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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921631
Clone id YMU001_000152_C12
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CATCAAACCTGAAGACTTCAGAGGCTCAGTCTGTTGCAACTGGAACTGGTCCGAACCGGC
CACCTGGAAAATTAATTTTTGGCAGCGGGGGTAATGCTGGTTCATGTTCTTCTCCAAAGT
AAGCAGCACCTAAAGTTCCTATCAAAGAGGAGCCTCCAAAAGAAGAACAGCCTAAATTTC
AGGCTTTCAGTGGCAAGAAGTACTCACTGAAGGGATGAGGAATGAGGCTGGACTCGATGT
GTAAATTCACTCATGAGAGTAGAAATTTGAATTGACAGTATTGTACAGCATTGATCAAAG
CGGATTATATCAAGCAATTTGTTGCCATTGAACTAAGTAGCGTGGTTTGGAGCATACCTC
ATTTTGGATTCGTAGCCTTAAACAGCTCGTTGATAGCTGCTCTATACAGGGCAGTTGGGC
ACCCACATGTCTCAGCTGGGTGAATGTAATGAT
■■Homology search results ■■ -
sp_hit_id Q92N33
Definition sp|Q92N33|ADEC1_RHIME Adenine deaminase 1 OS=Rhizobium meliloti
Align length 45
Score (bit) 35.0
E-value 0.15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921631|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_C12.
         (453 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92N33|ADEC1_RHIME Adenine deaminase 1 OS=Rhizobium meliloti ...    35   0.15 
sp|Q2K5M6|ADEC1_RHIEC Adenine deaminase 1 OS=Rhizobium etli (str...    31   2.2  
sp|Q9CW46|RAVR1_MOUSE Ribonucleoprotein PTB-binding 1 OS=Mus mus...    30   4.8  
sp|P0A690|PG46_MYCTU Uncharacterized PE-PGRS family protein PE_P...    30   6.3  
sp|P0A691|PG46_MYCBO Uncharacterized PE-PGRS family protein PE_P...    30   6.3  
sp|Q5TM67|NRM_MACMU Nurim OS=Macaca mulatta GN=NRM PE=3 SV=1           30   6.3  
sp|Q7Z6J2|GRASP_HUMAN General receptor for phosphoinositides 1-a...    30   6.3  
sp|Q5XI28|RAVR1_RAT Ribonucleoprotein PTB-binding 1 OS=Rattus no...    29   8.2  
sp|Q55EQ0|GTAF_DICDI GATA zinc finger domain-containing protein ...    29   8.4  
sp|Q3MGA0|DDL_ANAVT D-alanine--D-alanine ligase OS=Anabaena vari...    29   8.4  

>sp|Q92N33|ADEC1_RHIME Adenine deaminase 1 OS=Rhizobium meliloti
           GN=ade1 PE=3 SV=1
          Length = 565

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 247 NLHIESSLI-PHPFSEYFLPLKA*NLGCSSFGGSSLIGTLGAAYF 116
           +LHIESSL+ PH F    LPL    + C     ++++GT G  YF
Sbjct: 75  HLHIESSLVTPHEFDRCVLPLGITTVVCDPHEIANVLGTEGIQYF 119


>sp|Q2K5M6|ADEC1_RHIEC Adenine deaminase 1 OS=Rhizobium etli (strain
           CFN 42 / ATCC 51251) GN=ade1 PE=3 SV=1
          Length = 565

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 247 NLHIESSLI-PHPFSEYFLPLKA*NLGCSSFGGSSLIGTLGAAYFGE 110
           +LHIESSL+ PH F    LP       C     ++++GT G  +F E
Sbjct: 75  HLHIESSLVTPHEFDRCVLPYGVTTAICDPHEIANVLGTEGIEFFLE 121


>sp|Q9CW46|RAVR1_MOUSE Ribonucleoprotein PTB-binding 1 OS=Mus
           musculus GN=Raver1 PE=1 SV=2
          Length = 748

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 229 SLIPHPFSEYFLPLKA*NLGCSSFGGSSLIG--TLGAAYFGEEHEPALPPLPKINFPGGR 56
           SL+  P  +Y +PL       S    S+L G  T G    G    PA PPLP    PGG 
Sbjct: 499 SLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKETRGWGGSGRGRRPAEPPLPSPAVPGGG 558

