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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921585
Clone id YMU001_000151_G07
Library
Length 412
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAAGGACTTAATAGAAGCAGGAGAATTGTTGAACAAGTACAGTAAGCCACATTGTTATC
TTCTCAATCTTTGCAATGCTCAGAATGACAAAATTCACAAATCTTCAATTACATACCCAA
ATTATACATTTAAGCTTCAGCCAGGGTAAACTGGAAAATCTGGCCGAGTACTCAACCAAT
ACTCTAAAACTAACTACATTTAACCTACCCAACACTACTCCAAGGAACCAACGAGAAAAA
ATGGGTGCTTTCCATCTCAAGGACATCTTCCTGGGAATCAATGTGCTAGCACGGTGGCAC
TTTCAGGGGCCTTCACAGTAGATGCAAGCTTCTCCGACACACTGTCCCACTCTACTTCCT
TTAATCTTTTCATTCGCTCAGCCATTGTAACTAAACCTGCCTGGGCATGAAC
■■Homology search results ■■ -
sp_hit_id Q43768
Definition sp|Q43768|SYE_HORVU Glutamyl-tRNA synthetase OS=Hordeum vulgare
Align length 35
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921585|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_G07.
         (412 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q43768|SYE_HORVU Glutamyl-tRNA synthetase OS=Hordeum vulgare ...    33   0.45 
sp|O84883|Y875_CHLTR Uncharacterized protein CT_875 OS=Chlamydia...    33   0.58 
sp|Q6WRI0|IGS10_HUMAN Immunoglobulin superfamily member 10 OS=Ho...    33   0.58 
sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47...    32   0.77 
sp|Q43794|SYE_TOBAC Glutamyl-tRNA synthetase OS=Nicotiana tabacu...    32   1.00 
sp|Q9FEA2|SYE_ARATH Glutamyl-tRNA synthetase OS=Arabidopsis thal...    32   1.00 
sp|A4WVL1|EFG_RHOS5 Elongation factor G OS=Rhodobacter sphaeroid...    31   2.2  
sp|Q8VI88|ODFP4_MOUSE Outer dense fiber protein 4 OS=Mus musculu...    30   2.9  
sp|P58796|WRBA_METAC Flavoprotein wrbA OS=Methanosarcina acetivo...    30   3.8  
sp|Q9PN49|GUAA_CAMJE GMP synthase [glutamine-hydrolyzing] OS=Cam...    30   3.8  
sp|Q5UR32|YR556_MIMIV Uncharacterized protein R556 OS=Acanthamoe...    30   3.8  
sp|Q5HTL3|GUAA_CAMJR GMP synthase [glutamine-hydrolyzing] OS=Cam...    30   4.9  
sp|Q3SMH2|MURC_THIDA UDP-N-acetylmuramate--L-alanine ligase OS=T...    30   5.0  
sp|Q8PUV4|WRBA_METMA Flavoprotein wrbA OS=Methanosarcina mazei G...    29   6.5  
sp|P09783|VIRBA_AGRTU Protein virB10 OS=Agrobacterium tumefacien...    29   6.5  
sp|P05359|VIRBA_AGRT9 Protein virB10 OS=Agrobacterium tumefacien...    29   6.5  
sp|Q46B88|WRBA_METBF Flavoprotein wrbA OS=Methanosarcina barkeri...    29   8.4  
sp|Q24UV7|PSD_DESHY Phosphatidylserine decarboxylase proenzyme O...    29   8.5  
sp|A8MJ83|PSD_ALKOO Phosphatidylserine decarboxylase proenzyme O...    29   8.5  
sp|A1B023|EFG_PARDP Elongation factor G OS=Paracoccus denitrific...    29   8.5  

>sp|Q43768|SYE_HORVU Glutamyl-tRNA synthetase OS=Hordeum vulgare
           PE=2 SV=1
          Length = 560

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = -1

Query: 412 VHAQAGLVTMAERMKRLKEVEWDSVSEKLASTVKA 308
           V  Q+G V++ ER K LKEV W+S+ ++  S V++
Sbjct: 520 VAPQSGFVSLDERFKILKEVNWESLQKQQESPVES 554


>sp|O84883|Y875_CHLTR Uncharacterized protein CT_875 OS=Chlamydia
           trachomatis GN=CT_875 PE=4 SV=1
          Length = 591

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 403 QAGLVTMAERMKRLKEVEWDSVSEKLASTVKAPESAT 293
           Q GLV +A++++R  +  W SVS + +S  +A ES +
Sbjct: 85  QRGLVRVADKVRRAVQCAWSSVSTRRSSATRAAESGS 121


>sp|Q6WRI0|IGS10_HUMAN Immunoglobulin superfamily member 10 OS=Homo
            sapiens GN=IGSF10 PE=1 SV=1
          Length = 2623

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
 Frame = +1

Query: 16   KQENC*TSTVSHIVIFSIFAMLRMTKFTNLQLHTQ--IIHLSFSQGKLENLAEYSTNTLK 189
            K+++  TS++S  +      ++ +T+F+  ++  Q   ++    +G+L N  ++  +  K
Sbjct: 1172 KRDSVITSSLSGAITKPPMTIIAITRFSRRKIPWQQNFVNNHNPKGRLRN--QHKVSLQK 1229

Query: 190  LTTFNLPNTTPRNQREKMGAFHLKDIFLGI-----NVLARWHFQGPSQ*MQASPTHCPTL 354
             T   LP T+P   R+K+  FH   +   +     N L   H          + TH P  
Sbjct: 1230 STAVMLPKTSPALPRDKVSPFHFTTLSTSVMQIPSNTLTTAHH-------TTTKTHNPGS 1282

