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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921638
Clone id YMU001_000152_D10
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCCTCTGCTTTGTAAAATTCTATGCTTTCTTGCTTTGAAGGTGGTGTGTCTCTTCTGGAT
TGTCATGTCCTTACTGGTTCTTAAGCTCTCCAGCTCAAGCTTAAGTTGTATCTCCATCCT
ACATCCATATGTTTTGACTAGCTCAGGACTCTATCACTTATCTCTATCTCTGTCTTCGTC
CTGATGCCTCTAGCCCTTTTTCAAACAAATCTCCTGATAACTTTCTACTTCAAGGAATCT
TCCATGCATTCTCTTGTCCTTACCAAACTCGTGTCTCTTGCAAAATCATCTTTTCCTGAA
TGCTTCAGGGGAAGCCGCTAGAAGTAAATGGTAACAGTGCCGTAATGCATCAGGGATATA
CATGGGTCCAGTTTGTGGTGCATCAAGGTCTTGATCAACCTCCTCATAAAACGTCATGGC
GGTAAGCTTGTACCCAGCTGCAAGAAGATACTCCTTGACTGCCCAGTTTAGAGCCATTCG
TTCACTTTCACGGAGTGGATCCCAAACAAGGACTTTATTCTTAGTCTCTGTTGCCAGCTC
TTGCTTGA
■■Homology search results ■■ -
sp_hit_id Q6P6Y1
Definition sp|Q6P6Y1|K1468_DANRE LisH domain and HEAT repeat-containing protein KIAA1468 homolog OS=Danio rerio
Align length 41
Score (bit) 41.2
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921638|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_D10.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6P6Y1|K1468_DANRE LisH domain and HEAT repeat-containing pro...    41   0.003
sp|Q148V7|K1468_MOUSE LisH domain and HEAT repeat-containing pro...    40   0.007
sp|Q9P260|K1468_HUMAN LisH domain and HEAT repeat-containing pro...    40   0.007
sp|Q08BT5|K1468_XENTR LisH domain and HEAT repeat-containing pro...    38   0.028
sp|O62267|SRE30_CAEEL Serpentine receptor class epsilon-30 OS=Ca...    31   4.5  

>sp|Q6P6Y1|K1468_DANRE LisH domain and HEAT repeat-containing
           protein KIAA1468 homolog OS=Danio rerio GN=zgc:66014
           PE=2 SV=1
          Length = 1189

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = -3

Query: 501 DPLRESERMALNWAVKEYLLAAGYKLTAMTFYEE-VDQDLD 382
           +P+R  E+ ALN+ V EYLL   YKLT++TF +E  DQD +
Sbjct: 223 EPIRPLEKRALNFLVNEYLLKNEYKLTSITFSDENDDQDFE 263


>sp|Q148V7|K1468_MOUSE LisH domain and HEAT repeat-containing
           protein KIAA1468 OS=Mus musculus GN=Kiaa1468 PE=1 SV=1
          Length = 1216

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = -3

Query: 522 KNKVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEE-VDQDLD 382
           K+   + +P++  E+ ALN+ V E+LL   YKLT++TF +E  DQD +
Sbjct: 242 KSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFE 289


>sp|Q9P260|K1468_HUMAN LisH domain and HEAT repeat-containing
           protein KIAA1468 OS=Homo sapiens GN=KIAA1468 PE=1 SV=2
          Length = 1216

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = -3

Query: 522 KNKVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEE-VDQDLD 382
           K+   + +P++  E+ ALN+ V E+LL   YKLT++TF +E  DQD +
Sbjct: 242 KSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFE 289


>sp|Q08BT5|K1468_XENTR LisH domain and HEAT repeat-containing
           protein KIAA1468 homolog OS=Xenopus tropicalis PE=2 SV=1
          Length = 1196

 Score = 38.1 bits (87), Expect = 0.028
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
 Frame = -3

Query: 522 KNKVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEE-VDQDLD 382
           K+   + +P++  E+ ALN+ V EYLL    KLT++TF +E  DQD +
Sbjct: 221 KSSPEIQEPIKPLEKRALNFLVNEYLLKNNNKLTSITFSDENDDQDFE 268


