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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921610
Clone id YMU001_000152_A12
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTAGTTGAATAGAGCCTGCCAAAAGACGCGGCGCACAAAGCTAGCACACCAAGACCTA
GCCGGTGTATGAAGAAAAACGTGAATGAAACAAGCTGGAGAGCAAGCACATAGCCTGTCA
AGAAAAGGGCAAGCCCAACACAGGGGCGCCTAGGGATGAATGGGAGCGATCCAGTACAGG
TAATGAAGCGGAGCGAGTCGAAGCACTTAAGCGTATCTAGGCGCCTTATTAGGCGCCCAA
GGTCAACCTAATCCTGCATTCAGTCCTCCAGTCGAAGCTCTCACCTCTTTTGCCTAGCAT
GGTGATCAACACCTTCTATGCTCTCAGCCGCGCAGGTCGGCACCTTTCTCTGCTTGCAGG
TCGCGACACCTGCAGCCTCTCCAGATTGCGTGCCTCTTGCAATGCTATATCAAAAGCATC
AAGCAGCTACTGTCCCCACTCGGTGACCTCCTTCCTTAGGCTCTCGGCCTTGATTCTCCC
TAGCCTTGACAGCCCCCCTTTCAGCTTCTGCAGCCCATCCACACCCTTCAATCCGCTGCT
CTCCTGTCACATACAAGCTTGATGGCCTCCCTGCTGTAGCCTGTGAGCTCGCT
■■Homology search results ■■ -
sp_hit_id Q04322
Definition sp|Q04322|YM52_YEAST TBC domain-containing protein YMR192W OS=Saccharomyces cerevisiae
Align length 135
Score (bit) 30.4
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921610|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_A12.
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04322|YM52_YEAST TBC domain-containing protein YMR192W OS=Sa...    30   7.0  
sp|A4G8J0|UPPP_HERAR Undecaprenyl-diphosphatase OS=Herminiimonas...    30   7.0  
sp|Q7T3E4|DBR1_DANRE Lariat debranching enzyme OS=Danio rerio GN...    30   9.1  

>sp|Q04322|YM52_YEAST TBC domain-containing protein YMR192W
           OS=Saccharomyces cerevisiae GN=YMR192W PE=1 SV=1
          Length = 720

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 18/135 (13%)
 Frame = +2

Query: 119 QEKGKPNTGAPRDEWERSSTGNEAERVEALKRI*APY*APKVNLILH--SVLQSKLSPLL 292
           +E+ +  T  P D+  +     E++  EALKRI +P   P+ + I    S L+S L P+L
Sbjct: 90  REESQSKTILPSDDLSQQLETEESKVEEALKRITSPPLPPRADCIEESASALKSSLPPVL 149

Query: 293 ----------------PSMVINTFYALSRAGRHLSLLAGRDTCSLSRLRASCNAISKASS 424
                           P  V+N          HL    G  T S S   A  N+ S    
Sbjct: 150 AGNKNDQAPLDRPQLPPRQVVNA------ETLHLKAPHGNATPSKSPTSAVGNSSSSTPP 203

Query: 425 SYCPHSVTSFLRLSA 469
           +  P  +   L L+A
Sbjct: 204 TLPPRRIEDPLDLAA 218


>sp|A4G8J0|UPPP_HERAR Undecaprenyl-diphosphatase OS=Herminiimonas
           arsenicoxydans GN=uppP PE=3 SV=1
          Length = 277

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -2

Query: 169 SLPFIPRRPCVGLALFLTGYVLALQLV------SFTFFFIHRLGLGVLALCAASFG 20
           S+  IP     GLA F + ++    L+       FTFF  +R+G G+  L +A +G
Sbjct: 216 SMADIPLFGLGGLAAFFSAFLCVRWLLRYISTHDFTFFAYYRIGFGLFVLLSAHYG 271


>sp|Q7T3E4|DBR1_DANRE Lariat debranching enzyme OS=Danio rerio
           GN=dbr1 PE=1 SV=1
          Length = 568

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 21  PKDAAHKASTPRPSRCMKKNVNETSWRAST*PVKKRAS--PTQGRLGMNGSDPVQVMKRS 194
           P  +  + S P PS C+ +  +E     +   V KR S   TQ   G  G  P Q+ +R+
Sbjct: 496 PLHSLPRLSLPPPSACVSQGSSEEEGAFTAARVPKRTSGETTQSSAGQTGGTP-QIKRRN 554

