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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921621
Clone id YMU001_000152_C01
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAG
GCGCAGCAGTTGACTAGACCATCTAGGGGTAAAGCACCGTTCCGGTGCGGGCTGCGAGAG
CGGTACCAAATCGAGGCAAACTCTGAATACTAGATGTAACGTGCAAGTAAAAGGAACGAA
GGAAAAGGGTCAACCAGTGAGACGATGAGGGATAAGCTTCACCGTCGAGAGGGGAACAGC
CCAGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGGTAAAGGAGGTAGGAGTGCAA
AGACAGGCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACT
GATCAAGCGCTCTTGCGCCGAAGATGAGCGGGACTAAGCGGTCTGCCGAAGCTGTGGGAT
GTCAAAAAACATCGGTAGGGGAGCGTTCCGCCCCAGATGGAAGCACCAGTGCGAGCAGGT
GTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAA
TGCCC
■■Homology search results ■■ -
sp_hit_id Q8N819
Definition sp|Q8N819|PPMBL_HUMAN Probable protein phosphatase 1B-like OS=Homo sapiens
Align length 57
Score (bit) 32.3
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921621|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_C01.
         (524 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N819|PPMBL_HUMAN Probable protein phosphatase 1B-like OS=Ho...    32   1.4  
sp|Q3UG20|MLL5_MOUSE Histone-lysine N-methyltransferase MLL5 OS=...    32   1.8  
sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus GN=MNCb...    32   2.4  
sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protei...    30   5.3  
sp|P28329|CLAT_HUMAN Choline O-acetyltransferase OS=Homo sapiens...    30   7.0  
sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16 OS=Asper...    30   9.1  

>sp|Q8N819|PPMBL_HUMAN Probable protein phosphatase 1B-like OS=Homo
           sapiens PE=2 SV=2
          Length = 430

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = +3

Query: 147 ILDVTCK*KERRKRVNQ*DDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKTGRRF 317
           +L   CK KER K   + ++E  A     E PRS   AP+      GG  A  G RF
Sbjct: 11  LLWTACKKKEREKEGREEEEEEEAGRRAPEGPRSLLTAPRRAQRPHGGAEASGGLRF 67


>sp|Q3UG20|MLL5_MOUSE Histone-lysine N-methyltransferase MLL5 OS=Mus
            musculus GN=Mll5 PE=2 SV=2
          Length = 1868

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 363  SSALAPKMSGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGS 497
            + +LAP +S      +A G + TS  E  +PD S S S+  + GS
Sbjct: 1320 AQSLAPSLSELMADPDAEGTEATSTSECPSPDTSQSPSKTSKPGS 1364


>sp|Q80WV7|SRR2L_MOUSE SRRM2-like protein OS=Mus musculus
           GN=MNCb-4760 PE=2 SV=1
          Length = 648

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +3

Query: 222 PSRGEQPRSPAKAPK*PLSGKGGRSA-KTGRRFA*KQPPLKECVIAH*SSALAPKMSGTK 398
           P+RG+  +SP  AP     G+GGR+A  T RR   ++   +       SSA AP+  G +
Sbjct: 354 PARGKDSQSPRSAPS--SQGRGGRAAGGTARRRRRRRRRRRSR-----SSANAPRRRGRR 406

Query: 399 RSAEAV--GCQKTSVGERSAPDGSTSA 473
           R+  A   G  ++  G  S+ D    A
Sbjct: 407 RTKPAPPRGSSRSLSGAHSSSDSGGGA 433


>sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protein
           1-B OS=Danio rerio GN=dmbx1b PE=2 SV=1
          Length = 369

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +3

Query: 171 KERRKRVNQ*DDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKTGRRFA*KQPPLKECV 350
           KE+ +R+ +   EG     + E P   A+AP  PL G+G  SA +             C 
Sbjct: 130 KEQLQRLKEAGTEGAQDEGKEEAPPVEAQAPPSPLDGRGLTSAPS-------------CE 176