>sp|O62267|SRE30_CAEEL Serpentine receptor class epsilon-30
           OS=Caenorhabditis elegans GN=sre-30 PE=2 SV=1
          Length = 357

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 17/65 (26%), Positives = 35/65 (53%)
 Frame = +1

Query: 88  LQLKLKLYLHPTSICFD*LRTLSLISISVFVLMPLALFQTNLLITFYFKESSMHSLVLTK 267
           L LKL + +   S C   +    ++++S+FV++ + LF  NL+       +  H L++ K
Sbjct: 23  LSLKLLISIFELSSC---ILCGYILNLSIFVMLKIQLFHKNLMFLTVPLFAIWHELIIGK 79

Query: 268 LVSLA 282
            +++A
Sbjct: 80  FITIA 84
tr_hit_id A7PAV4
Definition tr|A7PAV4|A7PAV4_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera
Align length 71
Score (bit) 82.4
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921638|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_D10.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PAV4|A7PAV4_VITVI Chromosome chr14 scaffold_9, whole genome...    82   1e-14
tr|Q9LF07|Q9LF07_ARATH Putative uncharacterized protein T21H19_1...    82   2e-14
tr|Q8VYW7|Q8VYW7_ARATH AT5g16210/T21H19_130 OS=Arabidopsis thali...    82   2e-14
tr|A9SN32|A9SN32_PHYPA Predicted protein (Fragment) OS=Physcomit...    77   8e-13
tr|Q5QMW8|Q5QMW8_ORYSJ cDNA clone:J023064M06, full insert sequen...    75   2e-12
tr|B8A8Z0|B8A8Z0_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A2ZTR4|A2ZTR4_ORYSJ Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A9RWP2|A9RWP2_PHYPA Predicted protein OS=Physcomitrella paten...    73   9e-12
tr|A9RWN5|A9RWN5_PHYPA Predicted protein OS=Physcomitrella paten...    73   9e-12
tr|B6NW56|B6NW56_BRAFL Putative uncharacterized protein (Fragmen...    42   0.016
tr|B6NGF2|B6NGF2_BRAFL Putative uncharacterized protein (Fragmen...    41   0.047
tr|Q5RCE9|Q5RCE9_PONAB Putative uncharacterized protein DKFZp459...    40   0.10 
tr|B3RIS5|B3RIS5_TRIAD Putative uncharacterized protein OS=Trich...    40   0.10 
tr|B3S846|B3S846_TRIAD Predicted protein OS=Trichoplax adhaerens...    35   3.4  

>tr|A7PAV4|A7PAV4_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038273001
           PE=4 SV=1
          Length = 1154

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 42/71 (59%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
 Frame = -3

Query: 498 PLRESERMALNWAVKEYLLAAGYKLTAMTFYEEV-DQDLDAPQTGPMYIPDALRHCYHLL 322
           PL+++ER  LN AVKEYLL AGY+LTAMTFYEEV DQ+LD  Q  P  +PDALRH Y+  
Sbjct: 145 PLKDNERRDLNCAVKEYLLLAGYRLTAMTFYEEVIDQNLDVWQNTPACVPDALRHYYYQY 204

Query: 321 LAASPEAFRKR 289
           L+++ EA  ++
Sbjct: 205 LSSTAEAAEEK 215


>tr|Q9LF07|Q9LF07_ARATH Putative uncharacterized protein T21H19_130
           OS=Arabidopsis thaliana GN=T21H19_130 PE=4 SV=1
          Length = 1189

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 41/71 (57%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
 Frame = -3

Query: 498 PLRESERMALNWAVKEYLLAAGYKLTAMTFYEEV-DQDLDAPQTGPMYIPDALRHCYHLL 322
           PL+ +ER  LN AVKEYLL AGY+LTAMTFYEEV DQ+LD  Q  P ++PDALR+ Y+  
Sbjct: 145 PLKNNERQDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDVWQDSPAHVPDALRYYYYQY 204

Query: 321 LAASPEAFRKR 289
           L+++ EA  ++
Sbjct: 205 LSSTSEAAEEK 215


>tr|Q8VYW7|Q8VYW7_ARATH AT5g16210/T21H19_130 OS=Arabidopsis thaliana
           GN=At5g16210 PE=2 SV=1
          Length = 1180

