BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921617|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_B09.
         (176 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NG57|ELOA3_HUMAN RNA polymerase II transcription factor SII...    31   1.7  
sp|A6NLF2|EA3L2_HUMAN RNA polymerase II transcription factor SII...    31   1.7  
sp|Q3SY89|EA3L1_HUMAN RNA polymerase II transcription factor SII...    31   1.7  
sp|O35126|ATN1_MOUSE Atrophin-1 OS=Mus musculus GN=Atn1 PE=1 SV=1      30   3.7  
sp|P39769|PHP_DROME Polyhomeotic-proximal chromatin protein OS=D...    29   6.3  
sp|P54259|ATN1_HUMAN Atrophin-1 OS=Homo sapiens GN=ATN1 PE=1 SV=2      29   6.3  
sp|P54258|ATN1_RAT Atrophin-1 OS=Rattus norvegicus GN=Atn1 PE=2 ...    29   8.3  

>sp|Q8NG57|ELOA3_HUMAN RNA polymerase II transcription factor SIII
           subunit A3 OS=Homo sapiens GN=TCEB3C PE=1 SV=1
          Length = 546

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 23  DREPPVEKHGSSQAPTDLGSLEGSHIAAQGSS----APGD 130
           + EP  +  GSSQAP+ LG  +G  ++  GSS    AP D
Sbjct: 479 EMEPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPAD 518


>sp|A6NLF2|EA3L2_HUMAN RNA polymerase II transcription factor SIII
           subunit A3-like-2 OS=Homo sapiens GN=TCEB3CL2 PE=3 SV=1
          Length = 546

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 23  DREPPVEKHGSSQAPTDLGSLEGSHIAAQGSS----APGD 130
           + EP  +  GSSQAP+ LG  +G  ++  GSS    AP D
Sbjct: 479 EMEPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPAD 518


>sp|Q3SY89|EA3L1_HUMAN RNA polymerase II transcription factor SIII
           subunit A3-like-1 OS=Homo sapiens GN=TCEB3CL PE=2 SV=1
          Length = 546

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +2

Query: 23  DREPPVEKHGSSQAPTDLGSLEGSHIAAQGSS----APGD 130
           + EP  +  GSSQAP+ LG  +G  ++  GSS    AP D
Sbjct: 479 EMEPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHAAPAD 518


>sp|O35126|ATN1_MOUSE Atrophin-1 OS=Mus musculus GN=Atn1 PE=1 SV=1
          Length = 1175

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 17  APDREPPVEKHGSSQAPTDLGSLEGSHIAAQGSSAPGDV 133
           AP +    ++    Q+P+DL SL+G  I   GSS P D+
Sbjct: 86  APKKTKTEQELPRPQSPSDLDSLDGRSINDDGSSDPRDI 124


>sp|P39769|PHP_DROME Polyhomeotic-proximal chromatin protein
            OS=Drosophila melanogaster GN=ph-p PE=1 SV=2
          Length = 1589

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 156  TTPCVGSCTSPGAEDP*AAICEPSKE-PKSVGA*DEPCFSTGGSRSGALST 7
            +TP  G+ T+P ++   AA+  PS   P SV   +EP  +T GS + A ST
Sbjct: 1191 STPSKGA-TTPTSKQSNAAVQPPSSTTPNSVSGKEEPKLATCGSLTSATST 1240


>sp|P54259|ATN1_HUMAN Atrophin-1 OS=Homo sapiens GN=ATN1 PE=1 SV=2
          Length = 1185

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 17  APDREPPVEKHGSSQAPTDLGSLEGSHIAAQGSSAPGDV 133
           AP +    ++    Q+P+DL SL+G  +   GSS P D+
Sbjct: 86  APKKTKTEQELPRPQSPSDLDSLDGRSLNDDGSSDPRDI 124


>sp|P54258|ATN1_RAT Atrophin-1 OS=Rattus norvegicus GN=Atn1 PE=2
           SV=1
          Length = 1183

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 59  QAPTDLGSLEGSHIAAQGSSAPGDV 133
           Q+P+DL SL+G  I   GSS P D+
Sbjct: 99  QSPSDLDSLDGRSINDDGSSDPRDI 123

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921617|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_B09.
         (176 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0S0I1|Q0S0I1_RHOSR Putative uncharacterized protein OS=Rhodo...    33   5.4  

>tr|Q0S0I1|Q0S0I1_RHOSR Putative uncharacterized protein
           OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro07191 PE=4
           SV=1
          Length = 481

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 11  DRAPDREPPVEKHGSSQAPTDLGSLEGSHIAAQGSSAPGDVQL 139
           DR PDR+P    HG+   PT  G   GS   A   +A  +V L
Sbjct: 271 DRGPDRKPGQLSHGTGSTPTYFGPSTGSDFVAIVDNADPEVSL 313