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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921580
Clone id YMU001_000151_G02
Library
Length 365
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGTTAATGATGATGATGATGGTGGGATCGTGTCGGCCATTTCAGTCCTTTACATCACTT
TGGCTTCGAAGCAGCTGCTCGGTACTGGTATTTTGTGGACGTGGTTTGGTTATTTCTATT
TGTCTCTATCTATTGGTGGGGAGGTTCATGACAAGGTATGGGCCTTGCCCTTCCCCAACT
CGTTTACAACGCGTTGTAAACCTTAACCACAGGGTCTACTTTATTATTTGGCTTTGCGAC
CTTAAACACAGAGTTTACTTCTTACACTAACACTGAAAAGAAACCTAAGTTGTGTTTTTA
GTTTGCATTGGGTATTAATATTCATGAAAGTTTCTATAGTTGCAGCATTGACAAATCTAT
GAATA
■■Homology search results ■■ -
sp_hit_id P26858
Definition sp|P26858|COX3_MARPO Cytochrome c oxidase subunit 3 OS=Marchantia polymorpha
Align length 39
Score (bit) 83.2
E-value 4.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921580|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_G02.
         (365 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26858|COX3_MARPO Cytochrome c oxidase subunit 3 OS=Marchanti...    83   4e-16
sp|Q9ZXX8|COX3_PAPHA Cytochrome c oxidase subunit 3 OS=Papio ham...    76   6e-14
sp|P00418|COX3_DROYA Cytochrome c oxidase subunit 3 OS=Drosophil...    75   1e-13
sp|P00417|COX3_DROME Cytochrome c oxidase subunit 3 OS=Drosophil...    75   1e-13
sp|P14853|COX3_SOYBN Cytochrome c oxidase subunit 3 OS=Glycine m...    74   2e-13
sp|O63915|COX3_MYXGL Cytochrome c oxidase subunit 3 OS=Myxine gl...    74   2e-13
sp|P92514|COX3_ARATH Cytochrome c oxidase subunit 3 OS=Arabidops...    74   2e-13
sp|Q35826|COX3_SPOFR Cytochrome c oxidase subunit 3 (Fragment) O...    74   2e-13
sp|P92665|COX3_MACRO Cytochrome c oxidase subunit 3 OS=Macropus ...    74   2e-13
sp|P41312|COX3_DIDMA Cytochrome c oxidase subunit 3 OS=Didelphis...    74   2e-13
sp|O47694|COX3_DAMLU Cytochrome c oxidase subunit 3 OS=Damaliscu...    74   2e-13
sp|P33508|COX3_ANOQU Cytochrome c oxidase subunit 3 OS=Anopheles...    74   2e-13
sp|O47689|COX3_TRAST Cytochrome c oxidase subunit 3 OS=Tragelaph...    74   3e-13
sp|O47687|COX3_TRASR Cytochrome c oxidase subunit 3 OS=Tragelaph...    74   3e-13
sp|O47688|COX3_TRASP Cytochrome c oxidase subunit 3 OS=Tragelaph...    74   3e-13
sp|O47686|COX3_TRAOR Cytochrome c oxidase subunit 3 OS=Tragelaph...    74   3e-13
sp|O47685|COX3_TRAIM Cytochrome c oxidase subunit 3 OS=Tragelaph...    74   3e-13
sp|P05505|COX3_RAT Cytochrome c oxidase subunit 3 OS=Rattus norv...    74   3e-13
sp|Q9T9X6|COX3_PONPY Cytochrome c oxidase subunit 3 OS=Pongo pyg...    74   3e-13
sp|P92696|COX3_PONAB Cytochrome c oxidase subunit 3 OS=Pongo abe...    74   3e-13
sp|Q95914|COX3_POLOR Cytochrome c oxidase subunit 3 OS=Polypteru...    74   3e-13
sp|Q9T9W8|COX3_PANPA Cytochrome c oxidase subunit 3 OS=Pan panis...    74   3e-13
sp|O47700|COX3_LITWA Cytochrome c oxidase subunit 3 OS=Litocrani...    74   3e-13
sp|Q95707|COX3_HYLLA Cytochrome c oxidase subunit 3 OS=Hylobates...    74   3e-13
sp|P00414|COX3_HUMAN Cytochrome c oxidase subunit 3 OS=Homo sapi...    74   3e-13
sp|P48661|COX3_HORSE Cytochrome c oxidase subunit 3 OS=Equus cab...    74   3e-13
sp|Q9T9Y6|COX3_GORGO Cytochrome c oxidase subunit 3 OS=Gorilla g...    74   3e-13
sp|P68300|COX3_GAZSP Cytochrome c oxidase subunit 3 OS=Gazella s...    74   3e-13
sp|P68089|COX3_GAZSO Cytochrome c oxidase subunit 3 OS=Gazella s...    74   3e-13
sp|O47710|COX3_GAZSA Cytochrome c oxidase subunit 3 OS=Gazella s...    74   3e-13

