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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921589
Clone id YMU001_000151_G11
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000151_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAACAGGCTTGACGTCGCAGTGTTTTATCGAGGTCTTTGGAATATATTTCCTGCATGGGT
TCTCATTGATGGAGGTGGCGGCCATCTTGGTTCCAGTTCAGTGGGATCTATGTAAGTTCA
GTCACCTGTGCATATTTCGAGTATGTGATAGTTTCTCAATCCAAAGAACAGTCAGTTGGT
AACTATATCAAGCTGTGTAGACATGGCTCATCATTGGAAAACCATCCAGAGAGCATGAGA
TAAACCCATGTATTTGTAGGAGTCTCCATTATTGGCCCAAATTTTGCTGTCTTTGCAGAT
CATTCTCTGTTGTAAGGTCCTGAATGTTTAAAGACGGGCGTACTTGGCTTCTGGCTTGCA
CCAGATTAACGCAGGTTAAGGTGTCTGGATGGAACCAAAGGAATTCATTTTCAGAGAGTT
TGTGAAGGTCACTCATTTTCAACTTTTTATGGAGTGACTGACCTCATGCAAATCATACCT
TCATCATATAGACTATTCAGTGTACTGATTCCTAATCTGC
■■Homology search results ■■ -
sp_hit_id Q5HWE6
Definition sp|Q5HWE6|EX7L_CAMJR Exodeoxyribonuclease 7 large subunit OS=Campylobacter jejuni (strain RM1221)
Align length 83
Score (bit) 30.0
E-value 6.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921589|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_G11.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5HWE6|EX7L_CAMJR Exodeoxyribonuclease 7 large subunit OS=Cam...    30   6.9  
sp|A1VY44|EX7L_CAMJJ Exodeoxyribonuclease 7 large subunit OS=Cam...    30   6.9  
sp|Q1DHH9|UTP10_COCIM U3 small nucleolar RNA-associated protein ...    30   8.8  

>sp|Q5HWE6|EX7L_CAMJR Exodeoxyribonuclease 7 large subunit
           OS=Campylobacter jejuni (strain RM1221) GN=xseA PE=3
           SV=1
          Length = 387

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 25/83 (30%), Positives = 41/83 (49%)
 Frame = +1

Query: 22  VLSRSLEYISCMGSH*WRWRPSWFQFSGIYVSSVTCAYFEYVIVSQSKEQSVGNYIKLCR 201
           VLS  +  I+  GS  W     +F       SS+ CA F+   +    + +VGN+++LC 
Sbjct: 22  VLSGEISKITLHGSGHW-----YFDLKDER-SSIACAMFKGANLKVGFKPAVGNFLELC- 74

Query: 202 HGSSLENHPESMR*THVFVGVSI 270
              S+  +PES R  + F+  S+
Sbjct: 75  --GSVSLYPESGR--YQFIATSM 93


>sp|A1VY44|EX7L_CAMJJ Exodeoxyribonuclease 7 large subunit
           OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176) GN=xseA PE=3 SV=1
          Length = 387

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 25/83 (30%), Positives = 41/83 (49%)
 Frame = +1

Query: 22  VLSRSLEYISCMGSH*WRWRPSWFQFSGIYVSSVTCAYFEYVIVSQSKEQSVGNYIKLCR 201
           VLS  +  I+  GS  W     +F       SS+ CA F+   +    + +VGN+++LC 
Sbjct: 22  VLSGEISKITLHGSGHW-----YFDLKDER-SSIACAMFKGANLKVGFKPAVGNFLELC- 74

Query: 202 HGSSLENHPESMR*THVFVGVSI 270
              S+  +PES R  + F+  S+
Sbjct: 75  --GSVSLYPESGR--YQFIATSM 93


>sp|Q1DHH9|UTP10_COCIM U3 small nucleolar RNA-associated protein 10
            OS=Coccidioides immitis GN=UTP10 PE=3 SV=1
          Length = 1682

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -3

Query: 245  VYLMLSGWFSNDEPCLHSLI*LPTDCSLD*ETITYSKYAQVTELT 111
            V+ M +  +S D+  L ++  L +DC+ + + ITY++Y  + + T
Sbjct: 990  VFAMFANRYSMDKDVLATMTALASDCNAELQLITYARYLNLVKDT 1034
tr_hit_id B6K0N2
Definition tr|B6K0N2|B6K0N2_SCHJP Glucosidase OS=Schizosaccharomyces japonicus yFS275
Align length 78
Score (bit) 35.4
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921589|Adiantum capillus-veneris mRNA, clone:
YMU001_000151_G11.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6K0N2|B6K0N2_SCHJP Glucosidase OS=Schizosaccharomyces japoni...    35   1.7  

>tr|B6K0N2|B6K0N2_SCHJP Glucosidase OS=Schizosaccharomyces japonicus
           yFS275 GN=SJAG_02590 PE=4 SV=1
          Length = 628

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -1

Query: 430 DLHKLSENEFLWFHPDTLTCVNLVQARSQVRPSLNIQ-DLTTENDLQRQQNLGQ*WRLLQ 254
           D+H  + N++ W+ PD +T  N          SL ++ D+  E+DL  +  + Q W  L 
Sbjct: 265 DIHYAATNDYEWYDPDAVTTAN---------GSLRLRMDMFAEHDLNLRSGMLQSWNKLC 315

Query: 253 IHG---FISCSLDGFPMM 209
             G    +S SL G P M
Sbjct: 316 FKGGVFEVSASLGGKPEM 333