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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP921656
Clone id YMU001_000152_F04
Library
Length 564
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTCCATGGTAAAATTAAACTGTTTCCACAGTCTACAATAGGAAGCCCATTGATGTTTGG
TGGCGGTACTCATTTCCTCGGTGTTCATCAAAATTAAAATCTTTCCACTGTTACAAACAA
AAACAATCAAATGGGATGAGGCCATAAAGTAGTTTCTTGGCATGCCCCTAACTAGTGTAC
ATTACAAAAGGTCAACCCACTGAGGTGTTTCAACAGGATGCCTCATCCTAGGCTATACAA
AACTCAATCAACTCAGTCCTCTAAACGTACTGCCCTAATTTGTAAAGAAACTCCACCTGA
CTAAATCAATAATTAATAGTACAACCTTTTTACATCCTATCGTGGCCCAGATGTATCAAA
ACAATGATCATAAACAATCCTTTTTCTCCCCCATCTCCACCAAACTGGACCTCGAATAAC
CTGTCTCATTCCATGCTTGCCTTCTCGCTTTGTAGAATCCATGTTCCATCATCAAAGTGC
CCGGGACACAAAGGATCACTACTTCAATAGCCCAAAATTCGTCAGTTCTAATATCCTGTT
CGAGGATAAGTATGCACACATAGC
■■Homology search results ■■ -
sp_hit_id Q8GXJ1
Definition sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana
Align length 20
Score (bit) 37.7
E-value 0.04
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921656|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_F04.
         (564 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thal...    38   0.040
sp|Q9WX63|BCSC3_ACEXY Cellulose synthase 1 operon protein C OS=A...    33   0.74 
sp|O82861|BCSC2_ACEXY Cellulose synthase operon protein C OS=Ace...    31   3.7  
sp|P19450|BCSC1_ACEXY Cellulose synthase operon protein C OS=Ace...    31   3.7  
sp|Q3AGU7|MNME_SYNSC tRNA modification GTPase mnmE OS=Synechococ...    30   8.3  

>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis
           thaliana GN=HDA15 PE=2 SV=1
          Length = 552

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = -1

Query: 426 RQVIRGPVWWRWGRKRIVYD 367
           R+V+R P WW+WGRK+++Y+
Sbjct: 522 RKVVRVPTWWKWGRKKLLYN 541


>sp|Q9WX63|BCSC3_ACEXY Cellulose synthase 1 operon protein C
            OS=Acetobacter xylinus GN=bcsCI PE=3 SV=1
          Length = 1325

 Score = 33.5 bits (75), Expect = 0.74
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +2

Query: 2    FHGKIKLFPQSTIGSPLMFGGGTHFLGVHQN*NLSTVTNKNNQMG*GHKVVSWHAPN 172
            FHG++    ++T+G+ +++GGG + +   +N    T +N   + G G   + WH  N
Sbjct: 1115 FHGQV----EATLGNTILYGGGGYAIQTGKN----TRSNNEREAGIGANTLVWHNAN 1163


>sp|O82861|BCSC2_ACEXY Cellulose synthase operon protein C
            OS=Acetobacter xylinus GN=bcsC PE=3 SV=1
          Length = 1326

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 2    FHGKIKLFPQSTIGSPLMFGGGTHFLGVHQN*NLSTVTNKNNQMG*GHKVVSWHAPN 172
            FHG++    ++T+G+ +++GGG + +   +N       N   + G G   + WH  N
Sbjct: 1116 FHGQV----EATLGNTILYGGGGYAIQTGKN----VQRNSEREAGIGANTLVWHNAN 1164


>sp|P19450|BCSC1_ACEXY Cellulose synthase operon protein C
            OS=Acetobacter xylinus GN=bcsC PE=3 SV=1
          Length = 1319

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 2    FHGKIKLFPQSTIGSPLMFGGGTHFLGVHQN*NLSTVTNKNNQMG*GHKVVSWHAPN 172
            FHG++    ++T+G+ +++GGG + +   +N       N   + G G   + WH  N
Sbjct: 1109 FHGQV----EATLGNTILYGGGGYAIQTGKN----VQRNSEREAGIGANTLVWHNAN 1157


>sp|Q3AGU7|MNME_SYNSC tRNA modification GTPase mnmE OS=Synechococcus
           sp. (strain CC9605) GN=mnmE PE=3 SV=1
          Length = 450

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 426 RQVIRGPVWWRWGRKRIVYDHCFDTSGPR*D 334
           R V+  P    WG  R+VY H  D+ G R D
Sbjct: 36  RSVVHCPGRQEWGSHRVVYGHVIDSEGRRLD 66
tr_hit_id A9TT63
Definition tr|A9TT63|A9TT63_PHYPA Class II RPD3 type histone deacetylase protein OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 43.5
E-value 0.008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP921656|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_F04.
         (564 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TT63|A9TT63_PHYPA Class II RPD3 type histone deacetylase pr...    44   0.008
tr|Q0Z9W1|Q0Z9W1_WHEAT Histone deacetylase HDAC4 OS=Triticum aes...    39   0.15 
tr|A9T0A0|A9T0A0_PHYPA Class II RPD3 type histone deacetylase pr...    35   2.9  
tr|Q0D8F2|Q0D8F2_ORYSJ Os07g0164100 protein OS=Oryza sativa subs...    35   3.7  
tr|A2YIG4|A2YIG4_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.7  

>tr|A9TT63|A9TT63_PHYPA Class II RPD3 type histone deacetylase
           protein OS=Physcomitrella patens subsp. patens
           GN=HDA1510 PE=4 SV=1
          Length = 535

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = -1

Query: 462 MDSTKREG--KHGMRQVIRGPVWWRWGRKRIVYD 367
           +DS  + G  K   R+ I GP+WW+WGRKR++YD
Sbjct: 480 LDSWSKAGERKSSKRRHIGGPIWWKWGRKRVLYD 513


>tr|Q0Z9W1|Q0Z9W1_WHEAT Histone deacetylase HDAC4 OS=Triticum
           aestivum PE=2 SV=1
          Length = 404

 Score = 39.3 bits (90), Expect = 0.15
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 411 GPVWWRWGRKRIVYDHCFDTSGPR 340
           GPVWW+WG KR++Y+  F+   PR
Sbjct: 374 GPVWWKWGSKRLLYEVLFEGRRPR 397


>tr|A9T0A0|A9T0A0_PHYPA Class II RPD3 type histone deacetylase
           protein OS=Physcomitrella patens subsp. patens
           GN=HDA1501 PE=4 SV=1
          Length = 534

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -1

Query: 444 EGKHGMRQVIRGPVWWRWGRKRI 376
           EGK   R+ I  PVWW+W RKR+
Sbjct: 486 EGKGIKRRYIDNPVWWKWDRKRV 508


>tr|Q0D8F2|Q0D8F2_ORYSJ Os07g0164100 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0164100 PE=4 SV=1
          Length = 623

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 411 GPVWWRWGRKRIVYDHCFD 355
           GP WW+WG KR++Y+  F+
Sbjct: 584 GPFWWKWGSKRLLYEVLFE 602


>tr|A2YIG4|A2YIG4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25007 PE=4 SV=1
          Length = 623

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 411 GPVWWRWGRKRIVYDHCFD 355
           GP WW+WG KR++Y+  F+
Sbjct: 584 GPFWWKWGSKRLLYEVLFE 602