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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921648
Clone id YMU001_000152_E08
Library
Length 370
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTGAATCTTCAAGATGTGAAGCCTTCATCTTCCATTGTGGCTTCAAATACATCAAGCAC
TTGTGAGAAAGCTCTGAGTGTCATGGATGAAGAACTACAGATATTCCCGCCTTTCGTACA
TGACACGAACCAACAAAAAATGATCAGTTGTGCTAGCCGTGTACATTCAGCAGCAGCAAG
GAGGCACGTCAGTGAGACCAAGGAAGCACCTTTCATCACATATGCCACAAATTCACTTGA
CACCATATGTGCTGTTGAATGAGATGGGTTGGGGTCTCTTGTCTGTCGAGTTGTAACTTT
GTATTGGTGACAAGAAGAAAGGTTCAAATGATGATTACAACCATTACAAAAGGTGAGGCA
AGAGAAGGCG
■■Homology search results ■■ -
sp_hit_id Q8D2V8
Definition sp|Q8D2V8|LPXH_WIGBR UDP-2,3-diacylglucosamine hydrolase OS=Wigglesworthia glossinidia brevipalpis
Align length 74
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921648|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_E08.
         (370 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8D2V8|LPXH_WIGBR UDP-2,3-diacylglucosamine hydrolase OS=Wigg...    32   0.75 
sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious...    31   1.7  
sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious ...    31   1.7  
sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectio...    31   1.7  
sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectiou...    31   1.7  
sp|Q6CYD0|GMT_KLULA GDP-mannose transporter OS=Kluyveromyces lac...    29   6.4  
sp|P04885|E1BL_ADET1 E1B protein, large T-antigen homolog OS=Tre...    29   6.4  

>sp|Q8D2V8|LPXH_WIGBR UDP-2,3-diacylglucosamine hydrolase
           OS=Wigglesworthia glossinidia brevipalpis GN=lpxH PE=3
           SV=1
          Length = 248

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +3

Query: 24  LHLPLWLQIHQALVRKL*VSWMKNYRYSRLSYMTRTNKK*SVVLAVYIQQQQGGTSVRPR 203
           L LPL  +I    +  L ++  K     R++Y+T+ NK+       YI++    T+    
Sbjct: 142 LKLPLCARIK---ISNLIINKRKKLNLKRMNYLTKINKE-------YIKKIMEQTNTNIM 191

Query: 204 KHLSSHMPQIHLTP 245
            H   HMP++H+ P
Sbjct: 192 IHGHIHMPKVHVLP 205


>sp|P0C6V4|R1A_IBVBC Replicase polyprotein 1a OS=Avian infectious
            bronchitis virus (strain Beaudette CK) GN=1a PE=3 SV=1
          Length = 3951

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -2

Query: 336  NHHLNLSSCHQYKVTTRQTRDPNPSHSTAHMVSSEFVAYVMKGASLVSLTCLLAAAECTR 157
            N  LNL++ H+++VTT+            H V+   V+  +KGA L+ L   +A AE  +
Sbjct: 2831 NDVLNLANNHEFEVTTQ------------HGVTLNVVSRRLKGAVLI-LQTAVANAETPK 2877

Query: 156  LAQLIIFC---WFVSCTKGGNICSSSSMTLRA 70
               +   C   + ++C  GG +     +T+R+
Sbjct: 2878 YKFIKANCGDSFTIACAYGGTVVGLYPVTMRS 2909


>sp|P0C6V3|R1A_IBVB Replicase polyprotein 1a OS=Avian infectious
            bronchitis virus (strain Beaudette) GN=1a PE=1 SV=1
          Length = 3951

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -2

Query: 336  NHHLNLSSCHQYKVTTRQTRDPNPSHSTAHMVSSEFVAYVMKGASLVSLTCLLAAAECTR 157
            N  LNL++ H+++VTT+            H V+   V+  +KGA L+ L   +A AE  +
Sbjct: 2831 NDVLNLANNHEFEVTTQ------------HGVTLNVVSRRLKGAVLI-LQTAVANAETPK 2877

Query: 156  LAQLIIFC---WFVSCTKGGNICSSSSMTLRA 70
               +   C   + ++C  GG +     +T+R+
Sbjct: 2878 YKFIKANCGDSFTIACAYGGTVVGLYPVTMRS 2909


>sp|P0C6Y2|R1AB_IBVBC Replicase polyprotein 1ab OS=Avian infectious
            bronchitis virus (strain Beaudette CK) GN=rep PE=3 SV=1
          Length = 6629

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -2

Query: 336  NHHLNLSSCHQYKVTTRQTRDPNPSHSTAHMVSSEFVAYVMKGASLVSLTCLLAAAECTR 157
            N  LNL++ H+++VTT+            H V+   V+  +KGA L+ L   +A AE  +
Sbjct: 2831 NDVLNLANNHEFEVTTQ------------HGVTLNVVSRRLKGAVLI-LQTAVANAETPK 2877