>sp|P26858|COX3_MARPO Cytochrome c oxidase subunit 3 OS=Marchantia
           polymorpha GN=COX3 PE=3 SV=2
          Length = 265

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 33/39 (84%), Positives = 37/39 (94%)
 Frame = +2

Query: 32  VGHFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGGS 148
           +GHF+P HHFGFEAAA YW+FVDVVWLFLFVSIYWWGG+
Sbjct: 227 LGHFTPKHHFGFEAAAFYWHFVDVVWLFLFVSIYWWGGN 265


>sp|Q9ZXX8|COX3_PAPHA Cytochrome c oxidase subunit 3 OS=Papio
           hamadryas GN=MT-CO3 PE=3 SV=1
          Length = 261

 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 28/35 (80%), Positives = 33/35 (94%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWG 142
           HF+P HHFGFEAAA YW+FVDV+WLFL++SIYWWG
Sbjct: 226 HFTPSHHFGFEAAAWYWHFVDVIWLFLYISIYWWG 260


>sp|P00418|COX3_DROYA Cytochrome c oxidase subunit 3 OS=Drosophila
           yakuba GN=mt:CoIII PE=3 SV=1
          Length = 262

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGG 145
           HFS  HHFGFEAAA YW+FVDVVWLFL+++IYWWGG
Sbjct: 227 HFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWGG 262


>sp|P00417|COX3_DROME Cytochrome c oxidase subunit 3 OS=Drosophila
           melanogaster GN=mt:CoIII PE=3 SV=1
          Length = 262

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGG 145
           HFS  HHFGFEAAA YW+FVDVVWLFL+++IYWWGG
Sbjct: 227 HFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWGG 262


>sp|P14853|COX3_SOYBN Cytochrome c oxidase subunit 3 OS=Glycine max
           GN=COX3 PE=2 SV=1
          Length = 265

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 30/38 (78%), Positives = 33/38 (86%)
 Frame = +2

Query: 32  VGHFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGG 145
           +GH +  HH GFEAAA YW+FVDVVWLFLFVSIYWWGG
Sbjct: 227 LGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGG 264


>sp|O63915|COX3_MYXGL Cytochrome c oxidase subunit 3 OS=Myxine
           glutinosa GN=MT-CO3 PE=3 SV=1
          Length = 261

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 29/35 (82%), Positives = 32/35 (91%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWG 142
           HF+  HHFGFEAAA YW+FVDVVWLFLF+SIYWWG
Sbjct: 226 HFTSSHHFGFEAAAWYWHFVDVVWLFLFISIYWWG 260


>sp|P92514|COX3_ARATH Cytochrome c oxidase subunit 3 OS=Arabidopsis
           thaliana GN=COX3 PE=2 SV=2
          Length = 265

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 30/38 (78%), Positives = 33/38 (86%)
 Frame = +2

Query: 32  VGHFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGG 145
           +GH +  HH GFEAAA YW+FVDVVWLFLFVSIYWWGG
Sbjct: 227 LGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWGG 264


>sp|Q35826|COX3_SPOFR Cytochrome c oxidase subunit 3 (Fragment)
           OS=Spodoptera frugiperda GN=COIII PE=2 SV=1
          Length = 147

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 29/35 (82%), Positives = 32/35 (91%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWG 142
           HFS  HHFGFEAAA YW+FVDVVWLFL++SIYWWG
Sbjct: 112 HFSSNHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 146


>sp|P92665|COX3_MACRO Cytochrome c oxidase subunit 3 OS=Macropus
           robustus GN=MT-CO3 PE=3 SV=1
          Length = 261

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 29/35 (82%), Positives = 32/35 (91%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWG 142
           HF+  HHFGFEAAA YW+FVDVVWLFL+VSIYWWG
Sbjct: 226 HFTSTHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260


>sp|P41312|COX3_DIDMA Cytochrome c oxidase subunit 3 OS=Didelphis
           marsupialis virginiana GN=MT-CO3 PE=3 SV=1
          Length = 281

