BP921661 |
Clone id |
YMU001_000152_F09 |
Library |
YMU01 |
Length |
477 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000152_F09. |
Accession |
BP921661 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
GTTCGAGCCAGCCGAACGAGCAGGTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAG AGAAGAAGAAGCCATGGCTGCCGTCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCAAC TGCCCCCGCTGCTTCTCTGAAGTCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTC CCTCTCTCCTAAGCTATCCGCCCGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGAT CTCGACCAAAACTCCCTTGGGACCTTCCGGCGATACCAAATTCAAGGGTAACCTGGATGC CTCTGGTCGCAAAGCTAAGGGAAAGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAA TGTCGATGGATACAGCCCTATCTATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTA TGCTGCAGGTCCTACTGGATTGGCTATCTGGGCAGTTACCCTCGGCGCTATCTTGTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
106 |
Score (bit) |
128.0 |
E-value |
1.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP921661|Adiantum capillus-veneris mRNA, clone: YMU001_000152_F09. (477 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 128 1e-29 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 127 2e-29 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 127 3e-29 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 125 1e-28 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 124 2e-28 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 123 4e-28 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 121 2e-27 sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (i... 31 2.5 sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus... 30 5.5 sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda sa... 30 5.5 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 7.2 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 7.2 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 7.4 sp|A9F8Z2|PNP_SORC5 Polyribonucleotide nucleotidyltransferase OS... 29 9.4
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 128 bits (321), Expect = 1e-29 Identities = 64/106 (60%), Positives = 76/106 (71%) Frame = +2
Query: 158 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 337 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 338 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAIL 475 Y KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVTL IL Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGIL 123
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 127 bits (320), Expect = 2e-29 Identities = 63/104 (60%), Positives = 76/104 (73%) Frame = +2
Query: 164 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 343 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 344 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAIL 475 KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVTL IL Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGIL 121
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 127 bits (319), Expect = 3e-29 Identities = 64/104 (61%), Positives = 75/104 (72%) Frame = +2
Query: 164 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 343 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 344 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAIL 475 KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVTL IL Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGIL 123
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 125 bits (314), Expect = 1e-28 Identities = 63/106 (59%), Positives = 74/106 (69%) Frame = +2
Query: 158 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 337 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 338 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAIL 475 + KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVTL IL Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGIL 126
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 124 bits (311), Expect = 2e-28 Identities = 62/104 (59%), Positives = 73/104 (70%) Frame = +2
Query: 164 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 343 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 344 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAIL 475 KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVTL +L Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLL 125
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 123 bits (309), Expect = 4e-28 Identities = 65/112 (58%), Positives = 72/112 (64%) Frame = +2
Query: 140 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAK 319 +S+ GV+ PS P SL I A KK+ T P GP G FK +DASGR AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 320 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAIL 475 GKGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVTL IL Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGIL 123
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 121 bits (303), Expect = 2e-27 Identities = 62/103 (60%), Positives = 71/103 (68%) Frame = +2
Query: 167 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTK 346 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 347 KYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAIL 475 KYGANVDGYSPIY EWS SGD Y G TGLAIWAVTL IL Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGIL 125
>sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (isolate Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1 Length = 2238
Score = 31.2 bits (69), Expect = 2.5 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = +2
Query: 158 VQVQGIPSLSPKLSARSLRIEASGVKKIST----KTPLGPSGDTKFKGNLDASGRKA--K 319 ++ + IPSL + ++ + G KKI K+ S + F G + G K Sbjct: 1591 IETEEIPSLIKSIQSKLSKNFVKGAKKILAESINKSAFQSSIASGFIGFCQSVGSKCVRT 1650
Query: 320 GKGVYQYTKKYGANVDGYSPIYVPEEW 400 G+G + Y K+ + VD Y P V W Sbjct: 1651 GEGGFYYIKELKSKVDLYCPCEVCARW 1677
>sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplO PE=3 SV=1 Length = 146
Score = 30.0 bits (66), Expect = 5.5 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +2
Query: 140 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTK 250 KSE SG+++ G SL KL+ ++ + AS + I K Sbjct: 103 KSEKSGIKILGTGSLDKKLTVKASKFSASAAEAIDAK 139
>sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda salsa GN=PRXQ PE=1 SV=1 Length = 214
Score = 30.0 bits (66), Expect = 5.5 Identities = 24/66 (36%), Positives = 35/66 (53%) Frame = +2
Query: 143 SEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKG 322 S+F G+++ SLSP L RS + AS V K+S + + P+ K + + S K KG Sbjct: 37 SQFCGIKLSHSSSLSPPLYPRSYK--ASIVAKVS-EGSMPPAFTLKDQDGKNVSLSKFKG 93
Query: 323 KGVYQY 340 K V Y Sbjct: 94 KPVVVY 99
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S7M9 |
Definition |
tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
112 |
Score (bit) |
139.0 |
E-value |
5.0e-32 |
Report |
|