVGYVEDLMKAVKHAK*VLSLPMKIVPAKKPIGALSKKVVEKTRK 384
           K GLK+ +       G     D++KA+K      S      P +KP  A+ K + ++  K
Sbjct: 129 KAGLKVETLNGTGPGGRIVKADVIKAMKTEAEPQSSVQTAQPEEKPASAMRKVIADRMHK 188

Query: 385 SIVRSAQ 405
           S+  SAQ
Sbjct: 189 SLQNSAQ 195


>tr|Q6YPP0|Q6YPP0_ONYPE DNA primase OS=Onion yellows phytoplasma
           GN=dnaG PE=4 SV=1
          Length = 441

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -2

Query: 236 LVKLEIFNPNFTIEFSFPSLLPFMSAT*KVPNDKEKLVCLCGLSNR*HVTCKAWHCCCTH 57
           L KL I +PNF I++ FP           +   +    C     N+ H     W CCC  
Sbjct: 20  LKKLNIISPNFNIKYRFPC---------PIHQGQNPTCCQITSDNKIH----CWKCCCDF 66

Query: 56  IIFDTH 39
            I D +
Sbjct: 67  DIIDVY 72