Query: 351 IAH*SSALAPKMSGTKRSAE 410
           +    +  +P+ SG +  AE
Sbjct: 177 LNEEVNVTSPEQSGAESGAE 196


>sp|P28329|CLAT_HUMAN Choline O-acetyltransferase OS=Homo sapiens
           GN=CHAT PE=1 SV=3
          Length = 748

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 473 RTGASIWGGTLPYRCFLTSHSFGRPLSPAHLRRKSA*SVSYYALFQGWLLLG 318
           R  AS+  G L Y+  L SHS     +   L  +      YY LF  + L G
Sbjct: 233 RFAASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPG 284


>sp|Q2U968|SEC16_ASPOR COPII coat assembly protein sec16
            OS=Aspergillus oryzae GN=sec16 PE=3 SV=1
          Length = 1843

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 7/116 (6%)
 Frame = +3

Query: 171  KERRKRVNQ*DDEG*ASPSRGEQPRSPAKAPK*PLSGKGGRSAKTGRRFA*KQPPLKECV 350
            KE +K VN+ D    AS SRG  P   A AP    SG     A +       +PP     
Sbjct: 1699 KELKKWVNKKDPNS-ASVSRGTPPPPKASAPSRSASGSTAPPAASMGLGLDSRPPSSAGA 1757

Query: 351  IAH*SSALAPK-------MSGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGS 497
                SS+ AP        M GT RSA       T     S P     A+    + S
Sbjct: 1758 PPSLSSSPAPPSLAAPPPMLGTARSASTSAAMPTPPIGSSLPPPPRPATSLSNASS 1813
tr_hit_id A6N1H4
Definition tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa subsp. indica
Align length 114
Score (bit) 135.0
E-value 2.0e-30
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921621|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_C01.
         (524 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa s...   135   2e-30
tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medic...   124   2e-27
tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b ...    62   5e-18
tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1            87   4e-16
tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Popul...    51   1e-13
tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein OS=Deino...    72   2e-11
tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein OS=Deino...    72   2e-11
tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whol...    47   9e-11
tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein OS=Burkh...    61   3e-08
tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69 ...    59   1e-07
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    55   2e-06
tr|A7QY24|A7QY24_VITVI Chromosome undetermined scaffold_237, who...    38   1e-04
tr|A7PNG2|A7PNG2_VITVI Chromosome chr1 scaffold_22, whole genome...    44   0.005
tr|A1HM07|A1HM07_9FIRM Putative uncharacterized protein OS=Therm...    40   0.054
tr|A5B6Y9|A5B6Y9_VITVI Photosystem I P700 chlorophyll A apoprote...    38   0.27 
tr|Q6AV58|Q6AV58_ORYSJ Putative uncharacterized protein OSJNBb01...    37   0.46 
tr|A8LKH8|A8LKH8_DINSH H+transporting two-sector ATPase B/B' sub...    37   0.60 
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    36   1.0  
tr|B1BE08|B1BE08_CLOBO Putative uncharacterized protein OS=Clost...    36   1.3  
tr|B1BC32|B1BC32_CLOBO Putative uncharacterized protein OS=Clost...    36   1.3  
tr|Q0MX19|Q0MX19_ARAHY Leucine rich protein OS=Arachis hypogaea ...    36   1.3  
tr|B5GYY5|B5GYY5_STRCL Putative uncharacterized protein OS=Strep...    30   6.3  
tr|B4VCZ3|B4VCZ3_9ACTO Putative uncharacterized protein OS=Strep...    30   6.3  
tr|B5J1X7|B5J1X7_9RHOB ATP synthase B/B' CF(0) superfamily OS=Oc...    33   6.6  
tr|B5GFB2|B5GFB2_9ACTO Predicted protein OS=Streptomyces sp. SPB...    30   8.1  
tr|Q2CDQ4|Q2CDQ4_9RHOB FoF1 ATP synthase, subunit B OS=Oceanicol...    33   8.6  
tr|A3JNA5|A3JNA5_9RHOB FoF1 ATP synthase, subunit B OS=Rhodobact...    33   8.6  