Query: 55  FG 50
            G
Sbjct: 559 SG 560


>sp|P0A690|PG46_MYCTU Uncharacterized PE-PGRS family protein
           PE_PGRS46 OS=Mycobacterium tuberculosis GN=PE_PGRS46
           PE=3 SV=1
          Length = 778

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 36  ATGTGPNRPPGKLIFGSGGNAGS 104
           A GTG    PG L+ G+GGN GS
Sbjct: 125 ADGTGAPGGPGGLLLGNGGNGGS 147


>sp|P0A691|PG46_MYCBO Uncharacterized PE-PGRS family protein
           PE_PGRS46 OS=Mycobacterium bovis GN=PE_PGRS46 PE=3 SV=1
          Length = 778

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 36  ATGTGPNRPPGKLIFGSGGNAGS 104
           A GTG    PG L+ G+GGN GS
Sbjct: 125 ADGTGAPGGPGGLLLGNGGNGGS 147


>sp|Q5TM67|NRM_MACMU Nurim OS=Macaca mulatta GN=NRM PE=3 SV=1
          Length = 262

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 288 ALIKADYIKQFVAIELSSVVWSIPHFGFVALNSSLIAALYRAVGH 422
           AL    +++  V +EL +V+W +P  G   L  +L+  LY  + H
Sbjct: 188 ALRLFSHLRHPVCVELLTVLWVVPTLGMDRLLLALLLTLYLGLAH 232


>sp|Q7Z6J2|GRASP_HUMAN General receptor for phosphoinositides
           1-associated scaffold protein OS=Homo sapiens GN=GRASP
           PE=1 SV=1
          Length = 395

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 121 YFGEEHEPALPPLPKINFPGGRFGPVPVAT 32
           +FG+   PALPP P    P   FGP P  T
Sbjct: 289 FFGDSEPPALPPPPP---PARAFGPGPAET 315


>sp|Q5XI28|RAVR1_RAT Ribonucleoprotein PTB-binding 1 OS=Rattus
           norvegicus GN=Raver1 PE=2 SV=1
          Length = 748

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 229 SLIPHPFSEYFLPLKA*NLGCSSFGGSSLIG--TLGAAYFGEEHEPALPPLPKINFPGG 59
           SL+  P  +Y +PL       S    S+L G  T G    G    PA PPLP    PGG
Sbjct: 499 SLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKETRGWGGSGRGRRPAEPPLPSPAVPGG 557


>sp|Q55EQ0|GTAF_DICDI GATA zinc finger domain-containing protein 6
           OS=Dictyostelium discoideum GN=gtaF PE=4 SV=1
          Length = 623

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -1

Query: 363 NEVCSKPRYLVQWQQIA*Y----NPL*SMLYNTVNSNFYSHE*IYTSSPASFLI 214
           N +CS P Y + W++I  Y    N   S++ + ++S+ Y    I+  S   FL+
Sbjct: 13  NSICSNPNYKLIWKKIQQYSYEVNSSSSLILSDISSSSYDLSGIFEKSLMIFLM 66


>sp|Q3MGA0|DDL_ANAVT D-alanine--D-alanine ligase OS=Anabaena
           variabilis (strain ATCC 29413 / PCC 7937) GN=ddl PE=3
           SV=1
          Length = 367