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 29/35 (82%), Positives = 32/35 (91%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWG 142
           HF+  HHFGFEAAA YW+FVDVVWLFL+VSIYWWG
Sbjct: 226 HFTSTHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG 260
tr_hit_id Q4G300
Definition tr|Q4G300|Q4G300_9HEXA Cytochrome c oxidase subunit 3 OS=Japyx solifugus
Align length 38
Score (bit) 81.3
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921580|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_G02.
         (365 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4G300|Q4G300_9HEXA Cytochrome c oxidase subunit 3 OS=Japyx s...    81   2e-14
tr|Q6DVL4|Q6DVL4_9INSE Cytochrome c oxidase subunit 3 OS=Thermob...    80   4e-14
tr|Q8M1F4|Q8M1F4_CHAGL Cytochrome c oxidase subunit 3 OS=Chaetos...    80   5e-14
tr|Q6SL13|Q6SL13_POLPY Cytochrome c oxidase subunit 3 OS=Pollici...    80   5e-14
tr|Q5ISF1|Q5ISF1_GRYOR Cytochrome c oxidase subunit 3 OS=Gryllot...    80   5e-14
tr|Q7YAN1|Q7YAN1_CHAVU Cytochrome c oxidase subunit 3 OS=Chara v...    80   7e-14
tr|Q94TK0|Q94TK0_9COLE Cytochrome c oxidase subunit 3 (Fragment)...    79   9e-14
tr|Q70XR7|Q70XR7_SCUCO Cytochrome c oxidase subunit 3 OS=Scutige...    79   1e-13
tr|Q0ZD13|Q0ZD13_9HEXA Cytochrome c oxidase subunit 3 OS=Campode...    79   1e-13
tr|Q8W9R1|Q8W9R1_MESVI Cytochrome c oxidase subunit 3 OS=Mesosti...    78   2e-13
tr|Q9MLQ3|Q9MLQ3_LIMPO Cytochrome c oxidase subunit 3 OS=Limulus...    78   2e-13
tr|Q9MGD5|Q9MGD5_PENMO Cytochrome c oxidase subunit 3 OS=Penaeus...    78   2e-13
tr|Q8WB16|Q8WB16_CRIDU Cytochrome c oxidase subunit 3 OS=Criocer...    78   2e-13
tr|Q8WA87|Q8WA87_9MYRI Cytochrome c oxidase subunit 3 OS=Thyropy...    78   2e-13
tr|Q5QRW9|Q5QRW9_9SCOR Cytochrome c oxidase subunit 3 OS=Mesobut...    78   2e-13
tr|Q2HJK8|Q2HJK8_9NEOP Cytochrome c oxidase subunit 3 OS=Campanu...    78   2e-13
tr|Q09TE6|Q09TE6_9CRUS Cytochrome c oxidase subunit 3 OS=Ligia o...    78   2e-13
tr|B6DEA5|B6DEA5_GRYPL Cytochrome c oxidase subunit III OS=Gryll...    78   2e-13
tr|Q1KPW3|Q1KPW3_BACLA Cytochrome c oxidase subunit 3 OS=Bactroc...    78   3e-13
tr|Q14V50|Q14V50_ANOGL Cytochrome c oxidase subunit 3 OS=Anoplop...    78   3e-13
tr|B7SSK8|B7SSK8_9INSE Cytochrome c oxidase subunit III OS=Pedet...    78   3e-13
tr|Q6SKY7|Q6SKY7_9CRUS Cytochrome c oxidase subunit 3 OS=Speleon...    77   3e-13
tr|Q6L8D7|Q6L8D7_9MAXI Cytochrome c oxidase subunit 3 OS=Tetracl...    77   3e-13
tr|Q65Z08|Q65Z08_9MAXI Cytochrome c oxidase subunit 3 OS=Megabal...    77   3e-13
tr|B2CKW2|B2CKW2_BUTOI Cytochrome oxidase subunit 3 OS=Buthus oc...    77   3e-13
tr|Q20FD4|Q20FD4_9SAUR Cytochrome c oxidase subunit 3 OS=Kinoste...    77   4e-13
tr|Q9XMI4|Q9XMI4_FARNO Cytochrome c oxidase subunit 3 (Fragment)...    77   4e-13
tr|Q9B512|Q9B512_TETBI Cytochrome c oxidase subunit 3 OS=Tetrodo...    77   4e-13
tr|Q85RT9|Q85RT9_9NEOP Cytochrome c oxidase subunit 3 OS=Caecili...    77   4e-13
tr|Q6JT27|Q6JT27_ORNHU Cytochrome c oxidase subunit 3 OS=Ornitho...    77   4e-13

>tr|Q4G300|Q4G300_9HEXA Cytochrome c oxidase subunit 3 OS=Japyx
           solifugus GN=cox3 PE=3 SV=1
          Length = 262

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +2

Query: 32  VGHFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGG 145
           + HFSP HHFGFEAAA YW+FVDVVWLFLFVSIYWWGG
Sbjct: 225 MNHFSPNHHFGFEAAAWYWHFVDVVWLFLFVSIYWWGG 262