Query: 355  LP 360
            LP
Sbjct: 1283 LP 1284


>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260
           OS=Arabidopsis thaliana GN=At5g47260 PE=2 SV=2
          Length = 948

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 302 KCHRASTLIPRK-MSLRWKAPIFSRWFLGVVLGRLNVVSFRVLVEYSARFSSLPWLKLKC 126
           +C   +TL+ R+   L+W +  F +W  G+V+  L++   R L E     SSL  L+   
Sbjct: 517 QCSELTTLVFRRNRHLKWISGAFFQWMTGLVV--LDLSFNRELAELPEEVSSLVLLRFLN 574

Query: 125 IIWVC 111
           + W C
Sbjct: 575 LSWTC 579


>sp|Q43794|SYE_TOBAC Glutamyl-tRNA synthetase OS=Nicotiana tabacum
           PE=2 SV=1
          Length = 569

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -1

Query: 403 QAGLVTMAERMKRLKEVEWDSVS 335
           QAG VT  ER K L+EV+W+S S
Sbjct: 535 QAGFVTFDERFKILREVQWESFS 557


>sp|Q9FEA2|SYE_ARATH Glutamyl-tRNA synthetase OS=Arabidopsis
           thaliana GN=At5g64050 PE=2 SV=1
          Length = 570

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 15/38 (39%), Positives = 26/38 (68%)
 Frame = -1

Query: 403 QAGLVTMAERMKRLKEVEWDSVSEKLASTVKAPESATV 290
           QAG V+M ER K L+E++W+++++    +V    +ATV
Sbjct: 533 QAGFVSMEERFKILREIDWEALNKD--ESVPLESTATV 568


>sp|A4WVL1|EFG_RHOS5 Elongation factor G OS=Rhodobacter sphaeroides
           (strain ATCC 17025 / ATH 2.4.3) GN=fusA PE=3 SV=1
          Length = 705

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 12/101 (11%)
 Frame = +3

Query: 120 NYTFKLQPG*TGKSGRVLNQYSKTNYI*PTQHYSKEPTRKNGCFPSQGHLPG-NQCASTV 296
           +YT K Q G TG+  RV  Q   T    P Q YS E     G  P + ++PG  +   +V
Sbjct: 507 DYTHKKQTGGTGQFARVKLQIDPTE---PGQGYSFESKIVGGAVPKE-YIPGVEKGIKSV 562

Query: 297 ALSGAFT-----------VDASFSDTLSHSTSFNLFIRSAI 386
             SG              +D +F D  S   +F +  R+A+
Sbjct: 563 MDSGPLAGFPVIDFKVALIDGAFHDVDSSVLAFEIAARAAM 603


>sp|Q8VI88|ODFP4_MOUSE Outer dense fiber protein 4 OS=Mus musculus
           GN=Odf4 PE=2 SV=1
          Length = 290

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 296 HRASTLIPRKMSLRWKAPIFSRWFLGVVLGRLNVVSFRVLV 174
           HR ++L+P     +WKA   SRW   VV    ++V+F +L+
Sbjct: 24  HRRNSLLP----FQWKATNNSRWMAQVVASEFSLVAFLLLL 60


>sp|P58796|WRBA_METAC Flavoprotein wrbA OS=Methanosarcina
           acetivorans GN=wrbA PE=3 SV=1
          Length = 209

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 199 FNLPNTTPRNQREKMGAFHLKDIFLGINVLAR 294
           + +P T P    EKMGA   K +F  I VL R
Sbjct: 37  YQVPETLPEEVLEKMGAIETKKLFAHIPVLTR 68


>sp|Q9PN49|GUAA_CAMJE GMP synthase [glutamine-hydrolyzing]
           OS=Campylobacter jejuni GN=guaA PE=3 SV=1
          Length = 511

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 91  KFTNLQLHTQIIHLSFSQGKLENLAEYSTNTLKLTTF-NLPNTTPRNQREKMG 246
           KF  LQ H ++ H  F +  L+N A+Y+ N   +    +   T     RE++G
Sbjct: 162 KFFALQFHPEVQHSEFGKNILKNFAKYACNCESIWNMGSFAKTQAEKIREEVG 214
tr_hit_id A9SYW3
Definition tr|A9SYW3|A9SYW3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 44
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921585|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_G07.
         (412 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SYW3|A9SYW3_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.2  
tr|B6IYI3|B6IYI3_RHOCS Glycosyl transferase, group 2 family prot...    34   4.2  

>tr|A9SYW3|A9SYW3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_137714 PE=3 SV=1
          Length = 586

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = -1

Query: 412 VHAQAGLVTMAERMKRLKEVEWDSVSEKLASTVKAPESATVLAH 281
           V  +AGLV +  R+K L+EV+W +V+ KLA +  + E+   L+H
Sbjct: 544 VTEKAGLVPLDARIKILREVDWAAVTSKLAESA-SQETEPALSH 586


>tr|B6IYI3|B6IYI3_RHOCS Glycosyl transferase, group 2 family protein
           OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
           GN=RC1_4016 PE=4 SV=1
          Length = 343

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/57 (40%), Positives = 29/57 (50%)
 Frame = +3

Query: 204 PTQHYSKEPTRKNGCFPSQGHLPGNQCASTVALSGAFTVDASFSDTLSHSTSFNLFI 374
           P+  Y  E    N  F   G LPGN   STVA+ GA   D  F DTLS +  F +++
Sbjct: 144 PSGFYDGEAA--NELFIHFGCLPGN--LSTVAVDGALARDLPFRDTLSMTADFMMWL 196