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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921655
Clone id YMU001_000152_F03
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTACTCCTCTTCACTGCTCACATCAATCTTCTTCAAGCTCACGTATGCTCGGTTCTGGCA
CACTACCATCANAAAACATCCACACATTTCATCTCACTATGGTCATGCTCCTATGTTCAA
TACTTTTGCCTCTTGCTCCGAAATTTTTACTCACCTTCATACTCACATTTTCGCGTCTCC
AACATAATTTCTCTTTCCCNATCATTGTTTCTCACAACAAGCACACCTTCCAGTCAATCC
CATGCACAGGTTTTCCATCCTCAACCACAGGTTCATCACTCTGACTCTGTACCGTCTTCA
TGTGCAGTGTGCCAGTCTCTCCCTGAGACGACACATGCTGTGATGCACTGCTAATTGCAG
CAAGTTTGTCATGCATTACATTCTGCTCAAGCGTGCTTCCATATTCTTGTGCTAAGGGCT
CGGATACAGCCTCCGTGGACATATCCCTCTAAACACTCACTAAAGTACTCTCTCCTTGCT
CACTACTTACAGGCACATAATCAGGCTTGGGACTGATGGCACGACGTGCCCCCAAGGAAT
CAATGGCC
■■Homology search results ■■ -
sp_hit_id Q9C5X9
Definition sp|Q9C5X9|HAC1_ARATH Histone acetyltransferase HAC1 OS=Arabidopsis thaliana
Align length 67
Score (bit) 32.0
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921655|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_F03.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C5X9|HAC1_ARATH Histone acetyltransferase HAC1 OS=Arabidops...    32   2.0  
sp|Q9ZZW4|Q0142_YEAST Putative uncharacterized protein Q0142, mi...    32   2.6  
sp|A5GFW5|CASS4_PIG Cas scaffolding protein family member 4 OS=S...    31   3.4  
sp|A2A690|TANC2_MOUSE Protein TANC2 OS=Mus musculus GN=Tanc2 PE=...    31   4.5  
sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1 O...    30   5.9  
sp|Q9HCD6|TANC2_HUMAN Protein TANC2 OS=Homo sapiens GN=TANC2 PE=...    30   7.7  
sp|Q5BIW4|ALS2_PANTR Alsin OS=Pan troglodytes GN=ALS2 PE=2 SV=1        30   7.7  
sp|Q96Q42|ALS2_HUMAN Alsin OS=Homo sapiens GN=ALS2 PE=1 SV=1           30   7.7  

>sp|Q9C5X9|HAC1_ARATH Histone acetyltransferase HAC1 OS=Arabidopsis
            thaliana GN=HAC1 PE=1 SV=1
          Length = 1654

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = -3

Query: 408  KNMEARLSRM*CMTNLLQLAVHHSMCRLRERLAHCT*RRYRVRVMNLWLRMENLCMGLTG 229
            +N EAR  R+  +  +L L VH S C    R AHC     R +V  L+    N  +  +G
Sbjct: 1570 QNKEARQLRVLQLRKMLDLLVHASQC----RSAHCQYPNCR-KVKGLFRHGINCKVRASG 1624

Query: 228  RCACCEK 208
             C  C+K
Sbjct: 1625 GCVLCKK 1631


>sp|Q9ZZW4|Q0142_YEAST Putative uncharacterized protein Q0142,
           mitochondrial OS=Saccharomyces cerevisiae GN=Q0142 PE=5
           SV=1
          Length = 58

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 45  MLGSGTLPSXNIHTFHLTMVMLLCSILL 128
           M GSGT PS  ++T+++TM M +  I++
Sbjct: 1   MTGSGTPPSREVNTYYMTMTMTMTMIMI 28


>sp|A5GFW5|CASS4_PIG Cas scaffolding protein family member 4 OS=Sus
           scrofa GN=CASS4 PE=3 SV=1
          Length = 784

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = -2

Query: 520 AISPKPDYVPVSSEQGESTLVSV*RDMSTEAVSEPLAQEYGSTLEQNVMHDKLAAISSAS 341
           ++SP+PD + VSS    ++++S     ST++ S   ++E    L  ++  D      +A 
Sbjct: 387 SLSPEPDSISVSSSDSRASVLSSCSSTSTDSSSSSFSEEAAKELPLDL--DSAKETVTAL 444

