BP921586 |
Clone id |
YMU001_000151_G08 |
Library |
YMU01 |
Length |
205 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000151_G08. |
Accession |
BP921586 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2Contig2 |
Sequence |
ATGCCAACTAAATTGGCTTGCTTTAAGAAAGTTTAGACAGAGGGCTTCTGGACAAGGAAG CCGGAGACCTGCACCTGCCTCTTAGCGTCAAAGCCCAGCACGCGGATGAAGGCTTCAGGA TACTCCTTGGCGCACTCTGCAATTTCACGCAGCACAGCAGCGGCATCTTGGCAGCCAAAC ATGGGCAGCTTCCACATCACCCAGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22573 |
Definition |
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis |
Align length |
54 |
Score (bit) |
86.7 |
E-value |
3.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921586|Adiantum capillus-veneris mRNA, clone: YMU001_000151_G08. (205 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 87 3e-17 sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 87 3e-17 sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 86 8e-17 sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 85 1e-16 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 84 2e-16 sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 84 2e-16 sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 84 2e-16 sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha... 84 2e-16 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 84 2e-16 sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 83 4e-16 sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 83 5e-16 sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha... 83 5e-16 sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 83 5e-16 sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai... 82 6e-16 sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 82 8e-16 sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 82 8e-16 sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 82 8e-16 sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha... 82 8e-16 sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 82 8e-16 sp|P16881|RBS_EUGGR Ribulose bisphosphate carboxylase small chai... 82 1e-15 sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15 sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15 sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15 sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15 sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15 sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15 sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 81 1e-15 sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai... 81 1e-15 sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha... 81 1e-15 sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha... 81 1e-15
>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1 Length = 179
Score = 86.7 bits (213), Expect = 3e-17 Identities = 38/54 (70%), Positives = 43/54 (79%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42 W MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 125 WTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1 Length = 179
Score = 86.7 bits (213), Expect = 3e-17 Identities = 38/54 (70%), Positives = 43/54 (79%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42 W MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 125 WTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1 Length = 179
Score = 85.5 bits (210), Expect = 8e-17 Identities = 37/54 (68%), Positives = 43/54 (79%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42 W MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V++P Sbjct: 125 WTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1 Length = 181
Score = 84.7 bits (208), Expect = 1e-16 Identities = 36/54 (66%), Positives = 42/54 (77%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42 W MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD RQVQ F+V KP Sbjct: 124 WTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177
>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1 Length = 171
Score = 84.3 bits (207), Expect = 2e-16 Identities = 36/54 (66%), Positives = 43/54 (79%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42 WVMWKLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GFD RQVQ F+V KP Sbjct: 117 WVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1 Length = 189
Score = 84.3 bits (207), Expect = 2e-16 Identities = 37/54 (68%), Positives = 42/54 (77%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42 WVMWKLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD RQVQ F+V KP Sbjct: 133 WVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1 Length = 182
Score = 84.3 bits (207), Expect = 2e-16 Identities = 34/54 (62%), Positives = 42/54 (77%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42 W MWKLPMFGC D++ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ KP Sbjct: 126 WTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179
>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1 Length = 179
Score = 84.0 bits (206), Expect = 2e-16 Identities = 37/54 (68%), Positives = 42/54 (77%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42 W MWKLPMFGC AA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP Sbjct: 125 WTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1 Length = 180
Score = 84.0 bits (206), Expect = 2e-16 Identities = 35/55 (63%), Positives = 41/55 (74%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39 W MWKLPMFGC D A VL E+ EC KEYP AFIR++GFD+ RQVQ F+ KP+ Sbjct: 124 WTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178
>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1 Length = 82
Score = 83.2 bits (204), Expect = 4e-16 Identities = 34/54 (62%), Positives = 41/54 (75%) Frame = -3
Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42 W MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP Sbjct: 23 WTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43110 |
Definition |
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata |
Align length |
55 |
Score (bit) |
105.0 |
E-value |
1.0e-21 |
Report |
|