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 41/71 (57%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
 Frame = -3

Query: 498 PLRESERMALNWAVKEYLLAAGYKLTAMTFYEEV-DQDLDAPQTGPMYIPDALRHCYHLL 322
           PL+ +ER  LN AVKEYLL AGY+LTAMTFYEEV DQ+LD  Q  P ++PDALR+ Y+  
Sbjct: 145 PLKNNERQDLNCAVKEYLLLAGYRLTAMTFYEEVTDQNLDVWQDSPAHVPDALRYYYYQY 204

Query: 321 LAASPEAFRKR 289
           L+++ EA  ++
Sbjct: 205 LSSTSEAAEEK 215


>tr|A9SN32|A9SN32_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_40179 PE=4 SV=1
          Length = 1064

 Score = 76.6 bits (187), Expect = 8e-13
 Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 11/182 (6%)
 Frame = -3

Query: 540 ELATETKNKVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEEVDQDLDAPQTGPM 361
           E+ +      +V + L E ER+ L+ AVKEYL+ AGYK+ AMTF EEV+ DLD+      
Sbjct: 113 EVLSANSGNAVVLELLGEKERLVLDCAVKEYLMFAGYKIAAMTFQEEVNIDLDSWPHTAA 172

Query: 360 YIPDALRHCYHLLLAASPEAFRKR*FCKRHEFGKDKRMHG-----RFLEVESYQEICLKK 196
           ++P+ALR  Y   LAA+ EA + +    +      K +         L+VE+   +   +
Sbjct: 173 HVPEALRQYYRAFLAATVEARQDKDAVHKERDALLKEIESLSKEKEVLKVENMSMVKSAE 232

Query: 195 G*RHQDEDRDRDK**SPE-----LVKTYGCRMEI-QLKLELESLRTSKDMTIQKRHTTFK 34
             R   +++DR      E      ++   CR E+  LKLELE++ +S+ + + +   +  
Sbjct: 233 SLRRALKEKDRHVQQMKESLEQSTIQLNDCRAEVTSLKLELENVISSRALLVNQDQVSVA 292

Query: 33  AR 28
           A+
Sbjct: 293 AQ 294


>tr|Q5QMW8|Q5QMW8_ORYSJ cDNA clone:J023064M06, full insert sequence
           OS=Oryza sativa subsp. japonica GN=B1075D06.2 PE=2 SV=1
          Length = 1183

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
 Frame = -3

Query: 516 KVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEEV-DQDLDAPQTGPMYIPDALR 340
           K+    PL+++ER  LN AVKEYLL AGY+L AMTF EEV DQDLD        +PDALR
Sbjct: 145 KISTLGPLKDNERKDLNCAVKEYLLLAGYRLAAMTFIEEVPDQDLDVWINSSACVPDALR 204

Query: 339 HCYHLLLAASPEAFRKR*FCKR---------HEFGKDKRMHGRFLEVESYQEICLKKG*R 187
             Y+  L+++ EA  ++    R            G +K    +  EV + Q   L+K   
Sbjct: 205 RYYYQYLSSTTEAAEEKISILRENETLLKDNESLGAEKDALIKSREVANSQIAALRKSLE 264

Query: 186 HQDED--------RDRDK**SPELVKTYGCRMEI-QLKLELESLRTSKDMT 61
              +D        +D  +    +  +   CR EI  LK+ +E  R+SK ++
Sbjct: 265 AAHKDIKEKEKTVQDLKQSLDVQRKELNDCRAEITSLKMHIEGTRSSKRLS 315


>tr|B8A8Z0|B8A8Z0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02169 PE=4 SV=1
          Length = 1199

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
 Frame = -3

Query: 516 KVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEEV-DQDLDAPQTGPMYIPDALR 340
           K+    PL+++ER  LN AVKEYLL AGY+L AMTF EEV DQDLD        +PDALR
Sbjct: 161 KISTLGPLKDNERKDLNCAVKEYLLLAGYRLAAMTFIEEVPDQDLDVWINSSACVPDALR 220