Query: 195 ESKHLSV 215
           +S + +V
Sbjct: 555 QSIYTAV 561
tr_hit_id Q7U2H9
Definition tr|Q7U2H9|Q7U2H9_MYCBO PROBABLE CONSERVED TRANSMEMBRANE PROTEIN OS=Mycobacterium bovis
Align length 84
Score (bit) 37.0
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921610|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_A12.
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7U2H9|Q7U2H9_MYCBO PROBABLE CONSERVED TRANSMEMBRANE PROTEIN ...    37   0.85 
tr|P96418|P96418_MYCTU PROBABLE CONSERVED TRANSMEMBRANE PROTEIN ...    37   0.85 
tr|A5TYW0|A5TYW0_MYCTA Putative conserved transmembrane protein ...    37   0.85 
tr|A1KF55|A1KF55_MYCBP Probable conserved transmembrane protein ...    37   0.85 
tr|A4KNQ4|A4KNQ4_MYCTU Conserved transmembrane protein OS=Mycoba...    37   0.85 
tr|A1QN12|A1QN12_MYCTF Putative uncharacterized protein (Conserv...    37   0.85 
tr|A2U5H8|A2U5H8_BACCO MATE efflux family protein OS=Bacillus co...    35   3.2  
tr|Q93Z20|Q93Z20_ARATH At1g62200/F19K23_13 OS=Arabidopsis thalia...    35   4.2  
tr|O04585|O04585_ARATH F19K23.13 protein OS=Arabidopsis thaliana...    35   4.2  

>tr|Q7U2H9|Q7U2H9_MYCBO PROBABLE CONSERVED TRANSMEMBRANE PROTEIN
           OS=Mycobacterium bovis GN=Mb0240c PE=4 SV=1
          Length = 482

 Score = 37.0 bits (84), Expect = 0.85
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -1

Query: 248 G*PWAPNKAPRYA*VLRLAPLH----YLYWIAPIHP*APLCWACPFLDRLCACSPACFIH 81
           G P  P + PR     + AP H    +L W A I P   L W  PFL+RL    PA  + 
Sbjct: 369 GKPGDPRRLPR-----QWAPYHLRLDWLMWFAAISPGYALPWMTPFLNRLLRNDPAT-LK 422

Query: 80  VFLHTPARSWCASFVRRVFWQALF 9
           +  H P       +VR   +Q  F
Sbjct: 423 LLRHNPFPQSPPRYVRAQLYQYRF 446


>tr|P96418|P96418_MYCTU PROBABLE CONSERVED TRANSMEMBRANE PROTEIN
           OS=Mycobacterium tuberculosis GN=MT0246 PE=4 SV=1
          Length = 482

 Score = 37.0 bits (84), Expect = 0.85
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -1

Query: 248 G*PWAPNKAPRYA*VLRLAPLH----YLYWIAPIHP*APLCWACPFLDRLCACSPACFIH 81
           G P  P + PR     + AP H    +L W A I P   L W  PFL+RL    PA  + 
Sbjct: 369 GKPGDPRRLPR-----QWAPYHLRLDWLMWFAAISPGYALPWMTPFLNRLLRNDPAT-LK 422

Query: 80  VFLHTPARSWCASFVRRVFWQALF 9
           +  H P       +VR   +Q  F
Sbjct: 423 LLRHNPFPQSPPRYVRAQLYQYRF 446


>tr|A5TYW0|A5TYW0_MYCTA Putative conserved transmembrane protein
           OS=Mycobacterium tuberculosis (strain ATCC 25177 /
           H37Ra) GN=MRA_0243 PE=4 SV=1
          Length = 482

 Score = 37.0 bits (84), Expect = 0.85
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -1

Query: 248 G*PWAPNKAPRYA*VLRLAPLH----YLYWIAPIHP*APLCWACPFLDRLCACSPACFIH 81
           G P  P + PR     + AP H    +L W A I P   L W  PFL+RL    PA  + 
Sbjct: 369 GKPGDPRRLPR-----QWAPYHLRLDWLMWFAAISPGYALPWMTPFLNRLLRNDPAT-LK 422

Query: 80  VFLHTPARSWCASFVRRVFWQALF 9
           +  H P       +VR   +Q  F
Sbjct: 423 LLRHNPFPQSPPRYVRAQLYQYRF 446


>tr|A1KF55|A1KF55_MYCBP Probable conserved transmembrane protein
           OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2)
           GN=BCG_0272c PE=4 SV=1
          Length = 482

