BP921659
Clone id YMU001_000152_F07
Library
Length 563
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000152_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAACACAGTTCAAGCCGGTACTCCAGACTCTGCACCTTCTCCAGGAAGCATGCCATTAGT
AGGTCGACACGTCAGCAGTTTGTTACAACAGAGATGTGCACAGCAGCAAGGCTCTGCGGG
ACAACTTGATAGAGATTAGAGGGGTCAGAGTCGGTAGGAGCAGAGTGATTAGGAGCAGCA
CAATGTTGATCAGACACAGAGACAAAGATAGTAGGTAGGTAGGGATAGGCACAATCTATC
CTTGTTTATAGATAGGTAGCGAGATAGAGGTTGGATGAGGCAAAGCAGCCCAAGACAAAC
CTCTTGAGGAGAGGGTACTATTGCAAGATCAAGAGGAGATTTTAGAGTAGGTGGACAAAG
GGATAGAGCACGCGGACTAGTAGTCGGTGGCAGTTTTGGATTAGCCTGAGTTGCCTCAGG
ACACCCTTGGTGATTCAATCATAGGTGTCTCTTACAATAGGCACTATTGAGGGTTTGCAA
GAGAGAGAGTCTTCTCAATTTGCAGAGGAGTTTTACTATTCAGCAGGTTCTGCATCACTA
GCAAATGTCTTGGTATCTGAGAT
■■Homology search results ■■ -
sp_hit_id Q63537
Definition sp|Q63537|SYN2_RAT Synapsin-2 OS=Rattus norvegicus
Align length 40
Score (bit) 31.2
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921659|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_F07.
(563 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q63537|SYN2_RAT Synapsin-2 OS=Rattus norvegicus GN=Syn2 PE=1 ... 31 3.7
sp|Q64332|SYN2_MOUSE Synapsin-2 OS=Mus musculus GN=Syn2 PE=1 SV=2 31 3.7
sp|Q17QN9|S22AG_BOVIN Solute carrier family 22 member 16 OS=Bos ... 31 4.8
sp|Q5TCM9|LCE5A_HUMAN Late cornified envelope protein 5A OS=Homo... 31 4.8
sp|Q69ZS7|HBS1L_MOUSE HBS1-like protein OS=Mus musculus GN=Hbs1l... 30 6.3
sp|Q5TA79|LCE2A_HUMAN Late cornified envelope protein 2A OS=Homo... 30 8.2

>sp|Q63537|SYN2_RAT Synapsin-2 OS=Rattus norvegicus GN=Syn2 PE=1
SV=1
Length = 586

Score = 31.2 bits (69), Expect = 3.7
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = +2

Query: 11 QAGTPDSAPSPGSMPLVGRHVSSLLQQRCAQQQGSAGQLD 130
QA P AP P P VG S L Q Q SAG +D
Sbjct: 64 QAPAPQPAPQPAPTPSVGSSFFSSLSQAVKQTAASAGLVD 103


>sp|Q64332|SYN2_MOUSE Synapsin-2 OS=Mus musculus GN=Syn2 PE=1 SV=2
Length = 586

Score = 31.2 bits (69), Expect = 3.7
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = +2

Query: 11 QAGTPDSAPSPGSMPLVGRHVSSLLQQRCAQQQGSAGQLD 130
QA P AP P P VG S L Q Q SAG +D
Sbjct: 64 QAPAPQPAPQPAPTPSVGSSFFSSLSQAVKQTAASAGLVD 103


>sp|Q17QN9|S22AG_BOVIN Solute carrier family 22 member 16 OS=Bos
taurus GN=SLC22A16 PE=2 SV=2
Length = 572

Score = 30.8 bits (68), Expect = 4.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1

Query: 239 IDCAYPYLPTIFVSVSDQHCAAPNHSAPTDSDPSNLYQVVPQSLA 105
I C YL ++F+SVS QH P P N+ QV+ Q L+
Sbjct: 32 ISCGIHYLASVFLSVSPQHTCRP---------PGNVSQVLFQDLS 67


>sp|Q5TCM9|LCE5A_HUMAN Late cornified envelope protein 5A OS=Homo
sapiens GN=LCE5A PE=2 SV=1
Length = 118