>tr|A6N1H4|A6N1H4_ORYSI Retrotransposon protein OS=Oryza sativa
           subsp. indica PE=4 SV=1
          Length = 109

 Score =  135 bits (339), Expect = 2e-30
 Identities = 75/114 (65%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
 Frame = +1

Query: 13  MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRE--RYQIEANSEY*M*RASKRNEGK 186
           MPLEPRASWFSPKCVEAQQLT     K  F  G     + +   N+ Y       +  G 
Sbjct: 1   MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRY-----DPKITGV 55

Query: 187 GSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQAGGLPRSSHP*KSA 348
            S SETM DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQ GGLPRSSHP KSA
Sbjct: 56  RSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA 109


>tr|B7FGU0|B7FGU0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 102

 Score =  124 bits (312), Expect = 2e-27
 Identities = 70/110 (63%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +1

Query: 13  MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRE--RYQIEANSEY*M*RASKRNEGK 186
           MPLEPRASWFSPKCVEAQQLT     K  F  G     + +   N+ Y            
Sbjct: 1   MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGRESGTKSRQTLNTRYPW--------RV 52

Query: 187 GSTSETMRDKLHRREGNSPDHQLRPLNDRSVVKEVGVQRQAGGLPRSSHP 336
            S SE M DKLHRREGNSPDHQLRPLNDRSV+KEVGVQRQ GGLPRSSHP
Sbjct: 53  KSASEAMGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHP 102


>tr|Q5M9Z9|Q5M9Z9_TOBAC Putative uncharacterized protein orf106b
           OS=Nicotiana tabacum GN=orf106b PE=4 SV=1
          Length = 106

 Score = 62.0 bits (149), Expect(2) = 5e-18
 Identities = 31/47 (65%), Positives = 35/47 (74%)
 Frame = -3

Query: 222 VKLIPHRLTG*PFSFVPFTCTLHLVFRVCLDLVPLSQPAPERCFTPR 82
           +KLIPHRLT  P    P     +LVFRVCLDLVPLS+PAP+ CFTPR
Sbjct: 1   MKLIPHRLTSRPCP--PLILRSYLVFRVCLDLVPLSRPAPKPCFTPR 45



 Score = 52.8 bits (125), Expect(2) = 5e-18
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = -1

Query: 74  VNCCASTHFGENQLALGSSGISPL 3
           VNCCASTHFGENQLALG+SGISPL
Sbjct: 48  VNCCASTHFGENQLALGASGISPL 71


>tr|Q85WT3|Q85WT3_PINKO ORF46f OS=Pinus koraiensis PE=4 SV=1
          Length = 46

 Score = 87.4 bits (215), Expect = 4e-16
 Identities = 42/46 (91%), Positives = 42/46 (91%)
 Frame = +1

Query: 13  MPLEPRASWFSPKCVEAQQLTRPSRGKAPFRCGLRERYQIEANSEY 150
           MPLEPRASWFSPKCVEAQQLT PSRGKA FR G RERYQIEANSEY
Sbjct: 1   MPLEPRASWFSPKCVEAQQLTGPSRGKALFRYGPRERYQIEANSEY 46


>tr|A9PE47|A9PE47_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 59

 Score = 51.2 bits (121), Expect(2) = 1e-13
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +2

Query: 80  HLGVKHRSGAGCESGTKSRQTLNTRCNVQVKGTK 181
           HLGVKH  GAG ESGTKSRQTLNTR ++++ G K
Sbjct: 23  HLGVKHCFGAGRESGTKSRQTLNTRYDLKITGVK 56



 Score = 48.9 bits (115), Expect(2) = 1e-13
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 13 MPLEPRASWFSPKCVEAQQLT 75
          MPLEPRASWFSPKCVEAQQLT
Sbjct: 1  MPLEPRASWFSPKCVEAQQLT 21