>tr|Q6DVL4|Q6DVL4_9INSE Cytochrome c oxidase subunit 3 OS=Thermobia
           domestica GN=COX3 PE=3 SV=1
          Length = 262

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 31/38 (81%), Positives = 35/38 (92%)
 Frame = +2

Query: 32  VGHFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGG 145
           + HFSP HHFGFEAAA YW+FVDVVWLFL++SIYWWGG
Sbjct: 225 LSHFSPTHHFGFEAAAWYWHFVDVVWLFLYISIYWWGG 262


>tr|Q8M1F4|Q8M1F4_CHAGL Cytochrome c oxidase subunit 3
           OS=Chaetosphaeridium globosum GN=cox3 PE=3 SV=1
          Length = 264

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 32/39 (82%), Positives = 36/39 (92%)
 Frame = +2

Query: 32  VGHFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGGS 148
           +GHF+  HHFGFEAAA YW+FVDVVWLFLFVSIYWWGG+
Sbjct: 226 LGHFTKKHHFGFEAAAWYWHFVDVVWLFLFVSIYWWGGA 264


>tr|Q6SL13|Q6SL13_POLPY Cytochrome c oxidase subunit 3 OS=Pollicipes
           polymerus GN=cox3 PE=3 SV=1
          Length = 262

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 32/36 (88%), Positives = 34/36 (94%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGG 145
           HFSP HHFGFEAAA YW+FVDVVWLFL+VSIYWWGG
Sbjct: 227 HFSPSHHFGFEAAAWYWHFVDVVWLFLYVSIYWWGG 262


>tr|Q5ISF1|Q5ISF1_GRYOR Cytochrome c oxidase subunit 3
           OS=Gryllotalpa orientalis GN=CO3 PE=3 SV=1
          Length = 261

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 31/35 (88%), Positives = 34/35 (97%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWG 142
           HFSP+HHFGFEAAA YW+FVDVVWLFLF+SIYWWG
Sbjct: 226 HFSPIHHFGFEAAAWYWHFVDVVWLFLFISIYWWG 260


>tr|Q7YAN1|Q7YAN1_CHAVU Cytochrome c oxidase subunit 3 OS=Chara
           vulgaris GN=cox3 PE=3 SV=1
          Length = 266

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 32/39 (82%), Positives = 36/39 (92%)
 Frame = +2

Query: 32  VGHFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGGS 148
           +GHF+  HHFGFEAAA YW+FVDVVWLFLFVSIYWWGG+
Sbjct: 228 MGHFTRRHHFGFEAAAWYWHFVDVVWLFLFVSIYWWGGN 266


>tr|Q94TK0|Q94TK0_9COLE Cytochrome c oxidase subunit 3 (Fragment)
           OS=Neocollyris sp. APV-1997 PE=3 SV=1
          Length = 162

 Score = 79.3 bits (194), Expect = 9e-14
 Identities = 30/37 (81%), Positives = 35/37 (94%)
 Frame = +2

Query: 32  VGHFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWG 142
           + HFSP+HHFGFEAAA YW+FVDVVWLFL++SIYWWG
Sbjct: 125 LNHFSPIHHFGFEAAAWYWHFVDVVWLFLYISIYWWG 161


>tr|Q70XR7|Q70XR7_SCUCO Cytochrome c oxidase subunit 3 OS=Scutigera
           coleoptrata GN=coiii PE=3 SV=1
          Length = 262

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGG 145
           H SP+HHFGFEAAA YW+FVDVVWLFLF SIYWWGG
Sbjct: 227 HLSPIHHFGFEAAAWYWHFVDVVWLFLFTSIYWWGG 262


>tr|Q0ZD13|Q0ZD13_9HEXA Cytochrome c oxidase subunit 3 OS=Campodea
           fragilis GN=COX3 PE=3 SV=1
          Length = 263

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGG 145
           HFS  HHFGFEAAA YW+FVDVVWLFLF+SIYWWGG
Sbjct: 227 HFSSFHHFGFEAAAWYWHFVDVVWLFLFISIYWWGG 262


>tr|Q8W9R1|Q8W9R1_MESVI Cytochrome c oxidase subunit 3 OS=Mesostigma
           viride GN=cox3 PE=3 SV=1
          Length = 266

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 32/37 (86%), Positives = 34/37 (91%)
 Frame = +2

Query: 38  HFSPLHHFGFEAAARYWYFVDVVWLFLFVSIYWWGGS 148
           HFS  HHFGFEAAA YW+FVDVVWLFLFVSIYWWGG+
Sbjct: 230 HFSRKHHFGFEAAAWYWHFVDVVWLFLFVSIYWWGGA 266