Query: 340 QHVSSQGETGTLH 302
           QH  +   +  +H
Sbjct: 445 QHKVASSVSSLMH 457


>sp|A2A690|TANC2_MOUSE Protein TANC2 OS=Mus musculus GN=Tanc2 PE=1
            SV=1
          Length = 1994

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 19/63 (30%), Positives = 34/63 (53%)
 Frame = -2

Query: 424  SEPLAQEYGSTLEQNVMHDKLAAISSASQHVSSQGETGTLHMKTVQSQSDEPVVEDGKPV 245
            ++P +  + ST+     + ++A  S AS++ SSQG+ G    + V   S   +V DG+PV
Sbjct: 1620 NQPSSAVHSSTVIPTGAYGQVAH-SMASKYQSSQGDMGVSQSRLVYQGSIGGIVGDGRPV 1678

Query: 244  HGI 236
              +
Sbjct: 1679 QHV 1681


>sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1
           OS=Rattus norvegicus GN=Mdc1 PE=2 SV=2
          Length = 1279

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
 Frame = -2

Query: 532 GARRAISPKPDYVPVSSEQGESTLVSV*RDMSTEAVSEPLAQEYGST--LEQNVMHDKLA 359
           G+R   SP    VP S E+G S   SV    S   +     +  G    +E++ + D   
Sbjct: 183 GSRNTASPSATVVPESDEEGSSPGPSVPGPSSPFGLGSDTDESQGQQPGVEESSLADNSG 242

Query: 358 AISSASQHVSSQGETGTLHMKTVQSQSDEPVVED----GKPVHGI 236
           A     Q   +   TGTL   T     D  + E+    G PV  +
Sbjct: 243 AAGEPEQPEVNGVTTGTLAQPTKDKFKDTKMKEEAGSAGVPVGSV 287


>sp|Q9HCD6|TANC2_HUMAN Protein TANC2 OS=Homo sapiens GN=TANC2 PE=1
            SV=3
          Length = 1990

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -2

Query: 358  AISSASQHVSSQGETGTLHMKTVQSQSDEPVVEDGKPVHGI 236
            A S AS++ SSQG+ G    + V   S   +V DG+PV  +
Sbjct: 1637 AHSMASKYQSSQGDIGVSQSRLVYQGSIGGIVGDGRPVQHV 1677


>sp|Q5BIW4|ALS2_PANTR Alsin OS=Pan troglodytes GN=ALS2 PE=2 SV=1
          Length = 1657

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = -2

Query: 529 ARRAISPKPDYVPVSSEQGESTLVSV*RDMSTE--AVSEPLAQEYGSTLEQNVMHDKLAA 356
           A  A+SP  + +    E  E+TLV+  + ++TE  AVS  +      + +QNVM      
Sbjct: 272 ASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITSSDAMSSQQNVM--GTTE 329

Query: 355 ISSASQHVSSQGETGTLHMKTVQSQSDEPVVEDGKPVHG 239
           ISSA +++ S  +T  ++ + ++  SD  V ED +  HG
Sbjct: 330 ISSA-RNIPSYPDTQAVN-EYLRKLSDHSVREDSE--HG 364


>sp|Q96Q42|ALS2_HUMAN Alsin OS=Homo sapiens GN=ALS2 PE=1 SV=1
          Length = 1657

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
 Frame = -2

Query: 529 ARRAISPKPDYVPVSSEQGESTLVSV*RDMSTE--AVSEPLAQEYGSTLEQNVMHDKLAA 356
           A  A+SP  + +    E  E+TLV+  + ++TE  AVS  +      + +QNVM      
Sbjct: 272 ASTALSPSTETLDRQEEVFENTLVANDQSVATELNAVSAQITSSDAMSSQQNVM--GTTE 329