Query: 156  LAQLIIFC---WFVSCTKGGNICSSSSMTLRA 70
               +   C   + ++C  GG +     +T+R+
Sbjct: 2878 YKFIKANCGDSFTIACAYGGTVVGLYPVTMRS 2909


>sp|P0C6Y1|R1AB_IBVB Replicase polyprotein 1ab OS=Avian infectious
            bronchitis virus (strain Beaudette) GN=rep PE=1 SV=1
          Length = 6629

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -2

Query: 336  NHHLNLSSCHQYKVTTRQTRDPNPSHSTAHMVSSEFVAYVMKGASLVSLTCLLAAAECTR 157
            N  LNL++ H+++VTT+            H V+   V+  +KGA L+ L   +A AE  +
Sbjct: 2831 NDVLNLANNHEFEVTTQ------------HGVTLNVVSRRLKGAVLI-LQTAVANAETPK 2877

Query: 156  LAQLIIFC---WFVSCTKGGNICSSSSMTLRA 70
               +   C   + ++C  GG +     +T+R+
Sbjct: 2878 YKFIKANCGDSFTIACAYGGTVVGLYPVTMRS 2909


>sp|Q6CYD0|GMT_KLULA GDP-mannose transporter OS=Kluyveromyces lactis
           GN=VRG4 PE=3 SV=1
          Length = 330

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +1

Query: 265 WVGVSCLSSCNFVLVTRRKVQM 330
           W+ ++CLSS  FVLV R+++++
Sbjct: 177 WMFINCLSSAAFVLVMRKRIKL 198


>sp|P04885|E1BL_ADET1 E1B protein, large T-antigen homolog OS=Tree
           shrew adenovirus serotype 1 PE=3 SV=1
          Length = 391

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
 Frame = -2

Query: 366 FSCLTFCNGCNHHLNLSSCHQ-----YKVTTRQTR-------DPNPSHSTAHMVSSEFVA 223
           +S LT   G    +NLS+C+      YKV  R          + + SH TA +V  E   
Sbjct: 310 YSLLTLAKGSERKVNLSTCYPDGLKVYKVLNRNPNRLFTRLCECDASHQTADIVLGEVGL 369

Query: 222 YVMKGASLVSLTCL 181
                 +L S+ CL
Sbjct: 370 PATADPTLDSVDCL 383
tr_hit_id Q7T064
Definition tr|Q7T064|Q7T064_DANRE Putative RNA methylase OS=Danio rerio
Align length 47
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921648|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_E08.
         (370 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7T064|Q7T064_DANRE Putative RNA methylase OS=Danio rerio GN=...    33   7.1  
tr|A0CGY9|A0CGY9_PARTE Chromosome undetermined scaffold_18, whol...    33   7.1  
tr|Q4WLW0|Q4WLW0_ASPFU C6 transcription factor, putative OS=Aspe...    33   9.2  

>tr|Q7T064|Q7T064_DANRE Putative RNA methylase OS=Danio rerio
           GN=trmt11 PE=2 SV=1
          Length = 466

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 360 CLTFCNGCNHHLNLSSCHQYKVTTRQTRDPNPSHSTAHMVSSEFVAY 220
           CLT  + C   L+ S   +  +T  +T+DP  S S AH+    F  Y
Sbjct: 391 CLTLISNCEQTLS-SHTSRRLITMEKTKDPEDSDSLAHLADPRFTPY 436


>tr|A0CGY9|A0CGY9_PARTE Chromosome undetermined scaffold_18, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00007496001 PE=4 SV=1
          Length = 4022

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/109 (22%), Positives = 40/109 (36%)
 Frame = -2

Query: 363  SCLTFCNGCNHHLNLSSCHQYKVTTRQTRDPNPSHSTAHMVSSEFVAYVMKGASLVSLTC 184
            +C  + + C+ +   S+C     TTR   +   S  T    ++        G+  V  TC
Sbjct: 1011 NCNNWLSSCSVNPGNSACE----TTRTCANYTGSTFTHSDCNTWLTDCTTNGSQCVYKTC 1066

Query: 183  LLAAAECTRLAQLIIFCWFVSCTKGGNICSSSSMTLRAFSQVLDVFEAT 37
                +  T         WF  CT  G+I   S+ T   +   + +F  T
Sbjct: 1067 TNYGSNVTTFNNSTCSTWFNECTNDGSIACKSARTCTNYGSKITIFNHT 1115


>tr|Q4WLW0|Q4WLW0_ASPFU C6 transcription factor, putative
           OS=Aspergillus fumigatus GN=AFUA_6G12130 PE=4 SV=1
          Length = 704

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 357 LTFCNGCNHHLNLSSCHQYKVTTRQTRDPNPSHSTAHMVSSEFVAYVMKGASLVSLTCL 181
           +T+C   + HL+L S     + T QT      H   H +S   +AYV+ GA++   T L
Sbjct: 286 ITYCKRAHQHLSLESLGSAHIETVQTLGIMAGH-YLHYISQPNLAYVLIGAAIRMATAL 343