>tr|Q9RXQ4|Q9RXQ4_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_0254 PE=4 SV=1
          Length = 139

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/49 (69%), Positives = 36/49 (73%)
 Frame = -1

Query: 398 LSPAHLRRKSA*SVSYYALFQGWLLLGKPPACLCTPTSFTTERSFRGLS 252
           LSP H RR     VSYYALF+GWLLL +PP CLC  TS TTERSFR LS
Sbjct: 91  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 139


>tr|Q9RS75|Q9RS75_DEIRA Putative uncharacterized protein
           OS=Deinococcus radiodurans GN=DR_2252 PE=4 SV=1
          Length = 133

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 34/49 (69%), Positives = 36/49 (73%)
 Frame = -1

Query: 398 LSPAHLRRKSA*SVSYYALFQGWLLLGKPPACLCTPTSFTTERSFRGLS 252
           LSP H RR     VSYYALF+GWLLL +PP CLC  TS TTERSFR LS
Sbjct: 85  LSPDHFRRIVTRPVSYYALFEGWLLLSQPPGCLCDDTSLTTERSFRDLS 133


>tr|A7QCF1|A7QCF1_VITVI Chromosome undetermined scaffold_77, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035369001 PE=4 SV=1
          Length = 235

 Score = 46.6 bits (109), Expect(2) = 9e-11
 Identities = 22/24 (91%), Positives = 22/24 (91%)
 Frame = -1

Query: 74  VNCCASTHFGENQLALGSSGISPL 3
           VN CASTHFGENQLALGSS ISPL
Sbjct: 57  VNRCASTHFGENQLALGSSDISPL 80



 Score = 43.5 bits (101), Expect(2) = 9e-11
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = -3

Query: 150 VFRVCLDLVPLSQPAPERCFTPR 82
           +FRVCLDLVPLS+PA ++CFTPR
Sbjct: 32  MFRVCLDLVPLSRPALKQCFTPR 54


>tr|B3D9S7|B3D9S7_BURM1 Putative uncharacterized protein
           OS=Burkholderia multivorans (strain ATCC 17616 / 249)
           GN=BMULJ_05092 PE=4 SV=1
          Length = 123

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 36/81 (44%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
 Frame = -1

Query: 515 TQADILASASSTPARTGASIWGGTLPYR-CFLTSHSFGRPLSPAHLRRKSA*SVSYYALF 339
           T   I  S +S+      S   GTL Y  C   S +    L+P HL R++  SVSYYA F
Sbjct: 43  THVSIRTSDTSSTLYKAPSQAYGTLSYHACKHASAASVYGLAPLHLPRRTTRSVSYYAFF 102

Query: 338 QGWLLLGKPPACLCTPTSFTT 276
           +GWLLL +PP C   PTSF T
Sbjct: 103 KGWLLLSQPPDCFSLPTSFPT 123


>tr|A1IW39|A1IW39_9LAMI Putative uncharacterized protein ophh-69
           (Fragment) OS=Phillyrea latifolia GN=ophh-69 PE=2 SV=1
          Length = 166

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 30/46 (65%), Positives = 34/46 (73%)
 Frame = +3

Query: 387 SGTKRSAEAVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNEN 524
           +G  +   AVGC+ TSVGERSA +GS  AS  GRSGSENVGLSN N
Sbjct: 100 AGDVQGCRAVGCKNTSVGERSALEGSPRASSGGRSGSENVGLSNAN 145



 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 28/38 (73%), Positives = 30/38 (78%)
 Frame = +3

Query: 411 AVGCQKTSVGERSAPDGSTSASRCGRSGSENVGLSNEN 524
           AVGC+ TSVGERSA +GS   S  GRSGSENVGLSN N
Sbjct: 3   AVGCKNTSVGERSALEGSPRVSSGGRSGSENVGLSNAN 40