Query: 355 ISSASQHVSSQGETGTLHMKTVQSQSDEPVVEDGKPVHG 239
           ISSA +++ S  +T  ++ + ++  SD  V ED +  HG
Sbjct: 330 ISSA-RNIPSYPDTQAVN-EYLRKLSDHSVREDSE--HG 364
tr_hit_id Q9SXN4
Definition tr|Q9SXN4|Q9SXN4_BRACM SLL2-S9-protein OS=Brassica campestris
Align length 97
Score (bit) 35.8
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921655|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_F03.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SXN4|Q9SXN4_BRACM SLL2-S9-protein OS=Brassica campestris GN...    36   1.5  
tr|A9THP2|A9THP2_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.6  
tr|Q5AFR2|Q5AFR2_CANAL Putative uncharacterized protein OS=Candi...    35   3.4  
tr|Q3MPM6|Q3MPM6_CANAL Putative uncharacterized protein CaJ7.012...    35   3.4  
tr|Q96347|Q96347_BRANA SLL2 OS=Brassica napus PE=2 SV=1                34   4.4  
tr|Q31EX0|Q31EX0_THICR Putative uncharacterized protein OS=Thiom...    34   5.8  
tr|A4HN83|A4HN83_LEIBR Putative uncharacterized protein OS=Leish...    34   5.8  
tr|Q6FEH8|Q6FEH8_ACIAD Putative uncharacterized protein OS=Acine...    33   7.5  
tr|Q2PFY9|Q2PFY9_MACFA Putative uncharacterized protein OS=Macac...    33   7.5  
tr|B0C080|B0C080_ACAM1 Putative uncharacterized protein OS=Acary...    33   9.8  

>tr|Q9SXN4|Q9SXN4_BRACM SLL2-S9-protein OS=Brassica campestris
           GN=SLL2-S9 PE=2 SV=1
          Length = 337

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = -2

Query: 523 RAISPKPDYVPVSSEQGESTLVSV*RDMSTEAVSEPLAQEYGSTLEQNVMH-DKLAAISS 347
           R    +P+  P    +  +  ++   D S  A S  +  EYGSTL+ +  H D   A+SS
Sbjct: 5   RLAPEEPETTPQQQARATTDSLASDDDRSIAADSWSIKSEYGSTLDDDQRHADAAEALSS 64

Query: 346 ASQHVSSQGETGTLHMKTVQSQSDEPVVEDGKPVHGI 236
           A+  VSS             S  +EP  E G+ + G+
Sbjct: 65  ANFRVSSD----------YSSDKEEPDAEGGQSMLGL 91


>tr|A9THP2|A9THP2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170131 PE=4 SV=1
          Length = 878

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = -2

Query: 442 MSTEAVSEPLAQEYGSTLE-QNVMHDKLAAISSASQHVSSQGETGTLHMKTVQSQSDEPV 266
           M  +AVS   +   G T+E Q++ H+ +AA+   SQH SS G +GT  M+T    SD   
Sbjct: 269 MGRQAVSNGSS---GVTMENQSLSHNTVAAVPLPSQHPSSSGVSGTDTMQTSVQTSDTSA 325

Query: 265 VEDGK--PVHG 239
               K  PV G
Sbjct: 326 SSQAKVGPVGG 336


>tr|Q5AFR2|Q5AFR2_CANAL Putative uncharacterized protein OS=Candida
           albicans GN=CaO19.7006 PE=4 SV=1
          Length = 1046

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
 Frame = -2

Query: 514 SPKPDYVP----VSSEQGESTLVSV*R-DMSTEAVSEPLAQEYGSTLEQNVMHDKLAAI- 353
           +PKP YVP    + + +  ++L S  R + ++   + PL  +Y    E+N   D+   I 
Sbjct: 57  NPKPSYVPGNASIPNARRYNSLTSASRVNYNSNVPTSPLQHQYTQIHEENEGADEEEIII 116

Query: 352 -SSASQHVSSQGETGTLHMKTVQSQSD 275
            ++ ++ V SQG T +L  KTV++  D
Sbjct: 117 TTTTTKVVDSQGRTTSLTTKTVKTLPD 143


>tr|Q3MPM6|Q3MPM6_CANAL Putative uncharacterized protein CaJ7.0126
           OS=Candida albicans GN=CaJ7.0126 PE=4 SV=1
          Length = 1094

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
 Frame = -2

Query: 514 SPKPDYVP----VSSEQGESTLVSV*R-DMSTEAVSEPLAQEYGSTLEQNVMHDKLAAI- 353
           +PKP YVP    + + +  ++L S  R + ++   + PL  +Y    E+N   D+   I 
Sbjct: 105 NPKPSYVPGNASIPNARRYNSLTSASRVNYNSNVPTSPLQHQYTQIHEENEGADEEEIII 164

Query: 352 -SSASQHVSSQGETGTLHMKTVQSQSD 275
            ++ ++ V SQG T +L  KTV++  D
Sbjct: 165 TTTTTKVVDSQGRTTSLTTKTVKTLPD 191