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 279 TVNSNFYSHE*IYTSSPASFLIPSV 205
           T NS+FY +E  YT+  A  LIP+V
Sbjct: 257 TFNSDFYDYETKYTAGKADLLIPAV 281
tr_hit_id Q6PQ02
Definition tr|Q6PQ02|Q6PQ02_WHEAT Ubiquitin fusion degradation protein OS=Triticum aestivum
Align length 71
Score (bit) 40.4
E-value 0.045
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921631|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_C12.
         (453 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6PQ02|Q6PQ02_WHEAT Ubiquitin fusion degradation protein OS=T...    40   0.045
tr|A9TJK2|A9TJK2_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.49 
tr|Q9SJV0|Q9SJV0_ARATH Putative ubiquitin fusion-degradation pro...    35   2.5  
tr|A8MQW3|A8MQW3_ARATH Uncharacterized protein At2g21270.3 OS=Ar...    35   2.5  
tr|A6UBX0|A6UBX0_SINMW Adenine deaminase OS=Sinorhizobium medica...    34   3.2  
tr|B6TBJ6|B6TBJ6_MAIZE Ubiquitin fusion degradation protein 1 OS...    34   4.2  
tr|B3TLZ5|B3TLZ5_ELAGV Ubiquitin fusion degradation protein OS=E...    34   4.2  
tr|A2X1N0|A2X1N0_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.2  
tr|Q6NLS0|Q6NLS0_ARATH At2g29070 OS=Arabidopsis thaliana GN=At2g...    33   5.5  
tr|Q3E7H7|Q3E7H7_ARATH Uncharacterized protein At2g29070.1 OS=Ar...    33   5.5  
tr|O81075|O81075_ARATH Putative ubiquitin fusion-degradation pro...    33   5.5  
tr|Q6D8K9|Q6D8K9_ERWCT Putative regulatory protein OS=Erwinia ca...    33   7.1  

>tr|Q6PQ02|Q6PQ02_WHEAT Ubiquitin fusion degradation protein
           OS=Triticum aestivum GN=UFD1 PE=2 SV=1
          Length = 317

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 27/71 (38%), Positives = 31/71 (43%)
 Frame = +3

Query: 3   SNLKTSEAQSVATGTGPNRPPGKLIFGSGGNAGSCSSXXXXXXXXXXXXXXXXXXXXXFQ 182
           +N     A S    T P +  GKL+FGSG   GS SS                     F 
Sbjct: 250 TNSVQPSAASTPQITAPRKTTGKLVFGSG---GSQSSKGTEKVPDKDAKEDPKKEEPKFS 306

Query: 183 AFSGKKYSLKG 215
           AF+GKKYSLKG
Sbjct: 307 AFTGKKYSLKG 317


>tr|A9TJK2|A9TJK2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_108284 PE=4 SV=1
          Length = 322

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 15  TSEAQSVATGTGPN--RPPGKLIFGSGGNAGSCSSXXXXXXXXXXXXXXXXXXXXXFQAF 188
           T+ +    TGT P   + PGKL+FG G +    ++                     FQAF
Sbjct: 254 TTSSVQKPTGTPPAGAQRPGKLVFGGGSSNAPAAAKLPSTKKEEVKEEKKEPEASKFQAF 313

Query: 189 SGKKYSLK 212
           SG+KYSL+
Sbjct: 314 SGRKYSLR 321


>tr|Q9SJV0|Q9SJV0_ARATH Putative ubiquitin fusion-degradation
           protein (At2g21270) OS=Arabidopsis thaliana GN=At2g21270
           PE=2 SV=2
          Length = 319

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 6   NLKTSEAQSVATGTGPNRPPGKLIFGSGGN-AGSCSSXXXXXXXXXXXXXXXXXXXXXFQ 182
           N ++S A S    T   R  GKL+FG+ GN A   ++                     FQ
Sbjct: 252 NGQSSVASSSEKAT---RAQGKLVFGANGNRAPKEAAPKVGAAKETKKEEQEKKDEPKFQ 308

Query: 183 AFSGKKYSLKG 215
           AFSGKKYSL+G
Sbjct: 309 AFSGKKYSLRG 319


>tr|A8MQW3|A8MQW3_ARATH Uncharacterized protein At2g21270.3
           OS=Arabidopsis thaliana GN=At2g21270 PE=4 SV=1
          Length = 340

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 6   NLKTSEAQSVATGTGPNRPPGKLIFGSGGN-AGSCSSXXXXXXXXXXXXXXXXXXXXXFQ 182
           N ++S A S    T   R  GKL+FG+ GN A   ++                     FQ
Sbjct: 273 NGQSSVASSSEKAT---RAQGKLVFGANGNRAPKEAAPKVGAAKETKKEEQEKKDEPKFQ 329

