BP921586
Clone id YMU001_000151_G08
Library
Length 205
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATGCCAACTAAATTGGCTTGCTTTAAGAAAGTTTAGACAGAGGGCTTCTGGACAAGGAAG
CCGGAGACCTGCACCTGCCTCTTAGCGTCAAAGCCCAGCACGCGGATGAAGGCTTCAGGA
TACTCCTTGGCGCACTCTGCAATTTCACGCAGCACAGCAGCGGCATCTTGGCAGCCAAAC
ATGGGCAGCTTCCACATCACCCAGT
■■Homology search results ■■ -
sp_hit_id O22573
Definition sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis
Align length 54
Score (bit) 86.7
E-value 3.0e-17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921586|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_G08.
(205 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 87 3e-17
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 87 3e-17
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 86 8e-17
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 85 1e-16
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 84 2e-16
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 84 2e-16
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 84 2e-16
sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha... 84 2e-16
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 84 2e-16
sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 83 4e-16
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 83 5e-16
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha... 83 5e-16
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 83 5e-16
sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai... 82 6e-16
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 82 8e-16
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 82 8e-16
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 82 8e-16
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha... 82 8e-16
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 82 8e-16
sp|P16881|RBS_EUGGR Ribulose bisphosphate carboxylase small chai... 82 1e-15
sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15
sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15
sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 82 1e-15
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 81 1e-15
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai... 81 1e-15
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha... 81 1e-15
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha... 81 1e-15

>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain
3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2
SV=1
Length = 179

Score = 86.7 bits (213), Expect = 3e-17
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
W MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP
Sbjct: 125 WTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain
2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2
SV=1
Length = 179

Score = 86.7 bits (213), Expect = 3e-17
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
W MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP
Sbjct: 125 WTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small chain
1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2
SV=1
Length = 179

Score = 85.5 bits (210), Expect = 8e-17
Identities = 37/54 (68%), Positives = 43/54 (79%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
W MWKLPMFGC DAA V++E AEC KEYP AFIRV+GFD RQVQ F+V++P
Sbjct: 125 WTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 84.7 bits (208), Expect = 1e-16
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
W MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD RQVQ F+V KP
Sbjct: 124 WTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
Length = 171

Score = 84.3 bits (207), Expect = 2e-16
Identities = 36/54 (66%), Positives = 43/54 (79%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
WVMWKLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GFD RQVQ F+V KP
Sbjct: 117 WVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
Length = 189

Score = 84.3 bits (207), Expect = 2e-16
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
WVMWKLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD RQVQ F+V KP
Sbjct: 133 WVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
Length = 182

Score = 84.3 bits (207), Expect = 2e-16
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
W MWKLPMFGC D++ VL+E+ EC K YP AFIR++GFD KRQVQ+ F+ KP
Sbjct: 126 WTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain
5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2
SV=1
Length = 179

Score = 84.0 bits (206), Expect = 2e-16
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
W MWKLPMFGC AA V++E AEC KEYP AFIRV+GFD RQVQ F+V+KP
Sbjct: 125 WTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
Length = 180

Score = 84.0 bits (206), Expect = 2e-16
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W MWKLPMFGC D A VL E+ EC KEYP AFIR++GFD+ RQVQ F+ KP+
Sbjct: 124 WTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain
(Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1
Length = 82

Score = 83.2 bits (204), Expect = 4e-16
Identities = 34/54 (62%), Positives = 41/54 (75%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
W MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 23 WTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 55
Score (bit) 105.0
E-value 1.0e-21
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921586|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_G08.
(205 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 105 1e-21
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 87 5e-16
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 87 5e-16
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 87 5e-16
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c... 87 5e-16
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 87 5e-16
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 87 5e-16
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 87 5e-16
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 87 5e-16
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 86 9e-16
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 86 9e-16
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 86 9e-16
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 86 1e-15
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 86 1e-15
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c... 86 1e-15
tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza... 86 1e-15
tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small c... 86 1e-15
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 86 1e-15
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 86 1e-15
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c... 86 1e-15
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c... 86 1e-15
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 85 2e-15
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 85 2e-15
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c... 85 2e-15
tr|Q14K75|Q14K75_PLAAC Ribulose bisphosphate carboxylase small c... 85 2e-15
tr|B8LPE7|B8LPE7_PICSI Putative uncharacterized protein OS=Picea... 85 2e-15
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 85 2e-15
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c... 85 2e-15
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c... 85 2e-15
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c... 85 2e-15

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 105 bits (261), Expect = 1e-21
Identities = 47/55 (85%), Positives = 52/55 (94%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W+MWKLPMFGC D+ +VLREIAECAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 119 WIMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
chain OS=Lactuca sativa PE=2 SV=1
Length = 181

Score = 86.7 bits (213), Expect = 5e-16
Identities = 36/54 (66%), Positives = 43/54 (79%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 42
W MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD+ RQVQ F+V KP
Sbjct: 124 WTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177


>tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_201189 PE=3 SV=1
Length = 182

Score = 86.7 bits (213), Expect = 5e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W MWKLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 128 WTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182


>tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_109367 PE=3 SV=1
Length = 182

Score = 86.7 bits (213), Expect = 5e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W MWKLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 128 WTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182


>tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_110675 PE=3 SV=1
Length = 182

Score = 86.7 bits (213), Expect = 5e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W MWKLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 128 WTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182


>tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233894 PE=3 SV=1
Length = 182

Score = 86.7 bits (213), Expect = 5e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W MWKLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 128 WTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182


>tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_106210 PE=3 SV=1
Length = 182

Score = 86.7 bits (213), Expect = 5e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W MWKLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 128 WTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 182


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_123666 PE=3 SV=1
Length = 181

Score = 86.7 bits (213), Expect = 5e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W MWKLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 127 WTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_115069 PE=3 SV=1
Length = 181

Score = 86.7 bits (213), Expect = 5e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W MWKLPMFGCQD+A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 127 WTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_146969 PE=3 SV=1
Length = 181

Score = 85.9 bits (211), Expect = 9e-16
Identities = 37/55 (67%), Positives = 43/55 (78%)
Frame = -3

Query: 203 WVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 39
W MWKLPMFGCQD A VLREI EC K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 127 WTMWKLPMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181