 Score = 37.0 bits (84), Expect = 0.85
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -1

Query: 248 G*PWAPNKAPRYA*VLRLAPLH----YLYWIAPIHP*APLCWACPFLDRLCACSPACFIH 81
           G P  P + PR     + AP H    +L W A I P   L W  PFL+RL    PA  + 
Sbjct: 369 GKPGDPRRLPR-----QWAPYHLRLDWLMWFAAISPGYALPWMTPFLNRLLRNDPAT-LK 422

Query: 80  VFLHTPARSWCASFVRRVFWQALF 9
           +  H P       +VR   +Q  F
Sbjct: 423 LLRHNPFPQSPPRYVRAQLYQYRF 446


>tr|A4KNQ4|A4KNQ4_MYCTU Conserved transmembrane protein
           OS=Mycobacterium tuberculosis str. Haarlem GN=TBHG_00235
           PE=4 SV=1
          Length = 482

 Score = 37.0 bits (84), Expect = 0.85
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -1

Query: 248 G*PWAPNKAPRYA*VLRLAPLH----YLYWIAPIHP*APLCWACPFLDRLCACSPACFIH 81
           G P  P + PR     + AP H    +L W A I P   L W  PFL+RL    PA  + 
Sbjct: 369 GKPGDPRRLPR-----QWAPYHLRLDWLMWFAAISPGYALPWMTPFLNRLLRNDPAT-LK 422

Query: 80  VFLHTPARSWCASFVRRVFWQALF 9
           +  H P       +VR   +Q  F
Sbjct: 423 LLRHNPFPQSPPRYVRAQLYQYRF 446


>tr|A1QN12|A1QN12_MYCTF Putative uncharacterized protein (Conserved
           transmembrane protein) OS=Mycobacterium tuberculosis
           (strain F11) GN=TBFG_00234 PE=4 SV=1
          Length = 482

 Score = 37.0 bits (84), Expect = 0.85
 Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = -1

Query: 248 G*PWAPNKAPRYA*VLRLAPLH----YLYWIAPIHP*APLCWACPFLDRLCACSPACFIH 81
           G P  P + PR     + AP H    +L W A I P   L W  PFL+RL    PA  + 
Sbjct: 369 GKPGDPRRLPR-----QWAPYHLRLDWLMWFAAISPGYALPWMTPFLNRLLRNDPAT-LK 422

Query: 80  VFLHTPARSWCASFVRRVFWQALF 9
           +  H P       +VR   +Q  F
Sbjct: 423 LLRHNPFPQSPPRYVRAQLYQYRF 446


>tr|A2U5H8|A2U5H8_BACCO MATE efflux family protein OS=Bacillus
           coagulans 36D1 GN=BcoaDRAFT_2602 PE=4 SV=1
          Length = 470

 Score = 35.0 bits (79), Expect = 3.2
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 148 RPCVGLALFLTGYVLALQLVSFTFFFIHRLGLGVLALCAASFGRLYS 8
           +PC+GL+LF+      L +V  T F +  +GL    LCA  FG + S
Sbjct: 185 KPCLGLSLFMNLTNTVLNVVFITIFHMGVVGLVTSILCARIFGMIAS 231


>tr|Q93Z20|Q93Z20_ARATH At1g62200/F19K23_13 OS=Arabidopsis thaliana
           GN=At1g62200 PE=2 SV=1
          Length = 590

 Score = 34.7 bits (78), Expect = 4.2
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 202 FDSLRFITCTGSLPFIPRRPCVGLALFLTGYVLALQ-LVSFTFFFIHRLGLGVLALCAAS 26
           F  +  +T + SLP +    C G+A  L      +Q  V FT  ++  LG G +  C +S
Sbjct: 135 FIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSS 194

Query: 25  FG 20
           FG
Sbjct: 195 FG 196


>tr|O04585|O04585_ARATH F19K23.13 protein OS=Arabidopsis thaliana
           GN=F19K23.13 PE=4 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 4.2
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 202 FDSLRFITCTGSLPFIPRRPCVGLALFLTGYVLALQ-LVSFTFFFIHRLGLGVLALCAAS 26
           F  +  +T + SLP +    C G+A  L      +Q  V FT  ++  LG G +  C +S
Sbjct: 120 FIGMALLTLSASLPVLKPAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSS 179

Query: 25  FG 20
           FG
Sbjct: 180 FG 181