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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921609
Clone id YMU001_000152_A11
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGAAAAGAGGAAGGAAAGCTTAAAGCGGGTTGCTATCAGAAGTTTTCCTGAAAAAACTT
AACAGGCTATTCAGAACTGAAATTCGCTAGTTAAAGGTACAGCAAGCTGGAGGGAATGGT
TGAAGTGCTGTTCTTGTGAATATGCTGACTTGAAATGAAGTGGTCACTAAGGCAAGCACA
GAGAGTGTGTGAGTTGTCACTTGACCCACACAATCCAATGGCCGTGGCGGATACAGGACA
GCACAGAAAGTGTGTTTCACGATGTGGATAAGGGAGGGGATAAGCTAAGGCAATTTGTAA
CAGTGTATCCTAGAACGTGCATGATTTGTATAGTTGTCGTCGACCTTTGTGCTCAACATG
AAGGTTGCAAGTTGGTCTAGAAAGTTAAACAGTGCTTGCGGTTTCAGCGTCATGATCGCA
AGTTTGTAGAAATGAGTGTCTTGGAGGGTTTTTGTCGCAAGGCAGGGGTTAGCTCCTGCT
CCAGATGTCATCTCTAGACTTCTCTATACCTACCCCCTCACTACTGTAA
■■Homology search results ■■ -
sp_hit_id Q2QYL3
Definition sp|Q2QYL3|NLTP3_ORYSJ Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica
Align length 45
Score (bit) 30.8
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921609|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_A11.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2QYL3|NLTP3_ORYSJ Non-specific lipid-transfer protein 3 OS=O...    31   3.8  
sp|A2ZAS9|NLTP3_ORYSI Non-specific lipid-transfer protein 3 OS=O...    31   3.8  
sp|O54908|DKK1_MOUSE Dickkopf-related protein 1 OS=Mus musculus ...    30   5.0  

>sp|Q2QYL3|NLTP3_ORYSJ Non-specific lipid-transfer protein 3
           OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1
          Length = 121

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 225 CCPVSATAIGLCGSSDNSHTLCACLSDHFISSQHIHKNSTSTIPS 91
           CC    T  G   SS +  T C+CL +   S ++++  + ++IPS
Sbjct: 57  CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPS 101


>sp|A2ZAS9|NLTP3_ORYSI Non-specific lipid-transfer protein 3
           OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1
          Length = 121

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 225 CCPVSATAIGLCGSSDNSHTLCACLSDHFISSQHIHKNSTSTIPS 91
           CC    T  G   SS +  T C+CL +   S ++++  + ++IPS
Sbjct: 57  CCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPS 101


>sp|O54908|DKK1_MOUSE Dickkopf-related protein 1 OS=Mus musculus
           GN=Dkk1 PE=2 SV=1
          Length = 272

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 282 LQIALAYPLPYPHRETHFLCCPVSATAIGLCGSSDNSH 169
           +QI LA         TH +CCP +    G+C  SD+SH
Sbjct: 111 VQICLACRKRRKRCMTHAMCCPGNYCKNGICMPSDHSH 148
tr_hit_id Q6PYY7
Definition tr|Q6PYY7|Q6PYY7_OSTTA DPE1 OS=Ostreococcus tauri
Align length 50
Score (bit) 34.7
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921609|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_A11.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6PYY7|Q6PYY7_OSTTA DPE1 OS=Ostreococcus tauri GN=dpe1 PE=4 SV=1    35   2.7  
tr|A7T053|A7T053_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   4.8  
tr|A8B3M8|A8B3M8_GIALA Putative uncharacterized protein OS=Giard...    33   8.0  

>tr|Q6PYY7|Q6PYY7_OSTTA DPE1 OS=Ostreococcus tauri GN=dpe1 PE=4 SV=1
          Length = 601

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +3

Query: 201 WPWRIQDSTESVFHDVDKGGDKLRQFVTVYPRTCMICIVVVDLCAQHEGC 350
           WPWRI +    VF  +D   DKL    TVY R     + VVD  ++ + C
Sbjct: 540 WPWRIGEP--GVFATLDAEADKLASLATVYDR-----VAVVDDSSRRDAC 582


>tr|A7T053|A7T053_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g139926 PE=4 SV=1
          Length = 476

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 140 KWSLRQAQRVCELSLDPHNPMAVADTGQHRKCVSRCG*GRG*AKAICNSVS*NVHD---L 310
           +WS  +  R C+L   P  P     TG  R+C + CG G+      C +   NVH    +
Sbjct: 296 QWSRLKVTRPCQLP--PCPPPNEWKTGPWRQCSANCGQGKQTRIVFCTNEVRNVHQQVPI 353

Query: 311 YSCR 322
           Y+CR
Sbjct: 354 YNCR 357


>tr|A8B3M8|A8B3M8_GIALA Putative uncharacterized protein OS=Giardia
            lamblia ATCC 50803 GN=GL50803_24734 PE=4 SV=1
          Length = 1853

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -3

Query: 428  LQDTHFYKLAIMTLKPQALFNFLDQLATFMLSTKVDDNYTNHARS 294
            +Q   F+ L I  L  Q  F FLD  A  MLS  V  NYT+ + S
Sbjct: 913  VQKAAFFLLCIHALAKQLQFYFLDSAAVQMLSILVPQNYTSSSGS 957