Score = 30.8 bits (68), Expect = 4.8
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3

Query: 435 NHQGCPEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVCLG 289
+ Q C + PK PP +P+ CPP P A P P C G
Sbjct: 6 SQQQCQPPPKCTPKCPPKCTPKCPPKCPPKC-PPQCSAPCPPPVSSCCG 53


>sp|Q69ZS7|HBS1L_MOUSE HBS1-like protein OS=Mus musculus GN=Hbs1l
PE=1 SV=2
Length = 682

Score = 30.4 bits (67), Expect = 6.3
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = -3

Query: 432 HQGCP--EATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSP 307
H+G P + + A+P +P T +P++ +L PP+L++ +L P+P
Sbjct: 190 HKGPPGDDVSVASPNIPETGTPKS-ALPPPSLQTSEELGSTPTP 232


>sp|Q5TA79|LCE2A_HUMAN Late cornified envelope protein 2A OS=Homo
sapiens GN=LCE2A PE=2 SV=1
Length = 106

Score = 30.0 bits (66), Expect = 8.2
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = -3

Query: 435 NHQGCPEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVC 295
N Q C + PK PP P+ CP P+ PS C
Sbjct: 6 NQQQCQPPPKCPPKCPPKCPPKCRPQCPAPCPPPVSSCCGPSSGGCC 52


tr_hit_id Q6P6X8
Definition tr|Q6P6X8|Q6P6X8_DANRE Asxl1 protein (Fragment) OS=Danio rerio
Align length 42
Score (bit) 34.3
E-value 4.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP921659|Adiantum capillus-veneris mRNA, clone:
YMU001_000152_F07.
(563 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6P6X8|Q6P6X8_DANRE Asxl1 protein (Fragment) OS=Danio rerio G... 34 4.8
tr|A8JAI4|A8JAI4_CHLRE Predicted protein (Fragment) OS=Chlamydom... 34 4.8
tr|A7NGH9|A7NGH9_ROSCS FAD dependent oxidoreductase OS=Roseiflex... 33 8.2

>tr|Q6P6X8|Q6P6X8_DANRE Asxl1 protein (Fragment) OS=Danio rerio
GN=Asxl1 PE=2 SV=1
Length = 1632

Score = 34.3 bits (77), Expect = 4.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3

Query: 420 PEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVC 295
P + +NP LP + SP+ L+L PP SP A +E+C
Sbjct: 779 PSSVSSNPSLPSSESPKILALSPPATDSP---ASQDQVEEIC 817


>tr|A8JAI4|A8JAI4_CHLRE Predicted protein (Fragment)
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_121177 PE=4
SV=1
Length = 130

Score = 34.3 bits (77), Expect = 4.8
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Frame = -3

Query: 423 CPEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVCLGL---LCLIQPLSRYL 253
CP TQ+ P L PR S+CP T +S L +P +C G ++ L RY
Sbjct: 20 CPGTTQSAPVL--LNLPRYYSICPGTTQSAPVLLNLPQYYSICPGTTQSAPVLLNLPRYY 77

Query: 252 SI-----NKDRLCLSLPTYY 208
SI + L+LP YY
Sbjct: 78 SICPGTTQSAPVLLNLPRYY 97


>tr|A7NGH9|A7NGH9_ROSCS FAD dependent oxidoreductase OS=Roseiflexus
castenholzii (strain DSM 13941 / HLO8) GN=Rcas_0435 PE=4
SV=1
Length = 347

Score = 33.5 bits (75), Expect = 8.2
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = -3

Query: 432 HQGCPEATQANPKLPPTTSPRALSLCPPTLKSPLDLAIVPSPQEVCLGL-LCLIQPLSR- 259
H G +A P P T A+S PTL+ L ++ P CL L L +P+ R
Sbjct: 153 HAGTADAVLLTPPAPQTAEILAMSEFDPTLRDALVRELIRVPYRRCLTLTLAYDRPIERP 212

Query: 258 -YLSINKDR 235
Y +N DR
Sbjct: 213 FYALVNVDR 221