>tr|Q96347|Q96347_BRANA SLL2 OS=Brassica napus PE=2 SV=1
          Length = 337

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = -2

Query: 523 RAISPKPDYVPVSSEQGESTLVSV*RDMSTEAVSEPLAQEYGSTLEQNVMH-DKLAAISS 347
           R    +P+  P    +  +  ++   D S  A S  +  EYGSTL+ +  H D   A+SS
Sbjct: 5   RLAPEEPETTPQQHARATTDSLASDDDRSIAADSWSIKSEYGSTLDDDQRHADAAEALSS 64

Query: 346 ASQHVSSQGETGTLHMKTVQSQSDEPVVEDGKPVHGI 236
           A+  VSS             S  +EP  + G+ + G+
Sbjct: 65  ANFRVSSD----------YSSDKEEPDADGGQSMLGL 91


>tr|Q31EX0|Q31EX0_THICR Putative uncharacterized protein
           OS=Thiomicrospira crunogena (strain XCL-2) GN=Tcr_1711
           PE=4 SV=1
          Length = 179

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 22/113 (19%)
 Frame = +1

Query: 256 HPQPQVHHSDSVPSSCAVCQSLPETTHAVMHC*-LQQVCHALHSAQA-------CFHILV 411
           HP  +  H +      A+ + L E+ +   HC  L+   HA H+ +A       C HIL 
Sbjct: 11  HPHLRTTHKNVAWILAAIHEMLDESMY---HCETLRHTLHAHHNLKAATVFEELCPHILS 67

Query: 412 LRARIQ-----------PPWTYPSK---HSLKYSLLAHYLQAHNQAWD*WHDV 528
            +  +Q           PPW  P     H +     AHYL + ++AW    D+
Sbjct: 68  EQVLMQDAIGSMLLPEIPPWEIPYHDYIHPVSALTHAHYLMSESEAWKTMSDI 120


>tr|A4HN83|A4HN83_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM34_V2.4110 PE=4 SV=1
          Length = 1071

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +2

Query: 266 HRFITLTLYRLHVQCASLSLRRHML*CTANCSKFVMHYI 382
           HR + L LY L +Q ASLSLR ++L   A   ++  H+I
Sbjct: 308 HRELPLELYVLFIQYASLSLRMYLLQAVAEVFEWTSHFI 346


>tr|Q6FEH8|Q6FEH8_ACIAD Putative uncharacterized protein
           OS=Acinetobacter sp. (strain ADP1) GN=ACIAD0607 PE=4
           SV=1
          Length = 252

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 119 NTFASCSEIFTHLHT--HIFASPT*FLFPXHCFSQQAH 226
           +TF  C+++  H+ T  HIFASP  F     C+ +  H
Sbjct: 96  DTFLGCAQVSNHIGTGTHIFASPAFFFITRSCYEKLGH 133


>tr|Q2PFY9|Q2PFY9_MACFA Putative uncharacterized protein OS=Macaca
           fascicularis PE=2 SV=1
          Length = 617

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = -2

Query: 520 AISPKPDYVPVSSEQGESTLVSV*RDMSTEAVSEPLAQEYGSTLEQ-NVMHDKLAAISSA 344
           A+ P    V   S    S+  S   D ST+   E  AQ      EQ  V+H++LAA+S  
Sbjct: 368 AVPPPTKVVAPPSSSDSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKVVHEQLAALSQP 427

Query: 343 SQHVSSQGETGTLHMKTVQSQSDEPVVEDGK 251
            Q+   + E      K  + +  E V E+ K
Sbjct: 428 QQNKPKKKEKDKKEKKKEKHKRKEEVEENKK 458


>tr|B0C080|B0C080_ACAM1 Putative uncharacterized protein
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_4598
           PE=4 SV=1
          Length = 427

 Score = 33.1 bits (74), Expect = 9.8
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 322 PETTHAVMHC*LQQV-CHALHSAQACFHILVLRARIQPPWTYPSKHSLKYSLLAHYLQAH 498
           P  T A+MH  +QQ+    L  A +          +QPP + PS+   K + +A +L+AH
Sbjct: 349 PTPTEALMHPQMQQIRVSDLKEAHS--------QALQPPQSLPSELVQKITTMARFLEAH 400

Query: 499 NQAWD*WHDVPPRNQW 546
                 +H +P + +W
Sbjct: 401 ------YHGIPQQIEW 410