Query: 183 AFSGKKYSLKG 215
           AFSGKKYSL+G
Sbjct: 330 AFSGKKYSLRG 340


>tr|A6UBX0|A6UBX0_SINMW Adenine deaminase OS=Sinorhizobium medicae
           (strain WSM419) GN=Smed_2318 PE=4 SV=1
          Length = 565

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 247 NLHIESSLI-PHPFSEYFLPLKA*NLGCSSFGGSSLIGTLGAAYF 116
           +LHIESSL+ PH F    LPL      C     ++++GT G  YF
Sbjct: 75  HLHIESSLVTPHEFDRCVLPLGVTTAICDPHEIANVLGTEGIQYF 119


>tr|B6TBJ6|B6TBJ6_MAIZE Ubiquitin fusion degradation protein 1
           OS=Zea mays PE=2 SV=1
          Length = 310

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +3

Query: 30  SVATGTGPNRPPGKLIFGSGGNAGSCSSXXXXXXXXXXXXXXXXXXXXXFQAFSGKKYSL 209
           + + G+   +  GKL+FGSGG+    +                      F AF+GKKYSL
Sbjct: 257 TTSQGSSSRKATGKLVFGSGGSRAEKAPEKEAEEPKKEDPK--------FAAFTGKKYSL 308

Query: 210 KG 215
           KG
Sbjct: 309 KG 310


>tr|B3TLZ5|B3TLZ5_ELAGV Ubiquitin fusion degradation protein
           OS=Elaeis guineensis var. tenera PE=2 SV=1
          Length = 320

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +3

Query: 30  SVATGTGPNRPPGKLIFGSGGNAGSCSSXXXXXXXXXXXXXXXXXXXXXFQAFSGKKYSL 209
           S +  +   +  GKL+FGS  N  S  +                     FQAF+GKKYSL
Sbjct: 263 STSESSSSRQTKGKLVFGSNANRASKEAQVLKQTKEEPAKKEEPK----FQAFTGKKYSL 318

Query: 210 KG 215
           KG
Sbjct: 319 KG 320


>tr|A2X1N0|A2X1N0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06110 PE=4 SV=1
          Length = 315

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +3

Query: 30  SVATGTGPNRPPGKLIFGSGGNAGSCSSXXXXXXXXXXXXXXXXXXXXXFQAFSGKKYSL 209
           S +  +   +  GKL+FG GGN    +S                     F AF+G+KYSL
Sbjct: 257 STSQSSSSRKTTGKLVFGPGGNR---TSKETEKVPEKEPKEDPKKDEPKFSAFTGRKYSL 313

Query: 210 KG 215
           KG
Sbjct: 314 KG 315


>tr|Q6NLS0|Q6NLS0_ARATH At2g29070 OS=Arabidopsis thaliana
           GN=At2g29070 PE=2 SV=1
          Length = 312

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/70 (31%), Positives = 29/70 (41%)
 Frame = +3

Query: 6   NLKTSEAQSVATGTGPNRPPGKLIFGSGGNAGSCSSXXXXXXXXXXXXXXXXXXXXXFQA 185
           N K  E  SV T   P +  GKL+FGS   + +  +                     F+ 
Sbjct: 246 NGKDDEKLSVTT---PRQISGKLVFGSNSKSAAKETAKVDDPKNIVQESSTKSDEAKFKV 302

Query: 186 FSGKKYSLKG 215
           F+GKKYSL G
Sbjct: 303 FTGKKYSLNG 312


>tr|Q3E7H7|Q3E7H7_ARATH Uncharacterized protein At2g29070.1
           OS=Arabidopsis thaliana GN=At2g29070 PE=4 SV=1
          Length = 280

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/70 (31%), Positives = 29/70 (41%)
 Frame = +3

Query: 6   NLKTSEAQSVATGTGPNRPPGKLIFGSGGNAGSCSSXXXXXXXXXXXXXXXXXXXXXFQA 185
           N K  E  SV T   P +  GKL+FGS   + +  +                     F+ 
Sbjct: 214 NGKDDEKLSVTT---PRQISGKLVFGSNSKSAAKETAKVDDPKNIVQESSTKSDEAKFKV 270

Query: 186 FSGKKYSLKG 215
           F+GKKYSL G
Sbjct: 271 FTGKKYSLNG 280