Query: 339 HCYHLLLAASPEAFRKR*FCKR---------HEFGKDKRMHGRFLEVESYQEICLKKG*R 187
             Y+  L+++ EA  ++    R            G +K    +  EV + Q   L+K   
Sbjct: 221 RYYYQYLSSTTEAAEEKISILRENETLLKDNESLGAEKDALIKSREVANSQIAALRKSLE 280

Query: 186 HQDED--------RDRDK**SPELVKTYGCRMEI-QLKLELESLRTSKDMT 61
              +D        +D  +    +  +   CR EI  LK+ +E  R+SK ++
Sbjct: 281 AAHKDIKEKEKTVQDLKQSLDVQRKELNDCRAEITSLKMHIEGTRSSKRLS 331


>tr|A2ZTR4|A2ZTR4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001936 PE=4 SV=1
          Length = 1187

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
 Frame = -3

Query: 516 KVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEEV-DQDLDAPQTGPMYIPDALR 340
           K+    PL+++ER  LN AVKEYLL AGY+L AMTF EEV DQDLD        +PDALR
Sbjct: 161 KISTLGPLKDNERKDLNCAVKEYLLLAGYRLAAMTFIEEVPDQDLDVWINSSACVPDALR 220

Query: 339 HCYHLLLAASPEAFRKR*FCKR---------HEFGKDKRMHGRFLEVESYQEICLKKG*R 187
             Y+  L+++ EA  ++    R            G +K    +  EV + Q   L+K   
Sbjct: 221 RYYYQYLSSTTEAAEEKISILRENETLLKDNESLGAEKDALIKSREVANSQIAALRKSLE 280

Query: 186 HQDED--------RDRDK**SPELVKTYGCRMEI-QLKLELESLRTSKDMT 61
              +D        +D  +    +  +   CR EI  LK+ +E  R+SK ++
Sbjct: 281 AAHKDIKEKEKTVQDLKQSLDVQRKELNDCRAEITSLKMHIEGTRSSKRLS 331


>tr|A9RWP2|A9RWP2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_178851 PE=4 SV=1
          Length = 1136

 Score = 73.2 bits (178), Expect = 9e-12
 Identities = 37/80 (46%), Positives = 51/80 (63%)
 Frame = -3

Query: 540 ELATETKNKVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEEVDQDLDAPQTGPM 361
           E +  +   V V   L E E++ +N AVKEYL+ AGYK++AMTF EEV+ DLD       
Sbjct: 124 EKSMTSNGSVKVLGKLGEKEKLDINCAVKEYLMVAGYKISAMTFQEEVNLDLDDWPDTVA 183

Query: 360 YIPDALRHCYHLLLAASPEA 301
           ++PDALRH YH  + ++ EA
Sbjct: 184 HVPDALRHYYHAFVCSTAEA 203


>tr|A9RWN5|A9RWN5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_120462 PE=4 SV=1
          Length = 1037

 Score = 73.2 bits (178), Expect = 9e-12
 Identities = 37/80 (46%), Positives = 51/80 (63%)
 Frame = -3

Query: 540 ELATETKNKVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEEVDQDLDAPQTGPM 361
           E +  +   V V   L E E++ +N AVKEYL+ AGYK++AMTF EEV+ DLD       
Sbjct: 124 EKSMTSNGSVKVLGKLGEKEKLDINCAVKEYLMVAGYKISAMTFQEEVNLDLDDWPDTVA 183

Query: 360 YIPDALRHCYHLLLAASPEA 301
           ++PDALRH YH  + ++ EA
Sbjct: 184 HVPDALRHYYHAFVCSTAEA 203


>tr|B6NW56|B6NW56_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_99817 PE=4 SV=1
          Length = 592

 Score = 42.4 bits (98), Expect = 0.016
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
 Frame = -3

Query: 531 TETKNKVLVWDPLRESERMALNWAVKEYLLAAGYKLTAMTFYEEV-DQDLD 382
           TET+      +P++  E+ ALN+ V EYLL   +KLT++TF +E  DQD +
Sbjct: 182 TETQQASSKEEPVKPHEKRALNFLVNEYLLKQDFKLTSITFSDECEDQDFE 232